UHGV-1427662 (vOTU-117753)

Viral Genome: UHGV-1427662

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-1427662
vOTU ID	vOTU-117753
Representative Genome?	Yes
Source	MGV
Original Genome ID	MGV-GENOME-0228992
Associated Biosample	SAMEA2042983
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	87.07 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	21
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9802
Viral Hallmark Genes (geNomad)	6
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	50.27
Jumbo Phage?	No

Genome Content
Length (bps)	33,120
GC Content	43.05%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	50
CDS Density	95%
Average CDS Length (bps)	629.64
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 87.07)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1427662_3	K14059	139.3	4.19997e-41	int; integrase	N/A
PHROG	UHGV-1427662_3	phrog_1	166.7	0	integrase	integration and excision
UniRef90	UHGV-1427662_3	UniRef90_A0A3A6JBV3	698.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1427662_3	1280698.AUJS01000007_gene999	211.0	0	Phage integrase family	N/A
Pfam	UHGV-1427662_3	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1427662_3	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1427662_3	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1427662_4	UniRef90_A0A173W8P0	663.0	0	Virulence protein	N/A
eggNOG-mapper	UHGV-1427662_4	1035196.HMPREF9998_00638	521.0	0	Virulence protein RhuM family	N/A
Pfam	UHGV-1427662_4	PF13310	N/A	N/A	Virulence protein RhuM family	Virulence_RhuM
COG	UHGV-1427662_4	COG3943	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1427662_4	PF13310,TIGR02681,COG3943	N/A	N/A	N/A	N/A
PHROG	UHGV-1427662_5	phrog_20886	83.3	1.3e-24	N/A	unknown function
UniRef90	UHGV-1427662_5	UniRef90_UPI000C757FC8	63.9	0.00000000000759	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1427662_5	476272.RUMHYD_02825	75.9	1.4e-16	N/A	N/A
structural_annotation	UHGV-1427662_5	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-1427662_7	K22300	52.1	0.000000000000015	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1427662_7	phrog_8	62.3	1.2e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1427662_7	UniRef90_A0A416ZY02	220.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1427662_7	626523.GCWU000342_01050	83.2	1.35e-18	Helix-turn-helix	N/A
Pfam	UHGV-1427662_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1427662_7	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1427662_7	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1427662_8	UniRef90_A0A416ZXQ1	134.0	8.67e-40	N/A	N/A
eggNOG-mapper	UHGV-1427662_8	626523.GCWU000342_01049	80.5	2.35e-19	N/A	N/A
Pfam	UHGV-1427662_8	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-1427662_8	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1427662_8	PF05339,MF_00535,NF002773,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1427662_10	PF09202,MF_01819,NF008565,COG3432	N/A	N/A	N/A	N/A
UniRef90	UHGV-1427662_11	UniRef90_R5VU56	125.0	3.59e-35	HTH_11 domain-containing protein	N/A
structural_annotation	UHGV-1427662_11	PF20063	N/A	N/A	N/A	N/A
PHROG	UHGV-1427662_13	phrog_434	180.5	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1427662_13	UniRef90_A0A173W7Z3	438.0	0	Putative phage-type endonuclease	N/A
eggNOG-mapper	UHGV-1427662_13	1095750.HMPREF9970_1677	308.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-1427662_13	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1427662_13	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1427662_13	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1427662_13	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-1427662_14	phrog_674	198.1	0	N/A	unknown function
UniRef90	UHGV-1427662_14	UniRef90_UPI00156D61E9	355.0	0	N/A	N/A
eggNOG-mapper	UHGV-1427662_14	1095750.HMPREF9970_1676	137.0	4.58e-36	N/A	N/A
Pfam	UHGV-1427662_14	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1427662_14	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-1427662_17	K07455	202.1	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1427662_17	phrog_148	222.0	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1427662_17	UniRef90_A0A173W8R4	663.0	0	p33	N/A
eggNOG-mapper	UHGV-1427662_17	742765.HMPREF9457_02107	347.0	0	RecT family	N/A
