UHGV-1523421 (vOTU-073781)

Viral Genome: UHGV-1523421

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-1523421
vOTU ID	vOTU-073781
Representative Genome?	Yes
Source	MGV
Original Genome ID	MGV-GENOME-0330299
Associated Biosample	SAMEA3136718
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	99.9 (High-quality)
Trimmed?	No
CheckV Viral Markers	18
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9776
Viral Hallmark Genes (geNomad)	13
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	36.86
Jumbo Phage?	No

Genome Content
Length (bps)	46,028
GC Content	32.75%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	79
CDS Density	89%
Average CDS Length (bps)	516.87
Total tRNA Genes	3
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1523421_1	K14059	197.0	0	int; integrase	N/A
PHROG	UHGV-1523421_1	phrog_1	177.2	0	integrase	integration and excision
UniRef90	UHGV-1523421_1	UniRef90_A0A395WBW7	744.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1523421_1	1235796.C815_00955	299.0	0	DNA integration	N/A
Pfam	UHGV-1523421_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1523421_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1523421_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1523421_2	phrog_5059	94.6	9.4e-28	N/A	unknown function
UniRef90	UHGV-1523421_2	UniRef90_A0A395WDV4	244.0	0	N/A	N/A
eggNOG-mapper	UHGV-1523421_2	883156.HMPREF9282_00200	67.8	0.00000000000936	N/A	N/A
Pfam	UHGV-1523421_2	PF08861	N/A	N/A	N/A	DUF1828
UniRef90	UHGV-1523421_3	UniRef90_A0A6L5P847	73.9	0.000000000000112	PBECR4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1523421_3	742735.HMPREF9467_02838	65.1	0.0000000000598	N/A	N/A
Pfam	UHGV-1523421_3	PF18813	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4	PBECR4
UniRef90	UHGV-1523421_4	UniRef90_UPI000E43E2F6	108.0	2.08e-26	heavy metal-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-1523421_4	517418.Ctha_1419	107.0	8.43e-25	Putative heavy-metal-binding	N/A
Pfam	UHGV-1523421_4	PF01906	N/A	N/A	Putative heavy-metal-binding	YbjQ_1
COG	UHGV-1523421_4	COG0393	N/A	N/A	N/A	N/A
KOfam	UHGV-1523421_5	K18830	65.0	1.4e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1523421_5	phrog_2967	50.9	0.000000000000028	transcriptional regulator	transcription regulation
UniRef90	UHGV-1523421_5	UniRef90_A0A413CSI3	269.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1523421_5	999413.HMPREF1094_02045	102.0	2.41e-26	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1523421_5	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1523421_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1523421_5	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1523421_9	K04763	137.9	1.10001e-40	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1523421_9	phrog_1	120.2	2.1e-35	integrase	integration and excision
UniRef90	UHGV-1523421_9	UniRef90_A0A395W9T7	574.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1523421_9	908340.HMPREF9406_2589	229.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1523421_9	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1523421_9	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1523421_9	PF00589,PF13495,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1523421_14	phrog_428	155.4	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1523421_14	UniRef90_A0A395WBX6	504.0	0	Phg_2220_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1523421_14	1194526.A284_08025	143.0	9.67e-39	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-1523421_14	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-1523421_14	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-1523421_14	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1523421_14	PF09524,PF08679,MF_01909,TIGR02220,NF040939,COG1675	N/A	N/A	N/A	N/A
KOfam	UHGV-1523421_15	K02315	120.6	1.7e-35	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1523421_15	phrog_50	107.8	1.2e-31	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1523421_15	UniRef90_A0A395WER8	544.0	0	Bac_DnaA domain-containing protein	N/A
eggNOG-mapper	UHGV-1523421_15	1232446.BAIE02000011_gene1611	133.0	6.28e-35	N/A	N/A
Pfam	UHGV-1523421_15	PF00308	N/A	N/A	Bacterial dnaA protein	Bac_DnaA
COG	UHGV-1523421_15	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1523421_15	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1523421_18	phrog_4601	50.1	0.000000000000043	N/A	unknown function
structural_annotation	UHGV-1523421_18	PF17888	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1523421_22	PF16789	N/A	N/A	N/A	N/A
UniRef90	UHGV-1523421_24	UniRef90_A0A395WBY6	56.6	0.000000211	N/A	N/A
Pfam	UHGV-1523421_24	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-1523421_26	phrog_954	251.2	0	DNA methyltransferase	other
UniRef90	UHGV-1523421_26	UniRef90_A0A413UEW6	341.0	0	SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-1523421_26	1321779.HMPREF1984_00119	253.0	0	methyltransferase	N/A
PADLOC	UHGV-1523421_26	MTase_II_00074	250.5	0	Type II methyltransferase	RM
COG	UHGV-1523421_26	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
structural_annotation	UHGV-1523421_26	PF01170,MF_01057,TIGR00446,COG4123	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1523421_27	PF17399	N/A	N/A	N/A	N/A
PHROG	UHGV-1523421_28	phrog_22292	41.2	0.000000000027	N/A	unknown function
structural_annotation	UHGV-1523421_29	PF01104,NF041014	N/A	N/A	N/A	N/A
UniRef90	UHGV-1523421_35	UniRef90_A0A413UEX6	292.0	0	N/A	N/A
Pfam	UHGV-1523421_35	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-1523421_35	PF07374,NF008895	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1523421_36	PF10879	N/A	N/A	N/A	N/A
PHROG	UHGV-1523421_37	phrog_2316	42.4	0.000000000012	N/A	unknown function
UniRef90	UHGV-1523421_37	UniRef90_A0A3E4YBW5	108.0	5.27e-29	N/A	N/A
eggNOG-mapper	UHGV-1523421_37	1007103.AFHW01000207_gene1752	57.4	0.000000000884	N/A	N/A
structural_annotation	UHGV-1523421_37	PF16475,MF_00436,NF033216	N/A	N/A	N/A	N/A
PHROG	UHGV-1523421_47	phrog_119	59.3	6.6e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1523421_47	UniRef90_A0A395WA48	262.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1523421_47	1211814.CAPG01000074_gene3460	66.2	0.00000000000168	HNH endonuclease	N/A
Pfam	UHGV-1523421_47	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1523421_47	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1523421_48	phrog_361	82.2	5.1e-24	terminase small subunit	head and packaging
UniRef90	UHGV-1523421_48	UniRef90_A0A7C6YMQ8	72.0	0.0000000000000923	P27 family phage terminase small subunit	N/A
Pfam	UHGV-1523421_48	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-1523421_48	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1523421_48	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1523421_49	phrog_9	308.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-1523421_49	UniRef90_A0A395WD03	1119.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1523421_49	411471.SUBVAR_05848	546.0	0	large subunit	N/A
Pfam	UHGV-1523421_49	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1523421_49	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1523421_49	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1523421_49	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1523421_50	phrog_12	105.7	3.2e-31	portal protein	head and packaging
UniRef90	UHGV-1523421_50	UniRef90_A0A395W9X2	829.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1523421_50	1203606.HMPREF1526_01337	287.0	0	Portal protein	N/A
Pfam	UHGV-1523421_50	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1523421_50	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1523421_50	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1523421_51	K06904	87.7	1.6e-25	N/A	N/A
PHROG	UHGV-1523421_51	phrog_80	116.3	3.7e-34	head maturation protease	head and packaging
UniRef90	UHGV-1523421_51	UniRef90_A0A413UET6	354.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-1523421_51	411470.RUMGNA_02064	176.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-1523421_51	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1523421_51	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1523421_51	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1523421_51	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1523421_52	phrog_10	80.8	1.8e-23	major head protein	head and packaging
UniRef90	UHGV-1523421_52	UniRef90_A0A395WF70	815.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1523421_52	1536774.H70357_10630	162.0	1.3004e-42	Phage capsid family	N/A
Pfam	UHGV-1523421_52	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1523421_52	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1523421_52	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1523421_52	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1523421_53	phrog_5223	51.9	0.000000000000011	neck protein	connector
UniRef90	UHGV-1523421_53	UniRef90_A0A374RXD1	82.4	1.54e-18	DNA-packaging protein	N/A
structural_annotation	UHGV-1523421_53	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1523421_54	phrog_1951	71.0	1.1e-20	head-tail adaptor	connector
