UHGV-1523352 (vOTU-013911)

Viral Genome: UHGV-1523352

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-1523352
vOTU ID	vOTU-013911
Representative Genome?	Yes
Source	MGV
Original Genome ID	MGV-GENOME-0314275
Associated Biosample	SAMEA2042009
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	99.52 (High-quality)
Trimmed?	No
CheckV Viral Markers	20
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9791
Viral Hallmark Genes (geNomad)	6
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	60.27
Jumbo Phage?	No

Genome Content
Length (bps)	39,771
GC Content	42.46%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	56
CDS Density	93%
Average CDS Length (bps)	662.04
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.52)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1523352_3	K14059	135.8	4.79999e-40	int; integrase	N/A
PHROG	UHGV-1523352_3	phrog_1	163.1	0	integrase	integration and excision
UniRef90	UHGV-1523352_3	UniRef90_A0A3A6JBV3	696.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1523352_3	1280698.AUJS01000007_gene999	209.0	0	Phage integrase family	N/A
Pfam	UHGV-1523352_3	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1523352_3	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1523352_3	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1523352_4	UniRef90_A0A173W8P0	663.0	0	Virulence protein	N/A
eggNOG-mapper	UHGV-1523352_4	1035196.HMPREF9998_00638	521.0	0	Virulence protein RhuM family	N/A
Pfam	UHGV-1523352_4	PF13310	N/A	N/A	Virulence protein RhuM family	Virulence_RhuM
COG	UHGV-1523352_4	COG3943	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1523352_4	PF13310,TIGR02681,COG3943	N/A	N/A	N/A	N/A
PHROG	UHGV-1523352_5	phrog_20886	85.1	3.6e-25	N/A	unknown function
UniRef90	UHGV-1523352_5	UniRef90_UPI000C757FC8	64.7	0.00000000000377	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1523352_5	476272.RUMHYD_02825	76.6	6.98e-17	N/A	N/A
structural_annotation	UHGV-1523352_5	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-1523352_7	K22300	44.0	0.0000000000046	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1523352_7	phrog_2967	53.4	0.0000000000000041	transcriptional regulator	transcription regulation
UniRef90	UHGV-1523352_7	UniRef90_UPI000E7200D3	229.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1523352_7	1235798.C817_00620	120.0	2.21e-33	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1523352_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1523352_7	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1523352_7	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1523352_8	UniRef90_UPI000E7391FB	152.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1523352_8	1321782.HMPREF1986_02244	62.4	0.00000000000645	Helix-turn-helix domain	N/A
Pfam	UHGV-1523352_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1523352_8	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1523352_8	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1523352_9	UniRef90_R5VU56	99.8	5.28e-25	HTH_11 domain-containing protein	N/A
structural_annotation	UHGV-1523352_9	PF20063	N/A	N/A	N/A	N/A
PHROG	UHGV-1523352_11	phrog_434	178.1	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1523352_11	UniRef90_A0A173W7Z3	438.0	0	Putative phage-type endonuclease	N/A
eggNOG-mapper	UHGV-1523352_11	1095750.HMPREF9970_1677	300.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-1523352_11	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1523352_11	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1523352_11	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1523352_11	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-1523352_12	phrog_674	191.4	0	N/A	unknown function
UniRef90	UHGV-1523352_12	UniRef90_UPI00156D61E9	349.0	0	N/A	N/A
eggNOG-mapper	UHGV-1523352_12	1095750.HMPREF9970_1676	142.0	5.54e-38	N/A	N/A
Pfam	UHGV-1523352_12	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1523352_12	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-1523352_15	K07455	202.3	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1523352_15	phrog_148	222.0	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1523352_15	UniRef90_A0A173W8R4	662.0	0	p33	N/A
eggNOG-mapper	UHGV-1523352_15	742765.HMPREF9457_02107	347.0	0	RecT family	N/A
Pfam	UHGV-1523352_15	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1523352_15	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1523352_15	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1523352_15	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1523352_16	phrog_190	129.9	1.6e-38	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1523352_16	UniRef90_A0A3R6WN18	229.0	0	N/A	N/A
eggNOG-mapper	UHGV-1523352_16	1236514.BAKL01000051_gene3708	104.0	2.9e-27	N/A	N/A
Pfam	UHGV-1523352_16	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1523352_16	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-1523352_17	phrog_2562	220.9	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1523352_17	UniRef90_A0A822LMB7	597.0	0	N/A	N/A
