UHGV-1874683 (vOTU-061051)

Viral Genome: UHGV-1874683

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-1874683
vOTU ID	vOTU-061051
Representative Genome?	Yes
Source	DEVoC
Original Genome ID	ViralSequence601
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	99.9 (High-quality)
Trimmed?	No
CheckV Viral Markers	7
CheckV Host Markers	1
Recoded?	No

Viral Content
geNomad score	0.9673
Viral Hallmark Genes (geNomad)	4
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	14.29
Jumbo Phage?	No

Genome Content
Length (bps)	35,358
GC Content	51.47%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	45
CDS Density	89%
Average CDS Length (bps)	702.13
Total tRNA Genes	1
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1874683_1	K24213	74.3	8.2e-22	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-1874683_1	phrog_5073	112.2	4.2e-33	tail fiber protein	tail
Pfam	UHGV-1874683_1	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
UniRef90	UHGV-1874683_3	UniRef90_UPI001EDF593B	207.0	0	N/A	N/A
KOfam	UHGV-1874683_5	K01448	104.5	1.3e-30	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1874683_5	phrog_435	99.4	5.3e-29	endolysin	lysis
UniRef90	UHGV-1874683_5	UniRef90_A0A8F1HW68	270.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1874683_5	1347392.CCEZ01000062_gene685	81.6	8.64e-17	Ami_3	N/A
Pfam	UHGV-1874683_5	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-1874683_5	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
UniRef90	UHGV-1874683_6	UniRef90_A0A8F1KK41	644.0	0	BACON domain-containing protein	N/A
UniRef90	UHGV-1874683_9	UniRef90_A0A2N8IQN5	214.0	0	GYF_2 domain-containing protein	N/A
Pfam	UHGV-1874683_9	PF14237	N/A	N/A	GYF domain 2	GYF_2
structural_annotation	UHGV-1874683_10	PF14594,TIGR01646,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1874683_11	PF18404,MF_01520,TIGR03469,COG1442	N/A	N/A	N/A	N/A
KOfam	UHGV-1874683_12	K14059	133.2	3.4e-39	int; integrase	N/A
PHROG	UHGV-1874683_12	phrog_1	147.5	1.09301e-43	integrase	integration and excision
UniRef90	UHGV-1874683_12	UniRef90_A0A139TV62	723.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-1874683_12	349741.Amuc_1378	149.0	4.29e-38	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1874683_12	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-1874683_12	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1874683_12	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1874683_12	PF00589,PF13102,PF17293,MF_01808,TIGR02225,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1874683_13	phrog_1847	370.4	0	N/A	unknown function
UniRef90	UHGV-1874683_13	UniRef90_UPI000C9B6EA4	764.0	0	GIY-YIG nuclease family protein	N/A
eggNOG-mapper	UHGV-1874683_13	290402.Cbei_0885	255.0	0	T5orf172	N/A
Pfam	UHGV-1874683_13	PF13455	N/A	N/A	Meiotically up-regulated gene 113	MUG113
COG	UHGV-1874683_13	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1874683_13	PF13250,NF041454	N/A	N/A	N/A	N/A
PHROG	UHGV-1874683_20	phrog_252	237.3	0	Bet-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1874683_20	UniRef90_UPI001969A653	372.0	0	phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-1874683_20	470.IX87_07880	201.0	0	RecT family	N/A
Pfam	UHGV-1874683_20	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1874683_20	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
KOfam	UHGV-1874683_21	K01143	56.6	4.5e-16	exo; exodeoxyribonuclease (lambda-induced) [EC:3.1.11.3]	N/A
PHROG	UHGV-1874683_21	phrog_149	102.0	4.9e-30	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1874683_21	UniRef90_A0A2N8HIW0	409.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1874683_21	1215343.B488_04690	62.4	0.00000000418	YqaJ-like viral recombinase domain	N/A
Pfam	UHGV-1874683_21	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
structural_annotation	UHGV-1874683_21	PF09588,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-1874683_22	K01159	79.5	4.3e-23	ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]	N/A
PHROG	UHGV-1874683_22	phrog_159	121.0	6.2e-36	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1874683_22	UniRef90_A0A7G6DSN7	319.0	0	Crossover junction endodeoxyribonuclease RuvC	N/A
eggNOG-mapper	UHGV-1874683_22	367299.JOEE01000001_gene1963	77.0	0.0000000000000028	N/A	N/A
Pfam	UHGV-1874683_22	PF02075	N/A	N/A	Crossover junction endodeoxyribonuclease RuvC	RuvC
