UHGV-1935376 (vOTU-088180)

Viral Genome: UHGV-1935376

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-1935376
vOTU ID	vOTU-088180
Representative Genome?	Yes
Source	IMGVR4
Original Genome ID	3300007991\|Ga0105643_100214\|provirus_9935_43678
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	59.74 (Medium-quality)
Trimmed?	Yes
CheckV Viral Markers	13
CheckV Host Markers	5
Recoded?	No

Viral Content
geNomad score	0.9706
Viral Hallmark Genes (geNomad)	5
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	11.99
Jumbo Phage?	No

Genome Content
Length (bps)	31,914
GC Content	47.18%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	56
CDS Density	86%
Average CDS Length (bps)	487.29
Total tRNA Genes	4
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 59.74)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1935376_1	UniRef90_UPI001896BBDB	205.0	0	MerR family transcriptional regulator	N/A
Pfam	UHGV-1935376_1	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
COG	UHGV-1935376_1	COG0789	N/A	N/A	DNA-binding transcriptional regulator, MerR family	N/A
structural_annotation	UHGV-1935376_1	PF12728,MF_01155,NF033787,COG3311	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1935376_6	PF16007,NF038251,COG1695	N/A	N/A	N/A	N/A
PHROG	UHGV-1935376_8	phrog_8684	101.9	5.7e-31	N/A	unknown function
UniRef90	UHGV-1935376_8	UniRef90_UPI0008DAC47C	193.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-1935376_8	762968.HMPREF9441_00543	89.4	1.17e-20	YopX protein	N/A
Pfam	UHGV-1935376_8	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1935376_8	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1935376_8	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-1935376_9	phrog_874	56.8	1.6e-24	N/A	unknown function
eggNOG-mapper	UHGV-1935376_9	563008.HMPREF0665_02420	189.0	0	N/A	N/A
structural_annotation	UHGV-1935376_9	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
PHROG	UHGV-1935376_10	phrog_9298	291.2	0	radical SAM domain protein	other
UniRef90	UHGV-1935376_10	UniRef90_UPI0018749974	536.0	0	radical SAM protein	N/A
eggNOG-mapper	UHGV-1935376_10	445970.ALIPUT_01609	484.0	0	radical SAM domain protein	N/A
COG	UHGV-1935376_10	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-1935376_10	MF_01865,NF010916,COG0621	N/A	N/A	N/A	N/A
KOfam	UHGV-1935376_11	K00390	111.8	5.6e-34	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1935376_11	phrog_424	188.5	0	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1935376_11	UniRef90_A0A5B5VP29	528.0	0	Phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1935376_11	1121098.HMPREF1534_01084	410.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
PADLOC	UHGV-1935376_11	SspD_00001	65.4	4.2e-21	SspD	SSP
Pfam	UHGV-1935376_11	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1935376_11	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1935376_11	PF01507,MF_00063,NF002537,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-1935376_12	K21919	110.6	1.3e-32	KCTD9; BTB/POZ domain-containing protein KCTD9	N/A
PHROG	UHGV-1935376_12	phrog_923	89.2	1.1e-26	N/A	unknown function
UniRef90	UHGV-1935376_12	UniRef90_UPI001898731D	266.0	0	pentapeptide repeat-containing protein	N/A
eggNOG-mapper	UHGV-1935376_12	1226322.HMPREF1545_00011	124.0	1.35e-32	Pentapeptide repeats (8 copies)	N/A
Pfam	UHGV-1935376_12	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
Pfam	UHGV-1935376_12	PF19062	N/A	N/A	N/A	DUF5758
COG	UHGV-1935376_12	COG1357	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1935376_12	PF19062,PF13599,NF011744,COG1357	N/A	N/A	N/A	N/A
PHROG	UHGV-1935376_13	phrog_824	114.2	6.7e-34	N/A	unknown function
UniRef90	UHGV-1935376_13	UniRef90_A0A143XP07	178.0	0	VRR-NUC domain protein	N/A
eggNOG-mapper	UHGV-1935376_13	445970.ALIPUT_00026	174.0	0	N/A	N/A
KOfam	UHGV-1935376_14	K02315	61.1	1.7e-17	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1935376_14	phrog_3277	92.3	1.1e-27	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1935376_14	UniRef90_A0A1M5AR60	185.0	0	DNA replication protein DnaC	N/A
eggNOG-mapper	UHGV-1935376_14	445970.ALIPUT_01605	325.0	0	N/A	N/A
structural_annotation	UHGV-1935376_14	PF01695,MF_01919,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1935376_15	phrog_23776	101.4	6.4e-30	N/A	unknown function
eggNOG-mapper	UHGV-1935376_15	679935.Alfi_0470	99.4	1.33e-21	N/A	N/A
