UHGV-1446033 (vOTU-152835)

Viral Genome: UHGV-1446033

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-1446033
vOTU ID	vOTU-152835
Representative Genome?	Yes
Source	MGV
Original Genome ID	MGV-GENOME-0181100
Associated Biosample	SAMN02334054
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	64.18 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	9
CheckV Host Markers	1
Recoded?	No

Viral Content
geNomad score	0.9719
Viral Hallmark Genes (geNomad)	4
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	14.24
Jumbo Phage?	No

Genome Content
Length (bps)	24,830
GC Content	30.21%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	48
CDS Density	92%
Average CDS Length (bps)	475.81
Total tRNA Genes	1
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 64.18)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1446033_1	K02358	205.3	0	tuf, TUFM; elongation factor Tu	N/A
UniRef90	UHGV-1446033_1	UniRef90_R5QCE1	212.0	0	Elongation factor Tu	N/A
eggNOG-mapper	UHGV-1446033_1	1064535.MELS_0770	201.0	0	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis	N/A
Pfam	UHGV-1446033_1	PF03143	N/A	N/A	Elongation factor Tu C-terminal domain	GTP_EFTU_D3
COG	UHGV-1446033_1	COG0050	N/A	N/A	Translation elongation factor EF-Tu, a GTPase	N/A
KOfam	UHGV-1446033_2	K14059	271.6	0	int; integrase	N/A
PHROG	UHGV-1446033_2	phrog_1	239.5	0	integrase	integration and excision
UniRef90	UHGV-1446033_2	UniRef90_R6HDS7	311.0	0	Phage integrase	N/A
eggNOG-mapper	UHGV-1446033_2	273068.TTE2127	256.0	0	Phage integrase family	N/A
Pfam	UHGV-1446033_2	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1446033_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1446033_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1446033_2	PF00589,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1446033_3	phrog_87	83.7	1.6e-24	metallo-protease	other
UniRef90	UHGV-1446033_3	UniRef90_A0A7X9HW64	90.1	2.27e-20	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1446033_3	698758.AXY_01820	79.0	1.45e-16	Zn peptidase	N/A
Pfam	UHGV-1446033_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1446033_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1446033_3	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-1446033_4	K07729	42.9	0.0000000000093	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1446033_4	phrog_8	50.0	0.000000000000068	transcriptional regulator	transcription regulation
UniRef90	UHGV-1446033_4	UniRef90_A0A1Q6LHM3	111.0	2.56e-29	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1446033_4	235909.GK0493	60.1	0.000000000535	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1446033_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1446033_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1446033_4	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1446033_5	K07729	42.2	0.000000000014	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-1446033_5	UniRef90_A0A2T0BQ53	68.2	0.000000000000174	HTH-type transcriptional regulator Xre	N/A
eggNOG-mapper	UHGV-1446033_5	697281.Mahau_2932	54.7	0.00000000728	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-1446033_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1446033_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1446033_5	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1446033_9	PF09114,MF_00732,TIGR04176,COG1846	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1446033_11	PF09943,COG3461	N/A	N/A	N/A	N/A
PHROG	UHGV-1446033_13	phrog_155	134.6	6.7e-40	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1446033_13	UniRef90_A0A3D1PJF8	295.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1446033_13	1304866.K413DRAFT_1196	216.0	0	ERF superfamily	N/A
Pfam	UHGV-1446033_13	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-1446033_13	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1446033_13	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-1446033_14	K03111	143.0	2.90069e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1446033_14	phrog_44	144.7	4.90454e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1446033_14	UniRef90_R7IS09	198.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1446033_14	1291050.JAGE01000001_gene1719	174.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1446033_14	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1446033_14	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1446033_14	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1446033_14	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1446033_14	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1446033_15	phrog_72	65.1	1.1e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1446033_15	UniRef90_A0A285PU94	65.1	0.000000000373	Recombinase NinB	N/A
eggNOG-mapper	UHGV-1446033_15	411468.CLOSCI_00314	72.8	0.0000000000000671	N/A	N/A