UniRef90	UHGV-1523421_54	UniRef90_A0A395WC07	225.0	0	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-1523421_54	1211814.CAPG01000074_gene3451	67.4	0.000000000000373	head-tail adaptor	N/A
NCBIFam	UHGV-1523421_54	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-1523421_54	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1523421_54	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-1523421_55	UniRef90_C3DN78	51.2	0.00000576	Prophage pi2 protein 38	N/A
structural_annotation	UHGV-1523421_55	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-1523421_56	UniRef90_A0A374RUJ8	138.0	1.66e-39	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1523421_56	86416.Clopa_0344	55.5	0.0000000682	N/A	N/A
structural_annotation	UHGV-1523421_56	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1523421_57	phrog_88	140.3	9.90017e-42	major tail protein	tail
UniRef90	UHGV-1523421_57	UniRef90_A0A395WA58	327.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1523421_57	1111134.HMPREF1253_0377	142.0	6.33e-40	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1523421_57	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1523421_57	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1523421_58	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1523421_59	phrog_3033	40.2	0.000000000031	N/A	unknown function
KOfam	UHGV-1523421_60	K20478	65.0	8.2e-20	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-1523421_60	phrog_13339	344.5	0	tail length tape measure protein	tail
UniRef90	UHGV-1523421_60	UniRef90_A0A395WD11	986.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1523421_60	423476.A3F654_9CAUD	240.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-1523421_60	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1523421_60	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
structural_annotation	UHGV-1523421_60	PF10145,TIGR01760,TIGR02971,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1523421_61	PF05939,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1523421_62	phrog_1067	59.3	4.6e-23	minor head protein	head and packaging
eggNOG-mapper	UHGV-1523421_62	1232446.BAIE02000002_gene836	68.9	0.00000000231	Phage minor structural protein	N/A
NCBIFam	UHGV-1523421_62	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1523421_62	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1523421_62	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1523421_63	PF10651,COG5513	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1523421_64	PF05895,MF_04116,NF010681,COG1361	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1523421_65	PF16407,TIGR02657,COG3794	N/A	N/A	N/A	N/A
PHROG	UHGV-1523421_67	phrog_19280	81.8	5.8e-24	N/A	unknown function
UniRef90	UHGV-1523421_67	UniRef90_A0A413UF00	645.0	0	N/A	N/A
eggNOG-mapper	UHGV-1523421_67	1160721.RBI_I01569	100.0	3.46e-20	N/A	N/A
Pfam	UHGV-1523421_67	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1523421_67	PF19789	N/A	N/A	N/A	N/A
UniRef90	UHGV-1523421_74	UniRef90_A0A8F0WFQ8	69.7	0.000000000103	Outer capsid protein/viral fiber	N/A
eggNOG-mapper	UHGV-1523421_74	476272.RUMHYD_01770	114.0	1.27e-28	N/A	N/A
PHROG	UHGV-1523421_75	phrog_20016	66.5	3e-19	N/A	unknown function
UniRef90	UHGV-1523421_75	UniRef90_A0A395WF88	265.0	0	BclA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1523421_75	1226322.HMPREF1545_00077	62.0	0.000000000297	N/A	N/A
Pfam	UHGV-1523421_75	PF18573	N/A	N/A	BclA C-terminal domain	BclA_C
structural_annotation	UHGV-1523421_75	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1523421_77	phrog_443	54.0	0.0000000000000046	holin	lysis
UniRef90	UHGV-1523421_77	UniRef90_A0A2U2ELA1	78.6	9.53e-18	Membrane protein	N/A
eggNOG-mapper	UHGV-1523421_77	476272.RUMHYD_01759	85.1	5.63e-21	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1523421_77	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1523421_77	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-1523421_79	K01447	65.8	8.3e-19	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1523421_79	phrog_7698	168.1	0	endolysin	lysis
UniRef90	UHGV-1523421_79	UniRef90_A0A413UF85	699.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-1523421_79	293826.Amet_2548	145.0	9.27e-38	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1523421_79	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1523421_79	PF08460	N/A	N/A	Bacterial SH3 domain	SH3_5
COG	UHGV-1523421_79	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-1523421_79	PF01510,PF18342,PF08239,MF_04111,NF040670,NF008758,COG5632	N/A	N/A	N/A	N/A