UniRef90	UHGV-1935376_16	UniRef90_A0A840CR27	57.4	0.0000000547	ElaB/YqjD/DUF883 family membrane-anchored ribosome-binding protein	N/A
eggNOG-mapper	UHGV-1935376_16	742725.HMPREF9450_02078	111.0	7.67e-30	N/A	N/A
eggNOG-mapper	UHGV-1935376_17	1121100.JCM6294_521	65.5	0.00000000000117	N/A	N/A
PHROG	UHGV-1935376_19	phrog_155	150.8	7.00649e-45	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1935376_19	UniRef90_UPI001CF7F8A4	187.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-1935376_19	762982.HMPREF9442_00551	178.0	0	Erf family	N/A
Pfam	UHGV-1935376_19	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1935376_19	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1935376_24	phrog_130	84.0	2.1e-24	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1935376_24	UniRef90_A0A143XLQ7	230.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-1935376_24	1347393.HG726021_gene281	123.0	7.95e-33	AntA/AntB antirepressor	N/A
Pfam	UHGV-1935376_24	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-1935376_24	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
Pfam	UHGV-1935376_28	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1935376_28	PF14090,TIGR00373,COG4738	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1935376_30	PF13973,PF17384,COG1862	N/A	N/A	N/A	N/A
KOfam	UHGV-1935376_31	K07684	46.3	0.00000000000035	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	N/A
PHROG	UHGV-1935376_31	phrog_10300	156.4	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-1935376_31	UniRef90_B0MVQ7	370.0	0	Transcriptional regulator, LuxR family	N/A
eggNOG-mapper	UHGV-1935376_31	445970.ALIPUT_01218	370.0	0	Transcriptional regulator, LuxR family	N/A
Pfam	UHGV-1935376_31	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-1935376_31	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
structural_annotation	UHGV-1935376_31	PF00196,MF_00674,NF011940,COG2771	N/A	N/A	N/A	N/A
Pfam	UHGV-1935376_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
KOfam	UHGV-1935376_34	K07504	444.1	0	K07504; predicted type IV restriction endonuclease	N/A
PHROG	UHGV-1935376_34	phrog_4225	427.8	0	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1935376_34	UniRef90_B0MVQ4	721.0	0	Type I restriction enzyme HsdR protein N-terminal domain protein	N/A
eggNOG-mapper	UHGV-1935376_34	445970.ALIPUT_01215	721.0	0	Type I restriction enzyme HsdR protein N-terminal domain protein	N/A
Pfam	UHGV-1935376_34	PF04313	N/A	N/A	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
COG	UHGV-1935376_34	COG4748	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1935376_34	PF13588,TIGR04256,COG4748	N/A	N/A	N/A	N/A
UniRef90	UHGV-1935376_37	UniRef90_A0A373GEQ4	140.0	2.51001e-40	Lipocalin-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1935376_37	445970.ALIPUT_01212	265.0	0	N/A	N/A
structural_annotation	UHGV-1935376_37	PF16585,TIGR03066,COG3187	N/A	N/A	N/A	N/A
PHROG	UHGV-1935376_40	phrog_10066	61.8	1.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-1935376_40	411477.PARMER_02043	54.3	0.000000237	N/A	N/A
structural_annotation	UHGV-1935376_40	PF16090,MF_01549,TIGR00405	N/A	N/A	N/A	N/A
KOfam	UHGV-1935376_41	K14623	91.4	1.3e-26	dinD; DNA-damage-inducible protein D	N/A
PHROG	UHGV-1935376_41	phrog_15286	379.4	0	N/A	unknown function
UniRef90	UHGV-1935376_41	UniRef90_B0MVP8	591.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-1935376_41	445970.ALIPUT_01209	591.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-1935376_41	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-1935376_41	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1935376_41	PF09669,NF008573,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-1935376_42	phrog_4792	116.4	3e-34	anti-repressor	transcription regulation
UniRef90	UHGV-1935376_42	UniRef90_B0MVP7	353.0	0	ORF6N domain-containing protein	N/A
eggNOG-mapper	UHGV-1935376_42	445970.ALIPUT_01207	353.0	0	PFAM ORF6N domain	N/A
Pfam	UHGV-1935376_42	PF10543	N/A	N/A	ORF6N domain	ORF6N
COG	UHGV-1935376_42	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-1935376_42	PF10543,TIGR02681,COG3646	N/A	N/A	N/A	N/A
PHROG	UHGV-1935376_43	phrog_8	45.0	0.0000000000024	transcriptional regulator	transcription regulation
UniRef90	UHGV-1935376_43	UniRef90_UPI00189C57CC	158.0	0	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1935376_43	997884.HMPREF1068_03266	83.2	6.01e-20	N/A	N/A
