UHGV-1538398 (vOTU-155370)

Viral Genome: UHGV-1538398

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-1538398
vOTU ID	vOTU-155370
Representative Genome?	Yes
Source	MGV
Original Genome ID	MGV-GENOME-0190927
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	62.09 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	14
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9801
Viral Hallmark Genes (geNomad)	8
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	37.13
Jumbo Phage?	No

Genome Content
Length (bps)	25,445
GC Content	32.82%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	38
CDS Density	93%
Average CDS Length (bps)	622.58
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 62.09)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1538398_1	phrog_88	66.0	5.7e-19	major tail protein	tail
UniRef90	UHGV-1538398_1	UniRef90_A0A133ZZV4	333.0	0	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1538398_1	1408438.JADD01000021_gene415	137.0	1.41e-37	N/A	N/A
NCBIFam	UHGV-1538398_1	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1538398_1	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-1538398_2	UniRef90_A0A133ZZW8	156.0	0	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-1538398_2	592010.GCWU000182_001490	78.6	1.31e-16	N/A	N/A
structural_annotation	UHGV-1538398_2	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1538398_3	phrog_15828	84.1	1.3e-24	N/A	unknown function
structural_annotation	UHGV-1538398_3	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-1538398_4	phrog_4014	71.4	1.9e-20	head-tail adaptor	connector
UniRef90	UHGV-1538398_4	UniRef90_A0A133ZZW5	155.0	0	Putative phage head-tail adaptor	N/A
eggNOG-mapper	UHGV-1538398_4	1408438.JADD01000021_gene412	63.5	0.0000000000218	N/A	N/A
NCBIFam	UHGV-1538398_4	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-1538398_4	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1538398_5	phrog_933	57.2	2.4e-16	N/A	unknown function
PHROG	UHGV-1538398_6	phrog_749	99.0	2.5e-29	N/A	unknown function
UniRef90	UHGV-1538398_6	UniRef90_UPI001BE74BBD	106.0	6.62e-28	phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1538398_6	240302.BN982_00187	106.0	1.02e-28	N/A	N/A
structural_annotation	UHGV-1538398_6	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1538398_7	phrog_10	184.3	0	major head protein	head and packaging
UniRef90	UHGV-1538398_7	UniRef90_UPI00080769BA	672.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1538398_7	1274524.BSONL12_06133	258.0	0	capsid protein	N/A
Pfam	UHGV-1538398_7	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1538398_7	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1538398_7	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1538398_7	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1538398_8	K01358	149.0	4.34403e-44	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1538398_8	phrog_94	261.6	0	head maturation protease	head and packaging
UniRef90	UHGV-1538398_8	UniRef90_UPI001EFA2044	409.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-1538398_8	1274524.BSONL12_06128	220.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1538398_8	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1538398_8	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1538398_8	PF00574,MF_00444,NF009203,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1538398_9	phrog_12	279.5	0	portal protein	head and packaging
UniRef90	UHGV-1538398_9	UniRef90_UPI0008076276	780.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1538398_9	1274524.BSONL12_06123	332.0	0	Phage portal protein	N/A
Pfam	UHGV-1538398_9	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1538398_9	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1538398_9	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1538398_9	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1538398_10	phrog_9	439.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-1538398_10	UniRef90_A0A415J7N8	666.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1538398_10	1234664.AMRO01000024_gene1804	671.0	0	Phage Terminase	N/A
Pfam	UHGV-1538398_10	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1538398_10	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1538398_10	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1538398_10	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1538398_11	phrog_83	133.7	2.70002e-41	terminase small subunit	head and packaging
UniRef90	UHGV-1538398_11	UniRef90_UPI0008076EF3	312.0	0	phage terminase small subunit P27 family	N/A
eggNOG-mapper	UHGV-1538398_11	1382315.JPOI01000001_gene285	141.0	2.18e-40	Phage terminase, small subunit	N/A
Pfam	UHGV-1538398_11	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-1538398_11	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
COG	UHGV-1538398_11	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1538398_11	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1538398_12	phrog_144	89.0	5.9e-26	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1538398_12	UniRef90_A0A133QGW6	96.7	1.25e-23	HNH endonuclease domain protein	N/A
eggNOG-mapper	UHGV-1538398_12	1405498.SSIM_11040	95.9	3.58e-24	COG1403 Restriction endonuclease	N/A
Pfam	UHGV-1538398_12	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1538398_12	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1538398_12	PF05766	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1538398_13	PF08281,TIGR01636,COG2739	N/A	N/A	N/A	N/A
UniRef90	UHGV-1538398_15	UniRef90_UPI00189A7F5F	239.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1538398_15	435842.HMPREF0848_00198	148.0	1.06e-35	Pilin isopeptide linkage domain protein	N/A
Pfam	UHGV-1538398_15	PF17961	N/A	N/A	Bacterial Ig domain	Big_8
