UHGV-1537988 (vOTU-014059)

Viral Genome: UHGV-1537988

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-1537988
vOTU ID	vOTU-014059
Representative Genome?	Yes
Source	MGV
Original Genome ID	MGV-GENOME-0259379
Associated Biosample	SAMEA2784474
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	95.53 (High-quality)
Trimmed?	No
CheckV Viral Markers	20
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9784
Viral Hallmark Genes (geNomad)	10
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	36.25
Jumbo Phage?	No

Genome Content
Length (bps)	33,230
GC Content	41.35%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	57
CDS Density	90%
Average CDS Length (bps)	526.79
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 95.53)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1537988_1	K06400	266.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1537988_1	phrog_95	299.7	0	integrase	integration and excision
UniRef90	UHGV-1537988_1	UniRef90_UPI00156F85ED	890.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1537988_1	411461.DORFOR_00037	684.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1537988_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1537988_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1537988_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1537988_1	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-1537988_2	phrog_7115	138.9	1.49995e-41	N/A	unknown function
UniRef90	UHGV-1537988_2	UniRef90_A0A396KU40	310.0	0	PH domain-containing protein	N/A
eggNOG-mapper	UHGV-1537988_2	1280698.AUJS01000007_gene1000	315.0	0	Bacterial PH domain	N/A
Pfam	UHGV-1537988_2	PF08000	N/A	N/A	Bacterial PH domain	bPH_1
KOfam	UHGV-1537988_4	K18830	69.1	7.9e-20	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1537988_4	phrog_8	50.0	0.00000000000003	transcriptional regulator	transcription regulation
UniRef90	UHGV-1537988_4	UniRef90_A0A6N9JS36	266.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1537988_4	1280698.AUJS01000007_gene1002	205.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1537988_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1537988_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1537988_4	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1537988_5	phrog_28456	48.1	0.00000000000022	N/A	unknown function
PHROG	UHGV-1537988_12	phrog_3584	133.4	1.4e-39	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1537988_12	411461.DORFOR_01138	330.0	0	N/A	N/A
structural_annotation	UHGV-1537988_12	PF01446	N/A	N/A	N/A	N/A
KOfam	UHGV-1537988_14	K03469	54.6	0.000000000000002	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-1537988_14	phrog_531	57.4	2.6e-16	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1537988_14	UniRef90_A0A6N9JSQ7	265.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1537988_14	1280698.AUJS01000007_gene1015	257.0	0	RNA-DNA hybrid ribonuclease activity	N/A
Pfam	UHGV-1537988_14	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-1537988_14	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-1537988_14	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1537988_15	1280698.AUJS01000007_gene1016	301.0	0	N/A	N/A
PHROG	UHGV-1537988_16	phrog_4433	57.9	3.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-1537988_16	1280698.AUJS01000007_gene1017	382.0	0	N/A	N/A
structural_annotation	UHGV-1537988_16	PF12120,NF000318	N/A	N/A	N/A	N/A
PHROG	UHGV-1537988_17	phrog_8470	208.0	0	N/A	unknown function
UniRef90	UHGV-1537988_17	UniRef90_UPI001C01E393	881.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1537988_17	1280698.AUJS01000007_gene1018	1431.0	0	N/A	N/A
Pfam	UHGV-1537988_17	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1537988_17	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-1537988_18	phrog_15077	81.7	3.4e-24	N/A	unknown function
UniRef90	UHGV-1537988_18	UniRef90_A0A3E3IZW1	245.0	0	N/A	N/A
eggNOG-mapper	UHGV-1537988_18	1280698.AUJS01000007_gene1019	654.0	0	N/A	N/A
PHROG	UHGV-1537988_19	phrog_7566	105.2	2.6e-31	N/A	unknown function
eggNOG-mapper	UHGV-1537988_19	1280698.AUJS01000007_gene1020	238.0	0	N/A	N/A
PHROG	UHGV-1537988_21	phrog_8684	64.0	2.1e-18	N/A	unknown function
UniRef90	UHGV-1537988_21	UniRef90_UPI001C0F317C	106.0	5.9e-26	YopX family protein	N/A
eggNOG-mapper	UHGV-1537988_21	457412.RSAG_01162	88.6	6.92e-20	YopX protein	N/A
structural_annotation	UHGV-1537988_21	PF09643,TIGR01671	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1537988_22	PF07870,TIGR02501	N/A	N/A	N/A	N/A
PHROG	UHGV-1537988_25	phrog_2316	202.4	0	N/A	unknown function
UniRef90	UHGV-1537988_25	UniRef90_UPI000400DA88	393.0	0	N/A	N/A