structural_annotation	UHGV-1446033_15	NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-1446033_16	phrog_7566	51.9	0.000000000000012	N/A	unknown function
structural_annotation	UHGV-1446033_17	PF11506,MF_00720,NF004948,COG3390	N/A	N/A	N/A	N/A
PHROG	UHGV-1446033_18	phrog_16304	129.4	3.1e-38	N/A	unknown function
UniRef90	UHGV-1446033_18	UniRef90_A0A315Y0M2	95.5	1.69e-23	N/A	N/A
eggNOG-mapper	UHGV-1446033_18	33035.JPJF01000071_gene4467	87.0	1.36e-19	N/A	N/A
Pfam	UHGV-1446033_18	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1446033_18	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-1446033_19	phrog_15768	94.9	1e-27	N/A	unknown function
eggNOG-mapper	UHGV-1446033_19	411473.RUMCAL_00873	87.0	3.47e-19	Phage replisome organizer, N-terminal domain protein	N/A
COG	UHGV-1446033_19	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-1446033_20	phrog_2289	48.8	0.00000000000013	helicase loader	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-1446033_20	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1446033_21	phrog_4973	58.5	1e-16	N/A	unknown function
UniRef90	UHGV-1446033_21	UniRef90_A0A843HM15	78.6	2e-17	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1446033_21	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1446033_21	PF14090,NF040939,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-1446033_22	K06940	51.8	0.000000000000017	N/A	N/A
PHROG	UHGV-1446033_22	phrog_32498	84.0	1.4e-24	N/A	unknown function
UniRef90	UHGV-1446033_22	UniRef90_A0A7G5N1F4	79.7	2.12e-16	YkgJ family cysteine cluster protein	N/A
eggNOG-mapper	UHGV-1446033_22	476272.RUMHYD_03327	76.3	6.2e-16	Putative zinc- or iron-chelating domain	N/A
Pfam	UHGV-1446033_22	PF03692	N/A	N/A	Putative zinc- or iron-chelating domain	CxxCxxCC
structural_annotation	UHGV-1446033_24	PF15188	N/A	N/A	N/A	N/A
KOfam	UHGV-1446033_25	K01160	44.8	0.000000000003	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1446033_25	phrog_1682	76.0	5.7e-22	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1446033_25	UniRef90_R7FGZ0	107.0	6.87e-28	Gp63	N/A
eggNOG-mapper	UHGV-1446033_25	1226322.HMPREF1545_04070	90.1	1.64e-21	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
Pfam	UHGV-1446033_25	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1446033_25	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1446033_25	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1446033_26	PF09871,TIGR00739,COG4014	N/A	N/A	N/A	N/A
PHROG	UHGV-1446033_30	phrog_26165	45.2	0.0000000000014	N/A	unknown function
structural_annotation	UHGV-1446033_34	PF05263,TIGR01636	N/A	N/A	N/A	N/A
UniRef90	UHGV-1446033_35	UniRef90_A0A5S4VG07	63.9	0.0000000000644	N/A	N/A
Pfam	UHGV-1446033_35	PF13711	N/A	N/A	N/A	DUF4160
UniRef90	UHGV-1446033_37	UniRef90_UPI0014940E84	54.7	0.00000675	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-1446033_37	PF06056,COG2963	N/A	N/A	N/A	N/A
KOfam	UHGV-1446033_38	K06909	134.6	9.2e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1446033_38	phrog_979	153.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-1446033_38	UniRef90_A0A0M2NDA4	532.0	0	Phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-1446033_38	1232449.BAHV02000016_gene1824	533.0	0	N/A	N/A
Pfam	UHGV-1446033_38	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-1446033_38	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1446033_38	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1446033_40	phrog_156	136.8	1.10001e-40	portal protein	head and packaging
UniRef90	UHGV-1446033_40	UniRef90_A0A8D9UHD1	364.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-1446033_40	1121091.AUMP01000003_gene2583	309.0	0	N/A	N/A
structural_annotation	UHGV-1446033_40	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-1446033_42	phrog_1357	227.0	0	major head protein	head and packaging
UniRef90	UHGV-1446033_42	UniRef90_A0A8D9UHB3	288.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-1446033_42	696281.Desru_1092	246.0	0	N/A	N/A
NCBIFam	UHGV-1446033_42	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1446033_42	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1446033_44	1232449.BAHV02000016_gene1817	61.6	0.00000000117	N/A	N/A
PHROG	UHGV-1446033_45	phrog_3287	101.7	5.3e-30	virion structural protein	head and packaging
eggNOG-mapper	UHGV-1446033_45	1232449.BAHV02000016_gene1816	326.0	0	N/A	N/A
structural_annotation	UHGV-1446033_45	PF11134,MF_00923,TIGR04312,COG5276,COG4935	N/A	N/A	N/A	N/A
PHROG	UHGV-1446033_47	phrog_372	279.6	0	tail protein	tail
UniRef90	UHGV-1446033_47	UniRef90_UPI001D0897E0	145.0	3.98e-33	N/A	N/A
eggNOG-mapper	UHGV-1446033_47	1235802.C823_05263	128.0	3.5e-28	N/A	N/A
Pfam	UHGV-1446033_47	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-1446033_47	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1446033_47	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A