Pfam	UHGV-1427662_17	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1427662_17	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1427662_17	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1427662_17	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1427662_18	phrog_190	132.2	3.1e-39	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1427662_18	UniRef90_A0A3R6WN18	256.0	0	N/A	N/A
eggNOG-mapper	UHGV-1427662_18	1236514.BAKL01000051_gene3708	109.0	2.03e-29	N/A	N/A
Pfam	UHGV-1427662_18	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1427662_18	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-1427662_19	phrog_2562	221.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1427662_19	UniRef90_A0A822LMB7	582.0	0	N/A	N/A
eggNOG-mapper	UHGV-1427662_19	1256908.HMPREF0373_00661	145.0	1.16e-39	N/A	N/A
Pfam	UHGV-1427662_19	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-1427662_19	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-1427662_20	phrog_9804	241.3	0	N/A	unknown function
UniRef90	UHGV-1427662_20	UniRef90_A0A3A6JKE0	405.0	0	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-1427662_20	626523.GCWU000342_01038	139.0	3.44e-38	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-1427662_20	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1427662_20	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-1427662_21	K00571	93.5	2e-27	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1427662_21	phrog_16	227.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1427662_21	UniRef90_A0A173W8R8	1693.0	0	Modification methylase MboII	N/A
eggNOG-mapper	UHGV-1427662_21	1298920.KI911353_gene2709	1398.0	0	DEAD-like helicases superfamily	N/A
Pfam	UHGV-1427662_21	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-1427662_21	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1427662_21	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1427662_21	PF01555,PF16203,PF04851,MF_01821,MF_00472,NF041790,NF008572,COG0553,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-1427662_22	K00558	221.2	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1427662_22	phrog_116	266.7	0	DNA methyltransferase	other
UniRef90	UHGV-1427662_22	UniRef90_A0A3A6J7Y8	958.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1427662_22	1235800.C819_02255	667.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1427662_22	MTase_II_00020	110.7	7.3e-36	Type II methyltransferase	RM
Pfam	UHGV-1427662_22	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1427662_22	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1427662_22	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1427662_23	PF06257,TIGR00739,COG4466	N/A	N/A	N/A	N/A
PHROG	UHGV-1427662_27	phrog_20593	40.5	0.000000000014	N/A	unknown function
PHROG	UHGV-1427662_28	phrog_8684	86.8	1.5e-25	N/A	unknown function
UniRef90	UHGV-1427662_28	UniRef90_A0A3A6J9I1	300.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1427662_28	411470.RUMGNA_02199	110.0	6.88e-29	N/A	N/A
Pfam	UHGV-1427662_28	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1427662_28	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1427662_28	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-1427662_30	phrog_17690	120.8	5.6e-36	N/A	unknown function
UniRef90	UHGV-1427662_30	UniRef90_A0A6L5XWF4	113.0	8.19e-30	3-dehydroquinate synthase	N/A
eggNOG-mapper	UHGV-1427662_30	33035.JPJF01000107_gene432	97.8	1.66e-24	N/A	N/A
PHROG	UHGV-1427662_31	phrog_36	65.3	1.2e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1427662_31	UniRef90_A0A174WV03	112.0	3.51e-29	FliA/WhiG subfamily RNA polymerase sigma-28 subunit	N/A
eggNOG-mapper	UHGV-1427662_31	97138.C820_00772	87.8	3.31e-20	sigma factor activity	N/A
COG	UHGV-1427662_31	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1427662_31	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
KOfam	UHGV-1427662_33	K07474	146.3	3.19496e-43	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1427662_33	phrog_51	157.7	0	terminase small subunit	head and packaging
UniRef90	UHGV-1427662_33	UniRef90_A0A3R6PDT1	271.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1427662_33	1256908.HMPREF0373_00489	209.0	0	Terminase small subunit	N/A