structural_annotation	UHGV-1874683_22	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1874683_23	PF17516	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1874683_24	MF_01326_A,NF007260,NF005100	N/A	N/A	N/A	N/A
PHROG	UHGV-1874683_25	phrog_874	193.0	0	N/A	unknown function
UniRef90	UHGV-1874683_25	UniRef90_UPI00137452E8	146.0	6.62e-40	morphogenetic protein	N/A
eggNOG-mapper	UHGV-1874683_25	1005395.CSV86_06146	139.0	1.36e-37	N/A	N/A
structural_annotation	UHGV-1874683_25	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
PHROG	UHGV-1874683_26	phrog_2045	259.3	0	N/A	unknown function
UniRef90	UHGV-1874683_26	UniRef90_UPI0016848729	234.0	0	phage Gp37/Gp68 family protein	N/A
eggNOG-mapper	UHGV-1874683_26	63737.Npun_R1197	215.0	0	Phage Gp37Gp68 family protein	N/A
Pfam	UHGV-1874683_26	PF07505	N/A	N/A	N/A	DUF5131
COG	UHGV-1874683_26	COG4422	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1874683_26	PF07505,TIGR04471,COG4422	N/A	N/A	N/A	N/A
PHROG	UHGV-1874683_28	phrog_2509	168.1	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1874683_28	UniRef90_A0A2N8IQI9	137.0	7.08e-36	Pyocin large subunit	N/A
eggNOG-mapper	UHGV-1874683_28	598467.BrE312_2431	122.0	2.92e-30	sty2063 SWALL Q8Z5Z8 (EMBL AL627272) (262 aa) fasta scores E() 1.5e-07, 24.43 id in 266 aa, and to Escherichia coli O157 H7	N/A
structural_annotation	UHGV-1874683_28	PF17948,PF09681,MF_01061,NF002770,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-1874683_29	K02315	115.2	7e-34	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1874683_29	phrog_50	96.9	2.7e-28	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1874683_29	UniRef90_UPI001C019951	451.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1874683_29	743299.Acife_0420	78.2	0.0000000000000311	PFAM IstB domain protein ATP-binding protein	N/A
Pfam	UHGV-1874683_29	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-1874683_29	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1874683_29	PF01695,MF_01158,NF009043,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1874683_30	phrog_12058	50.5	5.7e-19	N/A	unknown function
Pfam	UHGV-1874683_30	PF13518	N/A	N/A	Helix-turn-helix domain	HTH_28
Pfam	UHGV-1874683_30	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
Pfam	UHGV-1874683_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
PHROG	UHGV-1874683_32	phrog_1482	72.9	3.4e-21	terminase small subunit	head and packaging
UniRef90	UHGV-1874683_32	UniRef90_UPI00156284D0	120.0	3.63e-32	ubiquitin carboxyl-hydrolase	N/A
eggNOG-mapper	UHGV-1874683_32	1562701.BBOF01000006_gene71	63.2	0.000000000124	N/A	N/A
Pfam	UHGV-1874683_32	PF20901	N/A	N/A	Bacteriophage Sf6, terminase small subunit-like	Sf6_terminase
structural_annotation	UHGV-1874683_32	PF20901	N/A	N/A	N/A	N/A
PHROG	UHGV-1874683_33	phrog_2	92.2	8.6e-27	terminase large subunit	head and packaging
UniRef90	UHGV-1874683_33	UniRef90_A0A7G6DSM8	833.0	0	DEAD/DEAH box helicase family protein	N/A
eggNOG-mapper	UHGV-1874683_33	580331.Thit_1395	134.0	4.37e-32	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	N/A
COG	UHGV-1874683_33	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1874683_33	PF04466,PF20441,MF_04145,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-1874683_34	phrog_113	55.0	6.2e-16	portal protein	head and packaging
UniRef90	UHGV-1874683_34	UniRef90_UPI001E2F3EDE	644.0	0	N/A	N/A
eggNOG-mapper	UHGV-1874683_34	278957.ABEA03000019_gene1900	110.0	7.8e-24	Mu-like prophage protein gp29	N/A
Pfam	UHGV-1874683_34	PF06074	N/A	N/A	N/A	DUF935
COG	UHGV-1874683_34	COG4383	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1874683_34	PF06074,MF_04135,TIGR01537,COG4383	N/A	N/A	N/A	N/A
PHROG	UHGV-1874683_35	phrog_328	54.9	7.2e-16	head maturation protease	head and packaging
Pfam	UHGV-1874683_35	PF10123	N/A	N/A	Mu-like prophage I protein	Mu-like_Pro
structural_annotation	UHGV-1874683_35	PF10123,TIGR01543,COG4388	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1874683_37	278957.ABEA03000019_gene1905	70.1	0.0000000000317	N/A	N/A
structural_annotation	UHGV-1874683_40	PF20039	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1874683_43	PF20873	N/A	N/A	N/A	N/A
KOfam	UHGV-1874683_45	K07296	43.2	0.0000000000042	ADIPOQ, ACDC; adiponectin	N/A
PHROG	UHGV-1874683_45	phrog_5073	54.8	0.0000000000000013	tail fiber protein	tail
Pfam	UHGV-1874683_45	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen