UHGV-1939085 (vOTU-124506)

Viral Genome: UHGV-1939085

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-1939085
vOTU ID	vOTU-124506
Representative Genome?	Yes
Source	IMGVR4
Original Genome ID	3300008096\|Ga0114155_1001084\|provirus_4839_30770
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	72.59 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	7
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9697
Viral Hallmark Genes (geNomad)	10
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	29.59
Jumbo Phage?	No

Genome Content
Length (bps)	25,932
GC Content	55.83%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	33
CDS Density	94%
Average CDS Length (bps)	742.55
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 72.59)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1939085_1	K04763	60.0	4e-17	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1939085_1	phrog_1	65.7	8.3e-19	integrase	integration and excision
UniRef90	UHGV-1939085_1	UniRef90_A0A4Y1WR36	854.0	0	Transposase	N/A
eggNOG-mapper	UHGV-1939085_1	997884.HMPREF1068_03093	416.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1939085_1	PF17293	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_5
Pfam	UHGV-1939085_1	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
COG	UHGV-1939085_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1939085_2	PF20647	N/A	N/A	N/A	N/A
UniRef90	UHGV-1939085_3	UniRef90_UPI001CC36B3C	94.7	2.12e-22	N/A	N/A
eggNOG-mapper	UHGV-1939085_3	1122971.BAME01000039_gene3564	57.4	0.0000000199	N/A	N/A
structural_annotation	UHGV-1939085_3	PF11195	N/A	N/A	N/A	N/A
KOfam	UHGV-1939085_4	K01448	93.0	3.2e-27	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1939085_4	phrog_435	127.2	1.6e-37	endolysin	lysis
UniRef90	UHGV-1939085_4	UniRef90_A0A174BQ54	256.0	0	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1939085_4	679935.Alfi_2718	256.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1939085_4	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-1939085_4	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1939085_4	PF01520,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-1939085_6	phrog_38864	355.9	0	N/A	unknown function
structural_annotation	UHGV-1939085_6	PF13185,MF_04104,NF041673,COG2203	N/A	N/A	N/A	N/A
COG	UHGV-1939085_8	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-1939085_10	PF11940	N/A	N/A	N/A	N/A
PHROG	UHGV-1939085_11	phrog_38413	117.7	9.7e-35	N/A	unknown function
UniRef90	UHGV-1939085_11	UniRef90_UPI001F3AD9A1	133.0	1.45e-33	nucleotidyltransferase	N/A
eggNOG-mapper	UHGV-1939085_11	1347393.HG726020_gene1159	195.0	0	N/A	N/A
structural_annotation	UHGV-1939085_11	PF03434,COG3948	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1939085_12	PF01476,NF010723,COG5004	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1939085_13	929704.Myrod_2649	68.9	0.000000000000107	N/A	N/A
structural_annotation	UHGV-1939085_13	PF04965	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1939085_14	1347393.HG726020_gene1165	52.4	0.00000633	N/A	N/A
structural_annotation	UHGV-1939085_14	PF01455,MF_00216,TIGR00008,COG0361	N/A	N/A	N/A	N/A
KOfam	UHGV-1939085_15	K06905	58.7	7.3e-17	N/A	N/A
PHROG	UHGV-1939085_15	phrog_4930	210.8	0	N/A	unknown function
UniRef90	UHGV-1939085_15	UniRef90_A0A2E0JPM9	167.0	1.4013e-45	Late control protein	N/A
eggNOG-mapper	UHGV-1939085_15	313606.M23134_07833	155.0	7.41007e-42	Late control gene D protein	N/A
COG	UHGV-1939085_15	COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1939085_15	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1939085_16	phrog_5233	49.3	0.000000000000068	N/A	unknown function
UniRef90	UHGV-1939085_16	UniRef90_A0A349DKT9	89.4	1.28e-18	N/A	N/A
eggNOG-mapper	UHGV-1939085_16	313606.M23134_07373	84.3	2.39e-17	N/A	N/A
Pfam	UHGV-1939085_16	PF19512	N/A	N/A	N/A	DUF6046
PHROG	UHGV-1939085_17	phrog_28	69.8	4.8e-21	tail length tape measure protein	tail
UniRef90	UHGV-1939085_17	UniRef90_A0A3D4U0R2	277.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1939085_17	1349785.BAUG01000013_gene1064	180.0	0	tape measure	N/A
Pfam	UHGV-1939085_17	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1939085_17	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1939085_17	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1939085_17	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1939085_18	phrog_19076	83.2	2e-24	N/A	unknown function
