UHGV-1500046 (vOTU-137502)

Viral Genome: UHGV-1500046

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-1500046
vOTU ID	vOTU-137502
Representative Genome?	Yes
Source	MGV
Original Genome ID	MGV-GENOME-0230443
Associated Biosample	SAMEA2466984
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	72.63 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	12
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9749
Viral Hallmark Genes (geNomad)	11
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	52.58
Jumbo Phage?	No

Genome Content
Length (bps)	33,401
GC Content	49.64%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	51
CDS Density	94%
Average CDS Length (bps)	613.53
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 72.63)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1500046_2	1211844.CBLM010000023_gene987	50.4	0.00000204	N/A	N/A
UniRef90	UHGV-1500046_3	UniRef90_UPI0018A0054C	168.0	0	N/A	N/A
eggNOG-mapper	UHGV-1500046_3	1211844.CBLM010000023_gene988	94.0	1.61e-23	N/A	N/A
Pfam	UHGV-1500046_3	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-1500046_3	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-1500046_4	phrog_158	43.1	0.0000000000065	major tail protein	tail
UniRef90	UHGV-1500046_4	UniRef90_UPI00189F9192	207.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1500046_4	1232453.BAIF02000058_gene1634	90.5	3.05e-21	N/A	N/A
structural_annotation	UHGV-1500046_4	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1500046_5	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1500046_6	1298920.KI911353_gene2654	62.4	0.00000000102	N/A	N/A
eggNOG-mapper	UHGV-1500046_7	1121866.AUGK01000003_gene1432	76.3	5.12e-16	N/A	N/A
UniRef90	UHGV-1500046_8	UniRef90_D7GQN2	144.0	5.94151e-43	Phage QLRG family, putative DNA packaging	N/A
eggNOG-mapper	UHGV-1500046_8	1298920.KI911353_gene2658	53.9	0.0000000652	N/A	N/A
Pfam	UHGV-1500046_8	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-1500046_8	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1500046_9	phrog_1328	118.3	5e-35	major head protein	head and packaging
UniRef90	UHGV-1500046_9	UniRef90_UPI00189F9709	584.0	0	N/A	N/A
eggNOG-mapper	UHGV-1500046_9	665956.HMPREF1032_03619	225.0	0	N/A	N/A
Pfam	UHGV-1500046_9	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-1500046_9	PF17236,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1500046_10	UniRef90_A0A7C7EK05	69.7	0.0000000000273	N/A	N/A
PHROG	UHGV-1500046_11	phrog_2662	44.7	0.000000000001	portal protein	head and packaging
UniRef90	UHGV-1500046_11	UniRef90_A0A414B033	231.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1500046_11	1123263.AUKY01000015_gene1610	115.0	1.12e-29	cell adhesion	N/A
Pfam	UHGV-1500046_11	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1500046_11	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1500046_11	PF04233,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-1500046_14	phrog_64	227.2	0	portal protein	head and packaging
UniRef90	UHGV-1500046_14	UniRef90_A0A414B012	804.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1500046_14	1123263.AUKY01000015_gene1609	436.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1500046_14	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1500046_14	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1500046_15	phrog_38	152.6	2.8026e-45	terminase large subunit	head and packaging
UniRef90	UHGV-1500046_15	UniRef90_UPI0018A0C9C4	928.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1500046_15	1298920.KI911353_gene2682	302.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-1500046_15	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-1500046_15	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1500046_15	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
UniRef90	UHGV-1500046_17	UniRef90_UPI0018A0BC49	84.0	7.76e-20	helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-1500046_17	PF20075,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1500046_22	K03466	203.8	0	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	N/A
PHROG	UHGV-1500046_22	phrog_1358	174.8	0	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1500046_22	UniRef90_A0A1C5UE43	369.0	0	Stage III sporulation protein E	N/A
eggNOG-mapper	UHGV-1500046_22	684719.HIMB114_00011260	150.0	1.1e-38	DNA segregation ATPase FtsK SpoIIIE	N/A
PADLOC	UHGV-1500046_22	SspH_00004	94.0	1.2e-27	SspH	SSP
Pfam	UHGV-1500046_22	PF01580	N/A	N/A	FtsK/SpoIIIE family	FtsK_SpoIIIE
COG	UHGV-1500046_22	COG1674	N/A	N/A	DNA segregation ATPase FtsK/SpoIIIE or related protein	N/A
structural_annotation	UHGV-1500046_22	PF01580,MF_00350,TIGR03925,COG0433	N/A	N/A	N/A	N/A
UniRef90	UHGV-1500046_23	UniRef90_UPI001D07B715	72.8	0.00000000000199	DNA-packaging protein	N/A
structural_annotation	UHGV-1500046_23	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-1500046_25	K06919	74.6	1e-21	K06919; putative DNA primase/helicase	N/A
