UHGV-1429428 (vOTU-060382)

Viral Genome: UHGV-1429428

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-1429428
vOTU ID	vOTU-060382
Representative Genome?	Yes
Source	MGV
Original Genome ID	MGV-GENOME-0278402
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	99.9 (High-quality)
Trimmed?	No
CheckV Viral Markers	9
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9823
Viral Hallmark Genes (geNomad)	6
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	31.33
Jumbo Phage?	No

Genome Content
Length (bps)	41,918
GC Content	57.45%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	57
CDS Density	95%
Average CDS Length (bps)	697.11
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1429428_1	phrog_156	218.7	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1429428_1	1410650.JHWL01000003_gene2833	361.0	0	N/A	N/A
structural_annotation	UHGV-1429428_1	PF16510,TIGR01538	N/A	N/A	N/A	N/A
PHROG	UHGV-1429428_2	phrog_13908	127.0	1.5e-37	N/A	unknown function
eggNOG-mapper	UHGV-1429428_2	1410650.JHWL01000003_gene2831	92.8	4.75e-19	N/A	N/A
PHROG	UHGV-1429428_3	phrog_1357	217.5	0	major head protein	head and packaging
UniRef90	UHGV-1429428_3	UniRef90_A0A2V2CFL5	371.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1429428_3	1410650.JHWL01000003_gene2830	289.0	0	N/A	N/A
Pfam	UHGV-1429428_3	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1429428_3	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1429428_3	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1429428_4	phrog_15239	40.0	0.000000000058	N/A	unknown function
PHROG	UHGV-1429428_5	phrog_12105	110.7	1e-32	N/A	unknown function
eggNOG-mapper	UHGV-1429428_5	1519439.JPJG01000060_gene1891	72.0	0.0000000000000176	N/A	N/A
UniRef90	UHGV-1429428_6	UniRef90_R5DCX9	152.0	1e-38	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1429428_6	1410650.JHWL01000003_gene2815	125.0	3.85e-29	N/A	N/A
PHROG	UHGV-1429428_7	phrog_22978	119.8	0	N/A	unknown function
eggNOG-mapper	UHGV-1429428_7	1408437.JNJN01000039_gene389	492.0	0	heme binding	N/A
Pfam	UHGV-1429428_7	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
Pfam	UHGV-1429428_7	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
COG	UHGV-1429428_7	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
PHROG	UHGV-1429428_8	phrog_33872	60.1	9.1e-18	N/A	unknown function
eggNOG-mapper	UHGV-1429428_8	693746.OBV_19740	63.5	0.00000000000892	N/A	N/A
structural_annotation	UHGV-1429428_9	PF18962,NF011773	N/A	N/A	N/A	N/A
KOfam	UHGV-1429428_10	K06236	162.0	0	COL1A; collagen type I alpha	N/A
PHROG	UHGV-1429428_10	phrog_819	89.0	0	tail protein	tail
eggNOG-mapper	UHGV-1429428_10	1519439.JPJG01000060_gene1892	97.4	2.01e-18	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-1429428_10	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1429428_10	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-1429428_11	phrog_37900	317.7	0	N/A	unknown function
UniRef90	UHGV-1429428_11	UniRef90_UPI001C3EA4DF	348.0	0	N/A	N/A
eggNOG-mapper	UHGV-1429428_11	552398.HMPREF0866_03098	254.0	0	N/A	N/A
Pfam	UHGV-1429428_11	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-1429428_11	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-1429428_11	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-1429428_12	phrog_29409	40.4	0.000000000031	N/A	unknown function
UniRef90	UHGV-1429428_12	UniRef90_A0A2V2GQ35	60.5	0.00000000329	Isoaspartyl peptidase	N/A
PHROG	UHGV-1429428_14	phrog_27545	156.1	0	N/A	unknown function
UniRef90	UHGV-1429428_14	UniRef90_D1PRE7	167.0	0	Glycosyl hydrolase, family 18 family protein	N/A
eggNOG-mapper	UHGV-1429428_14	1519439.JPJG01000060_gene1895	169.0	0	N/A	N/A
Pfam	UHGV-1429428_14	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
PHROG	UHGV-1429428_15	phrog_937	57.6	2.8e-16	hemolysin	other
eggNOG-mapper	UHGV-1429428_15	1519439.JPJG01000023_gene533	73.9	6.26e-16	N/A	N/A
PHROG	UHGV-1429428_17	phrog_6918	94.7	6.1e-28	holin	lysis
UniRef90	UHGV-1429428_17	UniRef90_G9YP36	106.0	1.2e-27	Phage holin, LL-H family	N/A
eggNOG-mapper	UHGV-1429428_17	1297617.JPJD01000020_gene301	97.8	4.3e-25	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-1429428_17	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-1429428_17	PF09682,TIGR01673	N/A	N/A	N/A	N/A
KOfam	UHGV-1429428_18	K01447	118.4	9.5e-35	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1429428_18	phrog_9611	120.8	1.2e-35	endolysin	lysis
UniRef90	UHGV-1429428_18	UniRef90_A0A1V5KCB7	256.0	0	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
eggNOG-mapper	UHGV-1429428_18	1235802.C823_05611	167.0	0	Ami_2	N/A
Pfam	UHGV-1429428_18	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1429428_18	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-1429428_18	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1429428_19	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1429428_22	1408437.JNJN01000043_gene801	80.5	1.36e-16	N/A	N/A
KOfam	UHGV-1429428_23	K06400	339.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1429428_23	phrog_95	336.5	0	integrase	integration and excision
UniRef90	UHGV-1429428_23	UniRef90_G4KP73	460.0	0	Putative site-specific recombinase	N/A