eggNOG-mapper	UHGV-1537988_25	1280698.AUJS01000007_gene1022	393.0	0	N/A	N/A
Pfam	UHGV-1537988_25	PF16475	N/A	N/A	N/A	DUF5052
structural_annotation	UHGV-1537988_25	PF16475	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1537988_28	742765.HMPREF9457_02112	51.6	0.00000107	N/A	N/A
structural_annotation	UHGV-1537988_28	PF21220,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-1537988_29	phrog_36	52.3	0.00000000000001	transcriptional regulator	transcription regulation
UniRef90	UHGV-1537988_29	UniRef90_A0A416MN03	118.0	7.92e-31	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1537988_29	1256908.HMPREF0373_00671	191.0	0	N/A	N/A
structural_annotation	UHGV-1537988_29	PF04545,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1537988_30	phrog_338	104.0	1.7e-30	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1537988_30	UniRef90_UPI0015708A7C	246.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1537988_30	1280698.AUJS01000007_gene1032	223.0	0	HNH endonuclease domain protein	N/A
Pfam	UHGV-1537988_30	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1537988_30	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1537988_30	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-1537988_31	phrog_104	281.5	0	portal protein	head and packaging
UniRef90	UHGV-1537988_31	UniRef90_UPI001A9C29A4	575.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1537988_31	1280698.AUJS01000007_gene1033	814.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-1537988_31	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1537988_32	phrog_2494	393.5	0	minor head protein	head and packaging
UniRef90	UHGV-1537988_32	UniRef90_UPI00156EC2C0	755.0	0	polymorphic toxin type 50 domain-containing protein	N/A
eggNOG-mapper	UHGV-1537988_32	1280698.AUJS01000007_gene1034	741.0	0	cell adhesion	N/A
Pfam	UHGV-1537988_32	PF15542	N/A	N/A	Bacterial toxin 50	Ntox50
COG	UHGV-1537988_32	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1537988_32	PF15542	N/A	N/A	N/A	N/A
PHROG	UHGV-1537988_33	phrog_1865	51.4	0.000000000000015	N/A	unknown function
structural_annotation	UHGV-1537988_33	PF07073,MF_00436,NF008636,COG4568	N/A	N/A	N/A	N/A
PHROG	UHGV-1537988_34	phrog_17688	346.2	0	N/A	unknown function
UniRef90	UHGV-1537988_34	UniRef90_R6SFU1	917.0	0	Putative phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1537988_34	1280698.AUJS01000007_gene1036	915.0	0	phage terminase, large subunit	N/A
COG	UHGV-1537988_34	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1537988_34	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1537988_35	phrog_233	119.5	1.8e-36	head scaffolding protein	head and packaging
UniRef90	UHGV-1537988_35	UniRef90_A0A0X8USY7	123.0	6.76e-33	Phage scaffold protein	N/A
eggNOG-mapper	UHGV-1537988_35	1280698.AUJS01000007_gene1037	273.0	0	N/A	N/A
Pfam	UHGV-1537988_35	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1537988_35	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1537988_36	phrog_32396	145.2	9.66896e-44	N/A	unknown function
UniRef90	UHGV-1537988_36	UniRef90_UPI001961D35B	476.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1537988_36	1280698.AUJS01000007_gene1038	565.0	0	Phage capsid family	N/A
structural_annotation	UHGV-1537988_36	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1537988_37	phrog_36603	73.4	1.9e-21	N/A	unknown function
PHROG	UHGV-1537988_38	phrog_137	110.5	7.9e-33	head-tail adaptor Ad1	connector
UniRef90	UHGV-1537988_38	UniRef90_A0A1C5Y9F2	189.0	0	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-1537988_38	1280698.AUJS01000007_gene1040	259.0	0	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-1537988_38	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-1537988_38	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-1537988_39	phrog_501	92.3	4.1e-27	head closure Hc1	connector
UniRef90	UHGV-1537988_39	UniRef90_Q7Y4I1	132.0	5.63e-38	Gp43	N/A
eggNOG-mapper	UHGV-1537988_39	1280698.AUJS01000007_gene1041	227.0	0	N/A	N/A
structural_annotation	UHGV-1537988_39	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1537988_40	phrog_387	45.0	0.00000000000091	neck protein	connector
eggNOG-mapper	UHGV-1537988_40	1289597.M1PKU8_9CAUD	47.0	0.00000624	N/A	N/A
PHROG	UHGV-1537988_41	phrog_123	54.8	0.0000000000000018	tail terminator	connector
eggNOG-mapper	UHGV-1537988_41	1280698.AUJS01000007_gene1043	205.0	0	N/A	N/A
structural_annotation	UHGV-1537988_41	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-1537988_42	phrog_117	174.6	0	major tail protein	tail
