UHGV-1527539 (vOTU-128136)

Viral Genome: UHGV-1527539

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-1527539
vOTU ID	vOTU-128136
Representative Genome?	Yes
Source	MGV
Original Genome ID	MGV-GENOME-0217014
Associated Biosample	SAMEA3665011
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	50.46 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	7
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9726
Viral Hallmark Genes (geNomad)	4
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	12.99
Jumbo Phage?	No

Genome Content
Length (bps)	19,338
GC Content	27.95%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	40
CDS Density	92%
Average CDS Length (bps)	444.75
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 50.46)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1527539_1	K07729	45.0	0.0000000000022	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1527539_1	phrog_3	42.9	0.000000000019	transcriptional repressor	transcription regulation
UniRef90	UHGV-1527539_1	UniRef90_A0A3B8SUZ2	82.0	5.48e-19	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1527539_1	936375.HMPREF1152_1045	59.7	0.0000000000455	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1527539_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1527539_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1527539_1	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1527539_2	PF11372	N/A	N/A	N/A	N/A
PHROG	UHGV-1527539_4	phrog_186	56.2	6.2e-16	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1527539_4	1123299.AUKZ01000018_gene209	56.6	0.000000744	Replication initiation and membrane attachment	N/A
Pfam	UHGV-1527539_4	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-1527539_4	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1527539_4	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-1527539_4	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1527539_4	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1527539_5	PF11417,PF08209	N/A	N/A	N/A	N/A
KOfam	UHGV-1527539_6	K03111	62.3	1.3e-17	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1527539_6	phrog_44	59.3	1.1e-16	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1527539_6	UniRef90_A0A847E283	107.0	4.29e-28	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1527539_6	406124.ACPC01000020_gene3960	80.5	2.54e-17	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1527539_6	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-1527539_6	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1527539_6	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1527539_8	phrog_155	60.2	3.9e-17	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1527539_8	UniRef90_UPI000F63F93F	100.0	2.02e-23	ERF family protein	N/A
eggNOG-mapper	UHGV-1527539_8	1415775.U729_2586	89.0	3.5e-19	ERF superfamily	N/A
Pfam	UHGV-1527539_8	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1527539_8	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1527539_9	phrog_434	99.7	3.1e-29	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1527539_9	UniRef90_A0A350H2L7	329.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1527539_9	1122146.AUHP01000010_gene1042	202.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-1527539_9	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
COG	UHGV-1527539_9	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1527539_9	PF10926,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-1527539_11	K03111	113.5	3.3e-33	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1527539_11	phrog_44	116.4	2.7e-34	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1527539_11	UniRef90_A0A350H2L8	107.0	3.96e-27	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1527539_11	1397699.JNIS01000001_gene1537	97.4	1.61e-23	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1527539_11	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1527539_11	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1527539_11	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1527539_11	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1527539_11	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1527539_12	phrog_72	47.4	0.00000000000031	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1527539_12	1408437.JNJN01000039_gene370	53.9	0.00000087	N/A	N/A
structural_annotation	UHGV-1527539_12	PF05772,NF007281	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1527539_15	PF02559,MF_01194,TIGR02097	N/A	N/A	N/A	N/A
PHROG	UHGV-1527539_16	phrog_803	57.7	2.3e-16	host nuclease inhibitor	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1527539_16	UniRef90_R7IG32	59.3	0.000000000306	Orf31	N/A
eggNOG-mapper	UHGV-1527539_16	1229517.AMFD01000018_gene199	45.8	0.00000819	N/A	N/A
structural_annotation	UHGV-1527539_22	PF07011,MF_00683,NF041454	N/A	N/A	N/A	N/A
PHROG	UHGV-1527539_29	phrog_625	72.4	5.3e-21	N/A	unknown function
eggNOG-mapper	UHGV-1527539_29	1235800.C819_02245	97.1	2.75e-22	N/A	N/A
PHROG	UHGV-1527539_32	phrog_7839	75.2	7.3e-22	N/A	unknown function
eggNOG-mapper	UHGV-1527539_32	202954.BBNK01000034_gene3794	130.0	2.15e-37	N/A	N/A
structural_annotation	UHGV-1527539_33	PF15456	N/A	N/A	N/A	N/A
KOfam	UHGV-1527539_34	K07474	52.2	0.00000000000002	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1527539_34	phrog_51	67.9	2e-19	terminase small subunit	head and packaging
UniRef90	UHGV-1527539_34	UniRef90_UPI001A8E67D4	87.0	3.67e-19	terminase	N/A
eggNOG-mapper	UHGV-1527539_34	764299.STRIC_2523	69.3	0.000000000000729	DNA packaging	N/A
Pfam	UHGV-1527539_34	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1527539_34	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1527539_34	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-1527539_35	K21523	53.4	1.4e-28	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-1527539_35	phrog_2	99.5	5.2e-29	terminase large subunit	head and packaging
UniRef90	UHGV-1527539_35	UniRef90_UPI00189AAAC0	525.0	0	DNA packaging protein	N/A
eggNOG-mapper	UHGV-1527539_35	693746.OBV_23980	469.0	0	phage Terminase large subunit	N/A
COG	UHGV-1527539_35	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-1527539_35	PF03237,PF17289,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1527539_37	phrog_156	101.4	6e-30	portal protein	head and packaging
UniRef90	UHGV-1527539_37	UniRef90_A0A8D9UHD1	325.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-1527539_37	1121091.AUMP01000003_gene2583	263.0	0	N/A	N/A
structural_annotation	UHGV-1527539_37	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-1527539_39	phrog_1357	220.4	0	major head protein	head and packaging
UniRef90	UHGV-1527539_39	UniRef90_A0A8D9UHB3	276.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-1527539_39	696281.Desru_1092	247.0	0	N/A	N/A
NCBIFam	UHGV-1527539_39	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1527539_39	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A