Pfam	UHGV-1538398_15	PF05737	N/A	N/A	Collagen binding domain	Collagen_bind
COG	UHGV-1538398_15	COG4932	N/A	N/A	Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold	N/A
structural_annotation	UHGV-1538398_15	PF05737,PF17961,NF000535	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1538398_17	1321820.HMPREF1983_00940	111.0	1.04e-28	N/A	N/A
PHROG	UHGV-1538398_18	phrog_98	69.8	4.1e-20	N/A	unknown function
UniRef90	UHGV-1538398_18	UniRef90_UPI0008076800	82.0	1.04e-17	YopX family protein	N/A
eggNOG-mapper	UHGV-1538398_18	562981.HMPREF0428_00992	74.7	0.00000000000000133	YopX protein	N/A
Pfam	UHGV-1538398_18	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1538398_18	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1538398_18	PF09643,TIGR01671	N/A	N/A	N/A	N/A
KOfam	UHGV-1538398_20	K00558	293.7	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1538398_20	phrog_116	310.8	0	DNA methyltransferase	other
UniRef90	UHGV-1538398_20	UniRef90_A0A6H1F1K0	573.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-1538398_20	562981.HMPREF0428_01833	573.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1538398_20	MTase_II_00058	333.2	0	Type II methyltransferase	RM
Pfam	UHGV-1538398_20	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1538398_20	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1538398_20	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1538398_20	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1538398_24	phrog_864	262.2	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1538398_24	UniRef90_UPI000C1B66B9	455.0	0	phage/plasmid primase, P4 family	N/A
eggNOG-mapper	UHGV-1538398_24	202752.JL53_03700	431.0	0	D5 N terminal like	N/A
Pfam	UHGV-1538398_24	PF19263	N/A	N/A	N/A	DUF5906
NCBIFam	UHGV-1538398_24	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-1538398_24	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-1538398_24	PF19263,PF08706,PF03288,PF09250,MF_04000,TIGR01613,COG3378	N/A	N/A	N/A	N/A
KOfam	UHGV-1538398_25	K02319	61.0	6.2e-19	pol; DNA polymerase, archaea type [EC:2.7.7.7]	N/A
PHROG	UHGV-1538398_25	phrog_1252	384.7	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1538398_25	UniRef90_A0A7Z0LH61	427.0	0	DNA_pol_B domain-containing protein	N/A
eggNOG-mapper	UHGV-1538398_25	202752.JL53_03695	419.0	0	DNA polymerase elongation subunit (Family B)	N/A
COG	UHGV-1538398_25	COG0417	N/A	N/A	DNA polymerase B elongation subunit	N/A
structural_annotation	UHGV-1538398_25	PF08490,MF_04100,TIGR00592,COG0417	N/A	N/A	N/A	N/A
PHROG	UHGV-1538398_26	phrog_6479	207.2	0	N/A	unknown function
UniRef90	UHGV-1538398_26	UniRef90_B6D7K3	105.0	2.75e-24	Gp30	N/A
PHROG	UHGV-1538398_27	phrog_674	76.9	2.3e-22	N/A	unknown function
UniRef90	UHGV-1538398_27	UniRef90_A0A7Z0LHL1	60.8	0.000000235	N/A	N/A
eggNOG-mapper	UHGV-1538398_27	938278.CAJO01000051_gene810	62.8	0.00000000927	N/A	N/A
Pfam	UHGV-1538398_27	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1538398_27	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-1538398_28	K06167	43.3	0.0000000000047	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-1538398_28	phrog_392	125.9	4.2e-37	metal-dependent hydrolase	other
UniRef90	UHGV-1538398_28	UniRef90_S4TZZ0	381.0	0	Metallo-beta-lactamase-like protein	N/A
eggNOG-mapper	UHGV-1538398_28	560178.B6D7K1_9CAUD	169.0	0	hydrolase activity	N/A
Pfam	UHGV-1538398_28	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
structural_annotation	UHGV-1538398_28	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-1538398_30	phrog_236	65.4	1.6e-18	nucleotide kinase	other
UniRef90	UHGV-1538398_30	UniRef90_UPI0019595D10	145.0	3.61955e-42	N/A	N/A
eggNOG-mapper	UHGV-1538398_30	1227268.HMPREF1552_01542	59.3	0.000000000569	N/A	N/A
Pfam	UHGV-1538398_30	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-1538398_30	PF11753	N/A	N/A	N/A	N/A
PHROG	UHGV-1538398_31	phrog_1992	106.3	2.4e-31	MazG-like pyrophosphatase	other
UniRef90	UHGV-1538398_31	UniRef90_UPI001AA121B0	63.2	0.00000000276	MazG-like family protein	N/A
eggNOG-mapper	UHGV-1538398_31	562981.HMPREF0428_01854	164.0	0	Mazg nucleotide pyrophosphohydrolase	N/A
COG	UHGV-1538398_31	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-1538398_31	PF08761,MF_01020,NF007113,COG4508	N/A	N/A	N/A	N/A
PHROG	UHGV-1538398_34	phrog_1468	55.2	7.7e-16	transcriptional repressor	transcription regulation
UniRef90	UHGV-1538398_34	UniRef90_A0A116QAI2	49.7	0.00000157	N/A	N/A
PHROG	UHGV-1538398_35	phrog_8	76.8	4.3e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-1538398_35	UniRef90_S4TZZ1	207.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1538398_35	1260356.D920_01208	88.2	4.55e-21	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-1538398_35	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1538398_35	PF12844,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1538398_36	phrog_1516	142.9	1.69978e-42	N/A	unknown function
UniRef90	UHGV-1538398_36	UniRef90_S4U0J6	423.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-1538398_36	1158610.UC3_03192	81.6	3.01e-16	IrrE N-terminal-like domain	N/A
Pfam	UHGV-1538398_36	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1538398_36	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1538398_36	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-1538398_38	K14059	162.4	0	int; integrase	N/A
PHROG	UHGV-1538398_38	phrog_1	168.1	0	integrase	integration and excision
UniRef90	UHGV-1538398_38	UniRef90_S4U063	674.0	0	Site-specific recombinase XerD-like protein	N/A
eggNOG-mapper	UHGV-1538398_38	416870.llmg_0790	124.0	3.51e-29	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1538398_38	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1538398_38	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1538398_38	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A