PHROG	UHGV-1500046_25	phrog_1156	301.7	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1500046_25	UniRef90_UPI00189C5EC8	851.0	0	phage/plasmid primase, P4 family	N/A
eggNOG-mapper	UHGV-1500046_25	431943.CKL_3236	322.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-1500046_25	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-1500046_25	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-1500046_25	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-1500046_25	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-1500046_25	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-1500046_25	PF08706,PF05272,PF02257,MF_04000,NF005477,COG3378	N/A	N/A	N/A	N/A
Pfam	UHGV-1500046_26	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-1500046_26	PF05223,NF003262	N/A	N/A	N/A	N/A
PHROG	UHGV-1500046_28	phrog_1829	143.0	1.49939e-42	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1500046_28	UniRef90_D7GQL9	414.0	0	Primase C terminal 1 (PriCT-1)./Bifunctional DNA primase/polymerase, N-terminal	N/A
eggNOG-mapper	UHGV-1500046_28	1121866.AUGK01000003_gene1409	213.0	0	Phage plasmid primase, P4 family domain protein	N/A
Pfam	UHGV-1500046_28	PF08708	N/A	N/A	Primase C terminal 1 (PriCT-1)	PriCT_1
COG	UHGV-1500046_28	COG4983	N/A	N/A	Primase-polymerase (Primpol) domain protein	N/A
structural_annotation	UHGV-1500046_28	PF08708,PF09250,COG4983	N/A	N/A	N/A	N/A
PHROG	UHGV-1500046_29	phrog_6721	287.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1500046_29	537007.BLAHAN_05521	263.0	0	N/A	N/A
structural_annotation	UHGV-1500046_29	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
KOfam	UHGV-1500046_32	K21636	311.3	0	nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]	N/A
PHROG	UHGV-1500046_32	phrog_487	648.2	0	NrdD-like anaerobic ribonucleotide reductase large subunit	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1500046_32	UniRef90_A0A1C5UEC4	1245.0	0	Anaerobic ribonucleoside-triphosphate reductase	N/A
eggNOG-mapper	UHGV-1500046_32	478749.BRYFOR_09741	1136.0	0	Ribonucleoside-triphosphate reductase	N/A
Pfam	UHGV-1500046_32	PF03477	N/A	N/A	ATP cone domain	ATP-cone
Pfam	UHGV-1500046_32	PF13597	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	NRDD
NCBIFam	UHGV-1500046_32	TIGR02487.1	N/A	N/A	anaerobic ribonucleoside-triphosphate reductase	N/A
COG	UHGV-1500046_32	COG1328	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	N/A
structural_annotation	UHGV-1500046_32	PF13597,PF03477,MF_00440,NF006732,COG1328	N/A	N/A	N/A	N/A
KOfam	UHGV-1500046_33	K04068	206.2	0	nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]	N/A
PHROG	UHGV-1500046_33	phrog_626	203.8	0	anaerobic ribonucleotide reductase small subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1500046_33	UniRef90_UPI0018A06F04	261.0	0	anaerobic ribonucleoside-triphosphate reductase activating protein	N/A
eggNOG-mapper	UHGV-1500046_33	476272.RUMHYD_00928	227.0	0	Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine	N/A
Pfam	UHGV-1500046_33	PF13353	N/A	N/A	4Fe-4S single cluster domain	Fer4_12
NCBIFam	UHGV-1500046_33	TIGR02491.1	N/A	N/A	anaerobic ribonucleoside-triphosphate reductase activating protein	N/A
COG	UHGV-1500046_33	COG0602	N/A	N/A	Organic radical activating enzyme NrdG/QueE	N/A
structural_annotation	UHGV-1500046_33	PF13353,MF_02059,TIGR02491,COG0602	N/A	N/A	N/A	N/A
PHROG	UHGV-1500046_34	phrog_229	121.3	7.4e-36	MazG-like pyrophosphatase	other
UniRef90	UHGV-1500046_34	UniRef90_UPI001D02B1F9	182.0	0	nucleoside triphosphate pyrophosphohydrolase family protein	N/A
eggNOG-mapper	UHGV-1500046_34	428125.CLOLEP_01391	111.0	5.25e-30	MazG nucleotide pyrophosphohydrolase domain	N/A
Pfam	UHGV-1500046_34	PF03819	N/A	N/A	MazG nucleotide pyrophosphohydrolase domain	MazG
COG	UHGV-1500046_34	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-1500046_34	PF03819,MF_01020,TIGR03188,COG1694	N/A	N/A	N/A	N/A
PHROG	UHGV-1500046_35	phrog_6568	58.8	7.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-1500046_35	428125.CLOLEP_01394	53.9	0.00000000782	N/A	N/A
PHROG	UHGV-1500046_36	phrog_478	127.1	6.4e-38	site-specific recombination directionality factor RDF	integration and excision
eggNOG-mapper	UHGV-1500046_36	1111121.HMPREF1247_0834	150.0	5.60519e-45	N/A	N/A
structural_annotation	UHGV-1500046_37	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-1500046_38	phrog_434	105.8	4e-31	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1500046_38	UniRef90_UPI00189E51C4	491.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-1500046_38	1121866.AUGK01000003_gene1405	318.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-1500046_38	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
COG	UHGV-1500046_38	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1500046_38	PF09588,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-1500046_40	phrog_236	94.9	1.6e-27	nucleotide kinase	other