eggNOG-mapper	UHGV-1429428_23	693746.OBV_21880	460.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1429428_23	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1429428_23	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-1429428_23	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1429428_23	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
Pfam	UHGV-1429428_24	PF13412	N/A	N/A	Winged helix-turn-helix DNA-binding	HTH_24
structural_annotation	UHGV-1429428_24	PF12844,MF_00535,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1429428_27	K22300	50.0	0.000000000000069	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1429428_27	phrog_2967	42.8	0.0000000000088	transcriptional regulator	transcription regulation
UniRef90	UHGV-1429428_27	UniRef90_A0A1Q6RKG1	109.0	3.38e-28	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1429428_27	748224.HMPREF9436_01444	103.0	1.1e-26	N/A	N/A
Pfam	UHGV-1429428_27	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1429428_27	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1429428_27	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1429428_34	phrog_190	114.7	7e-34	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1429428_34	UniRef90_A0A4D7AZG9	123.0	1.49e-33	N/A	N/A
eggNOG-mapper	UHGV-1429428_34	1226322.HMPREF1545_00295	120.0	3.01e-32	N/A	N/A
Pfam	UHGV-1429428_34	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1429428_34	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-1429428_38	phrog_111	166.9	0	DNA methyltransferase	other
UniRef90	UHGV-1429428_38	UniRef90_UPI000F065B6D	228.0	0	adenine methyltransferase	N/A
eggNOG-mapper	UHGV-1429428_38	1121121.KB894312_gene3179	213.0	0	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-1429428_38	oMTase_00015	192.6	0	orphan methyltransferase	RM
Pfam	UHGV-1429428_38	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-1429428_38	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
KOfam	UHGV-1429428_39	K00390	96.3	2.8e-28	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1429428_39	phrog_424	107.0	1.7e-31	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1429428_39	UniRef90_A0A3D3Y454	477.0	0	Adenylyl-sulfate reductase	N/A
eggNOG-mapper	UHGV-1429428_39	1408437.JNJN01000032_gene2312	344.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-1429428_39	BrxP_00001	71.0	1.5e-21	BrxP	BREX
Pfam	UHGV-1429428_39	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1429428_39	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1429428_39	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-1429428_44	phrog_2118	92.6	5.7e-27	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1429428_44	UniRef90_A0A417HX51	198.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1429428_44	1511.CLOST_1546	118.0	1.02e-32	HNH endonuclease	N/A
Pfam	UHGV-1429428_44	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1429428_44	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1429428_44	TIGR02646,COG1403	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1429428_45	1033743.CAES01000078_gene3736	52.8	0.00000859	Flagellar Assembly Protein A	N/A
COG	UHGV-1429428_45	COG1315	N/A	N/A	Flagellar assembly protein FapA, interacts with EIIAGlc	N/A
structural_annotation	UHGV-1429428_45	PF03961	N/A	N/A	N/A	N/A
PHROG	UHGV-1429428_46	phrog_599	40.9	0.0000000000052	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1429428_46	UniRef90_R6QWY1	107.0	1.16e-27	28	N/A
Pfam	UHGV-1429428_46	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
PHROG	UHGV-1429428_48	phrog_3584	117.0	1.4e-34	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1429428_48	537013.CLOSTMETH_02141	84.7	2.41e-17	N/A	N/A
structural_annotation	UHGV-1429428_48	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-1429428_50	phrog_606	70.4	2.9e-20	terminase small subunit	head and packaging
UniRef90	UHGV-1429428_50	UniRef90_UPI001D0F42E6	138.0	4.09e-39	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1429428_50	397290.C810_05185	125.0	1.66e-34	DNA-packaging protein gp3	N/A
Pfam	UHGV-1429428_50	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
KOfam	UHGV-1429428_51	K06909	143.0	2.59941e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1429428_51	phrog_979	140.2	5.10073e-43	terminase large subunit	head and packaging
UniRef90	UHGV-1429428_51	UniRef90_A0A810Q5R0	633.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1429428_51	1410650.JHWL01000003_gene2834	606.0	0	N/A	N/A
Pfam	UHGV-1429428_51	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1429428_51	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1429428_51	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1429428_52	phrog_511	241.6	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1429428_52	1410650.JHWL01000003_gene2827	300.0	0	N/A	N/A
structural_annotation	UHGV-1429428_52	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1429428_53	537007.BLAHAN_05255	72.0	0.000000000121	N/A	N/A
structural_annotation	UHGV-1429428_54	PF00041,NF010681,COG3979	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1429428_55	PF21683	N/A	N/A	N/A	N/A
PHROG	UHGV-1429428_57	phrog_156	78.7	5.8e-23	portal protein	head and packaging
eggNOG-mapper	UHGV-1429428_57	1410650.JHWL01000003_gene2833	196.0	0	N/A	N/A