eggNOG-mapper	UHGV-1523352_17	1256908.HMPREF0373_00661	145.0	1.16e-39	N/A	N/A
Pfam	UHGV-1523352_17	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-1523352_17	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-1523352_18	phrog_9804	236.0	0	N/A	unknown function
UniRef90	UHGV-1523352_18	UniRef90_A0A3A6JKE0	397.0	0	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-1523352_18	626523.GCWU000342_01038	136.0	3.85e-37	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-1523352_18	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1523352_18	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1523352_19	phrog_424	102.0	5.6e-30	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1523352_19	UniRef90_A0A2H4JC51	581.0	0	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	N/A
eggNOG-mapper	UHGV-1523352_19	411461.DORFOR_01142	579.0	0	N/A	N/A
COG	UHGV-1523352_19	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1523352_19	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1523352_21	PF17655,MF_00791,TIGR03780,COG2967	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1523352_22	PF06257,TIGR00739,COG4466	N/A	N/A	N/A	N/A
PHROG	UHGV-1523352_24	phrog_9300	102.1	5.9e-30	N/A	unknown function
PHROG	UHGV-1523352_26	phrog_17690	121.3	3.9e-36	N/A	unknown function
UniRef90	UHGV-1523352_26	UniRef90_A0A6L5XWF4	113.0	5.78e-30	3-dehydroquinate synthase	N/A
eggNOG-mapper	UHGV-1523352_26	33035.JPJF01000107_gene432	98.2	1.17e-24	N/A	N/A
PHROG	UHGV-1523352_27	phrog_36	61.5	1.6e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1523352_27	UniRef90_A0A371AT86	72.4	0.000000000000216	N/A	N/A
eggNOG-mapper	UHGV-1523352_27	97138.C820_00221	80.9	1.99e-17	sigma factor activity	N/A
COG	UHGV-1523352_27	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1523352_27	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-1523352_29	phrog_940	348.2	0	nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1523352_29	UniRef90_A0A173W6N8	698.0	0	ParB-like nuclease domain	N/A
eggNOG-mapper	UHGV-1523352_29	936154.STP_1604	336.0	0	N/A	N/A
PADLOC	UHGV-1523352_29	MTase_II_00015	97.8	1.6e-28	Type II methyltransferase	RM
Pfam	UHGV-1523352_29	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-1523352_29	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-1523352_29	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1523352_29	PF14386,PF02195,TIGR00180	N/A	N/A	N/A	N/A
PHROG	UHGV-1523352_31	phrog_5057	63.1	4.9e-19	N/A	unknown function
PHROG	UHGV-1523352_32	phrog_9479	167.1	0	N/A	unknown function
structural_annotation	UHGV-1523352_32	PF15529	N/A	N/A	N/A	N/A
PHROG	UHGV-1523352_33	phrog_2412	67.2	2.2e-19	N/A	unknown function
UniRef90	UHGV-1523352_33	UniRef90_UPI001C38E948	108.0	3.2e-27	KGG domain-containing protein	N/A
eggNOG-mapper	UHGV-1523352_33	1125712.HMPREF1316_1524	65.1	0.0000000000484	N/A	N/A
Pfam	UHGV-1523352_33	PF10685	N/A	N/A	Stress-induced bacterial acidophilic repeat motif	KGG
KOfam	UHGV-1523352_34	K06909	300.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1523352_34	phrog_3717	264.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-1523352_34	UniRef90_A0A173W6A0	849.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-1523352_34	1256908.HMPREF0373_00486	547.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1523352_34	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1523352_34	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1523352_34	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1523352_34	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1523352_34	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1523352_35	phrog_64	370.0	0	portal protein	head and packaging
UniRef90	UHGV-1523352_35	UniRef90_A0A173W966	977.0	0	Phage portal protein, SPP1 family	N/A
eggNOG-mapper	UHGV-1523352_35	877414.ATWA01000001_gene907	397.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-1523352_35	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-1523352_35	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-1523352_35	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1523352_36	phrog_2841	319.2	0	minor head protein	head and packaging
UniRef90	UHGV-1523352_36	UniRef90_A0A6N9K285	978.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1523352_36	1294142.CINTURNW_1685	269.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-1523352_36	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-1523352_36	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1523352_36	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1523352_36	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1523352_37	861454.HMPREF9099_02115	49.7	0.000000387	N/A	N/A
PHROG	UHGV-1523352_38	phrog_872	168.6	0	N/A	unknown function
UniRef90	UHGV-1523352_38	UniRef90_UPI0018C70BF8	203.0	0	N/A	N/A
eggNOG-mapper	UHGV-1523352_38	573413.Spirs_2170	196.0	0	N/A	N/A