UniRef90	UHGV-1500046_40	UniRef90_D7GQK6	136.0	1.84999e-40	N/A	N/A
eggNOG-mapper	UHGV-1500046_40	1123263.AUKY01000015_gene1590	91.3	2.05e-23	N/A	N/A
Pfam	UHGV-1500046_40	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-1500046_40	PF11753	N/A	N/A	N/A	N/A
PHROG	UHGV-1500046_41	phrog_6247	360.9	0	DNA topoisomerase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1500046_41	913865.DOT_1568	379.0	0	N/A	N/A
structural_annotation	UHGV-1500046_41	PF21180,MF_00132,NF003335,COG4026	N/A	N/A	N/A	N/A
PHROG	UHGV-1500046_42	phrog_155	72.5	2.6e-21	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1500046_42	UniRef90_D7GQK5	302.0	0	ERF superfamily	N/A
eggNOG-mapper	UHGV-1500046_42	1121866.AUGK01000003_gene1403	96.3	7.73e-20	DNA replication proofreading	N/A
Pfam	UHGV-1500046_42	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-1500046_42	COG0417	N/A	N/A	DNA polymerase B elongation subunit	N/A
structural_annotation	UHGV-1500046_42	PF04404	N/A	N/A	N/A	N/A
KOfam	UHGV-1500046_43	K00558	226.4	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1500046_43	phrog_1252	426.7	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1500046_43	UniRef90_UPI00189DB5D1	965.0	0	DNA polymerase elongation subunit (family B)	N/A
eggNOG-mapper	UHGV-1500046_43	1121866.AUGK01000003_gene1403	491.0	0	DNA replication proofreading	N/A
PADLOC	UHGV-1500046_43	MTase_II_00058	262.4	0	Type II methyltransferase	RM
Pfam	UHGV-1500046_43	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1500046_43	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1500046_43	COG0417	N/A	N/A	DNA polymerase B elongation subunit	N/A
PHROG	UHGV-1500046_44	phrog_21980	90.4	2.3e-26	N/A	unknown function
UniRef90	UHGV-1500046_44	UniRef90_A0A414AZZ4	194.0	0	N/A	N/A
eggNOG-mapper	UHGV-1500046_44	742733.HMPREF9469_05080	80.1	0.00000000000000203	N/A	N/A
Pfam	UHGV-1500046_44	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1500046_44	PF19789	N/A	N/A	N/A	N/A
KOfam	UHGV-1500046_45	K18959	189.8	0	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	N/A
PHROG	UHGV-1500046_45	phrog_16	187.3	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1500046_45	UniRef90_UPI0018A0BA7F	709.0	0	DEAD/DEAH box helicase family protein	N/A
eggNOG-mapper	UHGV-1500046_45	1232453.BAIF02000010_gene3343	499.0	0	Type III restriction protein res subunit	N/A
PADLOC	UHGV-1500046_45	mREase_IV_00005	52.0	0.0000000000000042	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1500046_45	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1500046_45	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1500046_45	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1500046_45	PF04851,PF16203,MF_01489,TIGR00603,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-1500046_46	phrog_843	43.8	0.0000000000029	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1500046_46	UniRef90_D7GQJ9	203.0	0	Archaeal holliday junction resolvase (Hjc)	N/A
eggNOG-mapper	UHGV-1500046_46	1232453.BAIF02000010_gene3342	109.0	1e-28	Recombination protein U	N/A
Pfam	UHGV-1500046_46	PF01870	N/A	N/A	Archaeal holliday junction resolvase (hjc)	Hjc
PHROG	UHGV-1500046_49	phrog_8	51.9	0.000000000000018	transcriptional regulator	transcription regulation
UniRef90	UHGV-1500046_49	UniRef90_A0A1C5UCE1	154.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1500046_49	97138.C820_00203	60.1	0.000000000907	Transcriptional	N/A
Pfam	UHGV-1500046_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1500046_49	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1500046_49	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1500046_50	K06400	383.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1500046_50	phrog_95	368.9	0	integrase	integration and excision
UniRef90	UHGV-1500046_50	UniRef90_D7GQJ5	717.0	0	Site-specific recombinases, DNA invertase Pin homologs	N/A
eggNOG-mapper	UHGV-1500046_50	411483.FAEPRAA2165_02542	346.0	0	N/A	N/A
Pfam	UHGV-1500046_50	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1500046_50	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1500046_50	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1500046_50	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1500046_50	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-1500046_51	K03749	52.5	0.0000000000000096	dedD; DedD protein	N/A
PHROG	UHGV-1500046_51	phrog_7698	100.2	3e-29	endolysin	lysis
UniRef90	UHGV-1500046_51	UniRef90_R6TSE7	93.2	2.76e-20	SPOR domain-containing protein	N/A
eggNOG-mapper	UHGV-1500046_51	665956.HMPREF1032_00684	77.4	0.0000000000000152	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1500046_51	PF05036	N/A	N/A	SPOR domain	SPOR
Pfam	UHGV-1500046_51	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-1500046_51	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A