Pfam	UHGV-1427662_33	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1427662_33	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1427662_33	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-1427662_34	K06909	319.6	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1427662_34	phrog_3717	259.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-1427662_34	UniRef90_A0A417PEX5	842.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1427662_34	1256908.HMPREF0373_00486	712.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1427662_34	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1427662_34	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1427662_34	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1427662_34	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1427662_34	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1427662_35	phrog_64	304.7	0	portal protein	head and packaging
UniRef90	UHGV-1427662_35	UniRef90_A0A3A6J7Z8	919.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1427662_35	1256908.HMPREF0373_00485	632.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1427662_35	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1427662_35	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
COG	UHGV-1427662_36	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-1427662_36	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-1427662_38	phrog_595	244.9	0	head maturation protease	head and packaging
UniRef90	UHGV-1427662_38	UniRef90_A0A8D9L2C5	990.0	0	NAD(+)--arginine ADP-ribosyltransferase EFV	N/A
eggNOG-mapper	UHGV-1427662_38	1256908.HMPREF0373_00484	442.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-1427662_38	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1427662_38	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1427662_38	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1427662_40	phrog_872	169.2	0	N/A	unknown function
UniRef90	UHGV-1427662_40	UniRef90_UPI0018C70BF8	203.0	0	N/A	N/A
eggNOG-mapper	UHGV-1427662_40	573413.Spirs_2170	196.0	0	N/A	N/A
Pfam	UHGV-1427662_40	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-1427662_40	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-1427662_40	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-1427662_41	phrog_194	85.5	7e-25	head scaffolding protein	head and packaging
UniRef90	UHGV-1427662_41	UniRef90_UPI000E5C7AD7	254.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1427662_41	1256908.HMPREF0373_00477	103.0	2.03e-24	Phage minor structural protein GP20	N/A
Pfam	UHGV-1427662_41	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1427662_41	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1427662_42	phrog_544	206.1	0	major head protein	head and packaging
UniRef90	UHGV-1427662_42	UniRef90_UPI001C0F52E5	506.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1427662_42	411471.SUBVAR_06940	219.0	0	N/A	N/A
NCBIFam	UHGV-1427662_42	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1427662_42	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1427662_43	phrog_1236	198.7	0	head protein	head and packaging
eggNOG-mapper	UHGV-1427662_43	1256908.HMPREF0373_00475	207.0	0	N/A	N/A
structural_annotation	UHGV-1427662_43	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-1427662_44	phrog_1059	103.7	9.7e-31	head-tail adaptor	connector
UniRef90	UHGV-1427662_44	UniRef90_A0A416AFR5	155.0	0	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-1427662_44	1256908.HMPREF0373_00474	141.0	2.69049e-42	N/A	N/A
structural_annotation	UHGV-1427662_44	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1427662_45	phrog_5	40.9	0.000000000047	tail completion or Neck1 protein	connector
UniRef90	UHGV-1427662_45	UniRef90_A0A416I9Q2	130.0	5.77e-36	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1427662_45	1256908.HMPREF0373_00473	125.0	8.23e-35	N/A	N/A
structural_annotation	UHGV-1427662_45	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1427662_46	phrog_957	75.1	7.2e-22	head protein	head and packaging
eggNOG-mapper	UHGV-1427662_46	1256908.HMPREF0373_00472	104.0	2.71e-27	N/A	N/A
structural_annotation	UHGV-1427662_46	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1427662_47	phrog_885	227.6	0	major tail protein	tail
eggNOG-mapper	UHGV-1427662_47	1256908.HMPREF0373_00471	199.0	0	N/A	N/A
structural_annotation	UHGV-1427662_47	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1427662_48	phrog_1021	64.6	1.9e-18	N/A	unknown function
eggNOG-mapper	UHGV-1427662_48	1256908.HMPREF0373_00470	70.1	0.00000000000068	N/A	N/A
PHROG	UHGV-1427662_49	phrog_1294	84.9	5.2e-25	peptide methionine sulfoxide reductase	other
PHROG	UHGV-1427662_50	phrog_6900	282.5	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1427662_50	1123312.KB904569_gene357	273.0	0	Phage tail tape measure protein TP901	N/A
COG	UHGV-1427662_50	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1427662_50	PF20155,COG3941	N/A	N/A	N/A	N/A