Pfam	UHGV-1935376_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1935376_43	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1935376_43	PF01381,TIGR02684,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1935376_44	UniRef90_UPI001897821C	218.0	0	N/A	N/A
eggNOG-mapper	UHGV-1935376_44	1203611.KB894559_gene22	96.7	1.03e-24	N/A	N/A
Pfam	UHGV-1935376_44	PF11171	N/A	N/A	N/A	DUF2958
COG	UHGV-1935376_44	COG3616	N/A	N/A	D-serine deaminase, pyridoxal phosphate-dependent	N/A
structural_annotation	UHGV-1935376_44	PF11171	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1935376_46	445970.ALIPUT_01201	96.7	2.75e-26	N/A	N/A
PHROG	UHGV-1935376_47	phrog_1086	61.7	8e-18	N/A	unknown function
UniRef90	UHGV-1935376_47	UniRef90_A0A316PBT4	200.0	0	N/A	N/A
eggNOG-mapper	UHGV-1935376_47	445970.ALIPUT_01200	228.0	0	WYL_2, Sm-like SH3 beta-barrel fold	N/A
Pfam	UHGV-1935376_47	PF10902	N/A	N/A	WYL_2, Sm-like SH3 beta-barrel fold	WYL_2
structural_annotation	UHGV-1935376_47	PF10902	N/A	N/A	N/A	N/A
PHROG	UHGV-1935376_49	phrog_625	55.3	8.4e-16	N/A	unknown function
UniRef90	UHGV-1935376_49	UniRef90_B0MVT1	290.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1935376_49	445970.ALIPUT_01197	290.0	0	N/A	N/A
Pfam	UHGV-1935376_49	PF04266	N/A	N/A	ASCH domain	ASCH
PHROG	UHGV-1935376_50	phrog_424	55.1	8.7e-16	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1935376_50	UniRef90_B0MVT0	472.0	0	Phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1935376_50	445970.ALIPUT_01196	472.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-1935376_50	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1935376_50	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1935376_50	PF01507,MF_00063,TIGR02057,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-1935376_51	phrog_9353	229.0	0	N/A	unknown function
UniRef90	UHGV-1935376_51	UniRef90_B0MVS9	439.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-1935376_51	445970.ALIPUT_01195	439.0	0	N/A	N/A
Pfam	UHGV-1935376_51	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1935376_51	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1935376_51	PF02195,MF_02015,TIGR03764,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-1935376_52	phrog_309	41.0	0.000000000026	terminase small subunit	head and packaging
UniRef90	UHGV-1935376_52	UniRef90_A0A516M3I5	73.9	0.0000000000000329	HTH_8 domain-containing protein	N/A
eggNOG-mapper	UHGV-1935376_52	445970.ALIPUT_01194	274.0	0	N/A	N/A
structural_annotation	UHGV-1935376_52	PF07141	N/A	N/A	N/A	N/A
PHROG	UHGV-1935376_53	phrog_38	296.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1935376_53	UniRef90_A0A174JFB0	691.0	0	Transposase and inactivated derivatives	N/A
eggNOG-mapper	UHGV-1935376_53	445970.ALIPUT_01193	928.0	0	domain protein	N/A
NCBIFam	UHGV-1935376_53	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-1935376_53	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1935376_53	PF17289,PF05876,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-1935376_54	phrog_64	137.4	7.50003e-41	portal protein	head and packaging
UniRef90	UHGV-1935376_54	UniRef90_B0MVS6	936.0	0	Putative phage portal protein, SPP1 family	N/A
eggNOG-mapper	UHGV-1935376_54	445970.ALIPUT_01192	936.0	0	phage portal protein, SPP1	N/A
Pfam	UHGV-1935376_54	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1935376_54	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1935376_55	phrog_35295	354.7	0	N/A	unknown function
UniRef90	UHGV-1935376_55	UniRef90_A0A143XJU3	425.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1935376_55	445970.ALIPUT_01191	747.0	0	N/A	N/A
structural_annotation	UHGV-1935376_55	PF06152	N/A	N/A	N/A	N/A
KOfam	UHGV-1935376_56	K04763	98.8	6.9e-29	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1935376_56	phrog_1	120.3	2.1e-35	integrase	integration and excision
UniRef90	UHGV-1935376_56	UniRef90_B0MVS4	810.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-1935376_56	445970.ALIPUT_01190	810.0	0	Arm DNA-binding domain	N/A
Pfam	UHGV-1935376_56	PF17293	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_5
Pfam	UHGV-1935376_56	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-1935376_56	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1935376_56	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1935376_56	PF17293,PF13102,PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A