UHGV-1867879 (vOTU-005430)

Viral Genome: UHGV-1867879

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-1867879
vOTU ID	vOTU-005430
Representative Genome?	Yes
Source	GFD
Original Genome ID	GFD_11.3_NODE_83_length_40790_cov_93.278876
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	DTR
CheckV Completeness	100 (Complete)
Trimmed?	No
CheckV Viral Markers	11
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9737
Viral Hallmark Genes (geNomad)	5
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	21.25
Jumbo Phage?	No

Genome Content
Length (bps)	40,735
GC Content	49.56%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	59
CDS Density	95%
Average CDS Length (bps)	656.95
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1867879_1	phrog_20016	142.3	1.49939e-42	N/A	unknown function
UniRef90	UHGV-1867879_1	UniRef90_A0A2Z4QB67	152.0	4.2039e-45	Carbohydrate binding domain/collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-1867879_1	1226322.HMPREF1545_00077	139.0	7.31996e-41	N/A	N/A
structural_annotation	UHGV-1867879_1	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1867879_2	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-1867879_3	K14059	212.1	0	int; integrase	N/A
PHROG	UHGV-1867879_3	phrog_1	200.6	0	integrase	integration and excision
UniRef90	UHGV-1867879_3	UniRef90_A0A1H8A220	245.0	0	Site-specific recombinase XerD	N/A
eggNOG-mapper	UHGV-1867879_3	1507.HMPREF0262_00307	202.0	0	Phage integrase family	N/A
Pfam	UHGV-1867879_3	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1867879_3	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1867879_3	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
Pfam	UHGV-1867879_4	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1867879_4	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1867879_4	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1867879_7	phrog_8	47.0	0.00000000000059	transcriptional regulator	transcription regulation
UniRef90	UHGV-1867879_7	UniRef90_A0A7X5HYA7	67.4	0.00000000000154	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1867879_7	1160721.RBI_II00559	62.0	0.000000000311	Peptidase S24-like	N/A
COG	UHGV-1867879_7	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1867879_7	PF12844,MF_02017,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1867879_14	phrog_659	48.1	0.00000000000015	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1867879_14	UniRef90_A0A6N9QJT6	213.0	0	N/A	N/A
eggNOG-mapper	UHGV-1867879_14	33035.JPJF01000135_gene5082	126.0	1.39e-33	N/A	N/A
Pfam	UHGV-1867879_14	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-1867879_14	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-1867879_15	phrog_434	40.0	0.00000000005	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1867879_15	UniRef90_B0PAM4	117.0	7.69e-30	YqaJ domain-containing protein	N/A
structural_annotation	UHGV-1867879_15	PF09588,TIGR04328,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-1867879_16	phrog_72	52.3	0.000000000000011	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1867879_16	UniRef90_A0A2Z4Q9W9	74.3	0.000000000000263	NinB	N/A
eggNOG-mapper	UHGV-1867879_16	411490.ANACAC_00804	87.0	8.62e-19	N/A	N/A
structural_annotation	UHGV-1867879_16	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-1867879_17	phrog_7566	73.8	1.9e-21	N/A	unknown function
eggNOG-mapper	UHGV-1867879_17	1304866.K413DRAFT_1198	52.4	0.000000125	N/A	N/A
PHROG	UHGV-1867879_18	phrog_4973	43.4	0.0000000000057	N/A	unknown function
eggNOG-mapper	UHGV-1867879_18	935261.JAGL01000009_gene1175	46.6	0.00000658	Helix-turn-helix domain	N/A
Pfam	UHGV-1867879_18	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1867879_18	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
UniRef90	UHGV-1867879_19	UniRef90_A0A098GES5	105.0	9.86e-28	Putative phage associated protein	N/A
structural_annotation	UHGV-1867879_19	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
KOfam	UHGV-1867879_21	K03111	122.2	7.4e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1867879_21	phrog_44	117.2	1.5e-34	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1867879_21	UniRef90_A0A7C6GL00	120.0	1.79e-32	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1867879_21	1105031.HMPREF1141_2832	113.0	2.45e-30	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1867879_21	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1867879_21	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1867879_21	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1867879_21	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1867879_21	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1867879_22	phrog_8489	217.9	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1867879_22	UniRef90_UPI0013778123	245.0	0	replisome organizer	N/A
eggNOG-mapper	UHGV-1867879_22	1139219.I569_00860	226.0	0	DnaD domain protein	N/A
COG	UHGV-1867879_22	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1867879_22	PF09681,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-1867879_23	K00390	79.3	5.2e-23	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1867879_23	phrog_424	155.1	0	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1867879_23	UniRef90_A0A3D4KZM8	389.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-1867879_23	1280696.ATVY01000096_gene1971	308.0	0	N/A	N/A