Pfam	UHGV-1523352_38	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-1523352_38	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-1523352_38	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-1523352_39	phrog_172	115.2	6.5e-34	head scaffolding protein	head and packaging
UniRef90	UHGV-1523352_39	UniRef90_UPI00189A8A5B	122.0	3.17e-31	N/A	N/A
eggNOG-mapper	UHGV-1523352_39	1504823.CCMM01000008_gene1042	90.9	8.78e-20	N/A	N/A
Pfam	UHGV-1523352_39	PF14265	N/A	N/A	N/A	DUF4355
PHROG	UHGV-1523352_40	phrog_267	169.7	0	major head protein	head and packaging
UniRef90	UHGV-1523352_40	UniRef90_A0A173W8U9	533.0	0	p22 coat protein-gene protein 5	N/A
eggNOG-mapper	UHGV-1523352_40	1235800.C819_00485	394.0	0	P22 coat protein-protein 5 domain protein	N/A
structural_annotation	UHGV-1523352_40	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
Pfam	UHGV-1523352_42	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-1523352_42	PF05135	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1523352_43	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1523352_44	phrog_5	99.2	3.2e-29	tail completion or Neck1 protein	connector
UniRef90	UHGV-1523352_44	UniRef90_A0A173W5Z4	342.0	0	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-1523352_44	742733.HMPREF9469_01819	117.0	4.27e-31	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1523352_44	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1523352_44	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1523352_44	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1523352_45	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1523352_46	phrog_158	44.4	0.0000000000029	major tail protein	tail
UniRef90	UHGV-1523352_46	UniRef90_A0A173W733	278.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1523352_46	1209989.TepiRe1_1157	82.4	3.81e-18	Phage tail tube protein, TTP	N/A
Pfam	UHGV-1523352_46	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-1523352_46	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1523352_47	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-1523352_49	K10866	44.1	0.0000000000012	RAD50; DNA repair protein RAD50 [EC:3.6.-.-]	N/A
PHROG	UHGV-1523352_49	phrog_1535	147.3	0	tail length tape measure protein	tail
UniRef90	UHGV-1523352_49	UniRef90_A0A173W8C4	1373.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-1523352_49	397290.C810_01419	77.4	0.0000000000315	Transglycosylase SLT domain	N/A
COG	UHGV-1523352_49	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-1523352_50	phrog_1194	93.9	1.2e-27	N/A	unknown function
UniRef90	UHGV-1523352_50	UniRef90_R5Z572	73.6	0.0000000000000068	Putative phage protein	N/A
eggNOG-mapper	UHGV-1523352_50	1232453.BAIF02000058_gene1638	112.0	2.03e-30	N/A	N/A
Pfam	UHGV-1523352_50	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1523352_50	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1523352_51	phrog_6616	159.5	0	tail protein	tail
UniRef90	UHGV-1523352_51	UniRef90_UPI001D0763AB	258.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-1523352_51	1262449.CP6013_3213	144.0	1.31e-32	Phage minor structural protein	N/A
COG	UHGV-1523352_51	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-1523352_51	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
KOfam	UHGV-1523352_52	K16628	55.7	1.6e-16	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-1523352_52	phrog_15074	70.9	7.4e-21	N/A	unknown function
UniRef90	UHGV-1523352_52	UniRef90_A0A173W873	559.0	0	Collagen triple helix repeat (20 copies)	N/A
eggNOG-mapper	UHGV-1523352_52	471855.Shel_15430	125.0	2.27e-30	N/A	N/A
Pfam	UHGV-1523352_52	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-1523352_52	PF14874,NF038186	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1523352_53	1437603.BMON_1127	94.4	5.08e-18	N/A	N/A
PHROG	UHGV-1523352_54	phrog_199	88.2	8.6e-26	holin	lysis
UniRef90	UHGV-1523352_54	UniRef90_A0A173W8Y4	266.0	0	Phage-related holin (Lysis protein)	N/A
eggNOG-mapper	UHGV-1523352_54	742740.HMPREF9474_02333	206.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1523352_54	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1523352_54	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1523352_54	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1523352_54	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1523352_55	K07273	159.0	0	acm; lysozyme	N/A
PHROG	UHGV-1523352_55	phrog_291	168.7	0	endolysin	lysis
UniRef90	UHGV-1523352_55	UniRef90_A0A173W541	551.0	0	Lysozyme M1	N/A
eggNOG-mapper	UHGV-1523352_55	411474.COPEUT_02639	336.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1523352_55	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1523352_55	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-1523352_55	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-1523352_55	PF01183,PF01476,TIGR02899,COG3757,COG1388	N/A	N/A	N/A	N/A
UniRef90	UHGV-1523352_56	UniRef90_D5HF53	392.0	0	HTH cro/C1-type domain-containing protein	N/A