UniRef90	UHGV-1537988_42	UniRef90_UPI001F18A06D	279.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1537988_42	1280698.AUJS01000007_gene1044	361.0	0	domain, Protein	N/A
COG	UHGV-1537988_42	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1537988_42	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1537988_43	phrog_1526	101.3	5.3e-30	N/A	unknown function
UniRef90	UHGV-1537988_43	UniRef90_A0A1Q8EF45	70.5	0.0000000000000686	N/A	N/A
eggNOG-mapper	UHGV-1537988_43	665950.HMPREF1025_02524	75.5	1.11e-16	N/A	N/A
PHROG	UHGV-1537988_44	phrog_1633	163.4	0	N/A	unknown function
UniRef90	UHGV-1537988_44	UniRef90_UPI00157064A0	145.0	1.10983e-42	N/A	N/A
eggNOG-mapper	UHGV-1537988_44	1280698.AUJS01000007_gene1046	243.0	0	N/A	N/A
Pfam	UHGV-1537988_44	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-1537988_44	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-1537988_45	phrog_6900	257.4	0	tail length tape measure protein	tail
UniRef90	UHGV-1537988_45	UniRef90_A0A174L0T5	560.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1537988_45	1280698.AUJS01000007_gene1047	832.0	0	nuclear chromosome segregation	N/A
COG	UHGV-1537988_45	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1537988_45	PF20155,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-1537988_46	phrog_538	199.0	0	minor tail protein	tail
UniRef90	UHGV-1537988_46	UniRef90_UPI001F3E20C1	498.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-1537988_46	1280698.AUJS01000007_gene1049	660.0	0	N/A	N/A
Pfam	UHGV-1537988_46	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-1537988_46	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1537988_47	phrog_25635	289.0	0	N/A	unknown function
eggNOG-mapper	UHGV-1537988_47	1280698.AUJS01000007_gene1050	302.0	0	N/A	N/A
structural_annotation	UHGV-1537988_47	PF20747	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1537988_48	411461.DORFOR_01178	84.0	5.58e-18	N/A	N/A
PHROG	UHGV-1537988_49	phrog_12931	101.2	7e-30	N/A	unknown function
eggNOG-mapper	UHGV-1537988_49	411461.DORFOR_00728	202.0	0	N/A	N/A
PHROG	UHGV-1537988_50	phrog_1382	72.7	2.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-1537988_50	411461.DORFOR_00727	75.1	1.13e-17	N/A	N/A
structural_annotation	UHGV-1537988_50	NF040910	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1537988_51	931276.Cspa_c46510	69.3	0.0000000000519	N/A	N/A
PHROG	UHGV-1537988_52	phrog_199	81.1	1.3e-23	holin	lysis
UniRef90	UHGV-1537988_52	UniRef90_A6BEP6	295.0	0	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-1537988_52	411462.DORLON_00766	295.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1537988_52	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1537988_52	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1537988_52	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1537988_52	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1537988_53	phrog_1048	198.2	0	N/A	unknown function
UniRef90	UHGV-1537988_53	UniRef90_A0A395V4Z5	302.0	0	N/A	N/A
eggNOG-mapper	UHGV-1537988_53	457412.RSAG_01107	268.0	0	N/A	N/A
Pfam	UHGV-1537988_53	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-1537988_53	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-1537988_53	PF11195	N/A	N/A	N/A	N/A
KOfam	UHGV-1537988_55	K01448	108.9	5.4e-32	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1537988_55	phrog_435	180.8	0	endolysin	lysis
UniRef90	UHGV-1537988_55	UniRef90_A0A174JR12	489.0	0	N-acetylmuramoyl-L-alanine amidase LytC	N/A
eggNOG-mapper	UHGV-1537988_55	411461.DORFOR_01187	167.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1537988_55	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-1537988_55	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1537988_55	PF01520,PF18342,MF_00417,TIGR02883,COG0860,COG4991	N/A	N/A	N/A	N/A
KOfam	UHGV-1537988_56	K02051	42.9	0.0000000000089	ABC.SN.S; NitT/TauT family transport system substrate-binding protein	N/A
UniRef90	UHGV-1537988_56	UniRef90_UPI001570A6DA	161.0	0	ABC transporter substrate-binding protein	N/A
eggNOG-mapper	UHGV-1537988_56	411462.DORLON_01446	159.0	0	COG COG0715 ABC-type nitrate sulfonate bicarbonate transport systems, periplasmic components	N/A
Pfam	UHGV-1537988_56	PF09084	N/A	N/A	NMT1/THI5 like	NMT1
COG	UHGV-1537988_56	COG0715	N/A	N/A	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	N/A
PHROG	UHGV-1537988_57	phrog_25642	63.8	2.3e-18	N/A	unknown function
UniRef90	UHGV-1537988_57	UniRef90_A0A6L8RZT9	274.0	0	TetR/AcrR family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1537988_57	471875.RUMLAC_02592	204.0	0	tetR family	N/A
COG	UHGV-1537988_57	COG1309	N/A	N/A	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	N/A