Pfam	UHGV-1867879_23	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1867879_23	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1867879_23	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-1867879_31	K01160	52.2	0.000000000000019	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1867879_31	phrog_34	54.0	0.0000000000000038	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1867879_31	UniRef90_A0A7G3DN11	74.7	0.00000000000000899	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1867879_31	1125712.HMPREF1316_1543	85.5	9.72e-20	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1867879_31	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1867879_31	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1867879_31	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1867879_33	PF08962	N/A	N/A	N/A	N/A
COG	UHGV-1867879_34	COG1669	N/A	N/A	Predicted nucleotidyltransferase MJ0435	N/A
structural_annotation	UHGV-1867879_34	PF01381,NF040522,COG1476	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-1867879_35	cluster_47924	102.0	2.48e-32	NA	N/A
KOfam	UHGV-1867879_37	K06909	149.0	4.48416e-44	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1867879_37	phrog_979	147.4	7.00649e-45	terminase large subunit	head and packaging
UniRef90	UHGV-1867879_37	UniRef90_A0A2V2GR60	624.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-1867879_37	1410650.JHWL01000003_gene2834	600.0	0	N/A	N/A
Pfam	UHGV-1867879_37	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1867879_37	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1867879_37	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1867879_38	phrog_156	318.1	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1867879_38	1410650.JHWL01000003_gene2833	564.0	0	N/A	N/A
structural_annotation	UHGV-1867879_38	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1867879_39	K07584	47.9	0.00000000000012	N/A	N/A
PHROG	UHGV-1867879_39	phrog_4478	54.5	3.2e-16	peptidase	other
UniRef90	UHGV-1867879_39	UniRef90_UPI000830E3BF	58.2	0.00000000357	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-1867879_39	748224.HMPREF9436_01398	60.1	0.00000000218	Cysteine protease Prp	N/A
Pfam	UHGV-1867879_39	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-1867879_39	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1867879_39	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-1867879_40	phrog_13908	147.7	7.84727e-44	N/A	unknown function
eggNOG-mapper	UHGV-1867879_40	1410650.JHWL01000003_gene2831	90.5	3.54e-18	N/A	N/A
PHROG	UHGV-1867879_41	phrog_1357	217.5	0	major head protein	head and packaging
UniRef90	UHGV-1867879_41	UniRef90_A0A7G9GB60	299.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1867879_41	1410650.JHWL01000003_gene2830	290.0	0	N/A	N/A
Pfam	UHGV-1867879_41	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1867879_41	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1867879_41	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1867879_43	phrog_12105	88.5	7.1e-26	N/A	unknown function
PHROG	UHGV-1867879_44	phrog_511	183.1	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1867879_44	1410650.JHWL01000003_gene2827	229.0	0	N/A	N/A
structural_annotation	UHGV-1867879_44	PF11134,NF038015,TIGR03721,COG3823	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1867879_46	1203606.HMPREF1526_02741	89.7	2.26e-17	N/A	N/A
PHROG	UHGV-1867879_47	phrog_22978	554.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1867879_47	1123296.JQKE01000020_gene1014	70.1	0.0000000168	extracellular polysaccharide biosynthetic process	N/A
Pfam	UHGV-1867879_47	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
Pfam	UHGV-1867879_47	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
COG	UHGV-1867879_47	COG3206	N/A	N/A	Exopolysaccharide export protein/domain GumC/Wzc1	N/A
KOfam	UHGV-1867879_48	K07296	57.0	2.4e-16	ADIPOQ, ACDC; adiponectin	N/A
PHROG	UHGV-1867879_48	phrog_366	53.0	0.0000000000000069	tail fiber protein	tail
Pfam	UHGV-1867879_48	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-1867879_51	phrog_4105	74.6	1.3e-21	N/A	unknown function
eggNOG-mapper	UHGV-1867879_51	397288.C806_00115	87.0	1.06e-20	N/A	N/A
KOfam	UHGV-1867879_53	K07273	164.0	0	acm; lysozyme	N/A
PHROG	UHGV-1867879_53	phrog_291	141.2	9.99967e-42	endolysin	lysis
UniRef90	UHGV-1867879_53	UniRef90_UPI0008352C2B	257.0	0	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-1867879_53	411470.RUMGNA_00451	194.0	0	COG COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
Pfam	UHGV-1867879_53	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1867879_53	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
UniRef90	UHGV-1867879_55	UniRef90_A0A843IZ65	77.4	2.67e-17	Sigma70_r4 domain-containing protein	N/A
structural_annotation	UHGV-1867879_55	PF04545,MF_00245,NF001074,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1867879_56	phrog_3754	89.6	1.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-1867879_56	476272.RUMHYD_01764	143.0	1.54984e-42	N/A	N/A
PHROG	UHGV-1867879_57	phrog_21718	82.7	4.5e-24	N/A	unknown function
eggNOG-mapper	UHGV-1867879_57	397290.C810_05210	72.4	0.0000000000000278	N/A	N/A
PHROG	UHGV-1867879_58	phrog_22984	68.4	1e-19	N/A	unknown function
PHROG	UHGV-1867879_59	phrog_16490	177.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1867879_59	397290.C810_05212	169.0	0	N/A	N/A