eggNOG-mapper	UHGV-1939085_18	880526.KE386488_gene331	70.1	0.0000000000000366	N/A	N/A
structural_annotation	UHGV-1939085_18	PF20941	N/A	N/A	N/A	N/A
PHROG	UHGV-1939085_19	phrog_4579	60.8	2.2e-17	tail protein	tail
eggNOG-mapper	UHGV-1939085_19	1349785.BAUG01000013_gene1067	112.0	4.19e-30	N/A	N/A
PHROG	UHGV-1939085_20	phrog_907	127.3	8.8e-40	tail sheath	tail
UniRef90	UHGV-1939085_20	UniRef90_UPI00041B7BA9	179.0	0	N/A	N/A
eggNOG-mapper	UHGV-1939085_20	1349785.BAUG01000013_gene1068	179.0	0	N/A	N/A
Pfam	UHGV-1939085_20	PF10758	N/A	N/A	N/A	DUF2586
structural_annotation	UHGV-1939085_20	PF10758,COG3497	N/A	N/A	N/A	N/A
PHROG	UHGV-1939085_21	phrog_267	101.9	5.5e-30	major head protein	head and packaging
UniRef90	UHGV-1939085_21	UniRef90_UPI001D099DB2	284.0	0	BACON domain-containing protein	N/A
eggNOG-mapper	UHGV-1939085_21	411901.BACCAC_00731	281.0	0	N/A	N/A
structural_annotation	UHGV-1939085_21	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1939085_22	K01358	98.0	1.2e-28	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1939085_22	phrog_94	118.8	6e-35	head maturation protease	head and packaging
UniRef90	UHGV-1939085_22	UniRef90_UPI0015624047	142.0	1.05e-35	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-1939085_22	869213.JCM21142_104331	121.0	1.11e-28	Clp protease	N/A
Pfam	UHGV-1939085_22	PF00574	N/A	N/A	Clp protease	CLP_protease
Pfam	UHGV-1939085_22	PF10123	N/A	N/A	Mu-like prophage I protein	Mu-like_Pro
COG	UHGV-1939085_22	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1939085_22	PF00574,PF10123,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1939085_23	phrog_4151	79.1	2.7e-23	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1939085_23	UniRef90_A0A7X6VFS5	91.3	1.73e-20	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1939085_23	679935.Alfi_0783	89.0	2.13e-20	N/A	N/A
Pfam	UHGV-1939085_23	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
COG	UHGV-1939085_23	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1939085_23	PF06056	N/A	N/A	N/A	N/A
PHROG	UHGV-1939085_24	phrog_38	173.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-1939085_24	UniRef90_A0A4R2EHR8	499.0	0	Phage terminase large subunit-like protein	N/A
eggNOG-mapper	UHGV-1939085_24	869213.JCM21142_104329	480.0	0	TIGRFAM Phage	N/A
Pfam	UHGV-1939085_24	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
COG	UHGV-1939085_24	COG5362	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1939085_24	PF17289,PF03237,MF_04147,NF033889,COG5323	N/A	N/A	N/A	N/A
PHROG	UHGV-1939085_25	phrog_22181	40.4	0.000000000044	N/A	unknown function
PHROG	UHGV-1939085_26	phrog_195	57.2	2.9e-16	head-tail adaptor	connector
UniRef90	UHGV-1939085_26	UniRef90_A0A412BSD3	76.3	0.00000000000000683	N/A	N/A
Pfam	UHGV-1939085_26	PF07030	N/A	N/A	Bacteriophage Mu, Gp36	Phage_Mu_Gp36
COG	UHGV-1939085_26	COG4387	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1939085_26	PF07030,COG4387	N/A	N/A	N/A	N/A
PHROG	UHGV-1939085_27	phrog_35074	93.3	1.3e-27	N/A	unknown function
UniRef90	UHGV-1939085_27	UniRef90_A0A7X7R0E0	356.0	0	N/A	N/A
eggNOG-mapper	UHGV-1939085_27	1392486.JIAF01000004_gene1686	340.0	0	N/A	N/A
Pfam	UHGV-1939085_27	PF06074	N/A	N/A	N/A	DUF935
COG	UHGV-1939085_27	COG4383	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1939085_27	PF06074,MF_04135,TIGR01537,COG4383	N/A	N/A	N/A	N/A
PHROG	UHGV-1939085_28	phrog_19194	165.0	0	N/A	unknown function
UniRef90	UHGV-1939085_28	UniRef90_UPI0013D49B21	247.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1939085_28	1347393.HG726020_gene1179	238.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-1939085_28	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
Pfam	UHGV-1939085_28	PF18451	N/A	N/A	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
NCBIFam	UHGV-1939085_28	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1939085_28	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1939085_28	PF04233,PF18451,TIGR01641	N/A	N/A	N/A	N/A
KOfam	UHGV-1939085_29	K07319	158.4	0	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-1939085_29	phrog_67	129.0	3e-38	DNA methyltransferase	other
UniRef90	UHGV-1939085_29	UniRef90_A0A1V5VSP7	207.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1939085_29	444158.MmarC6_0019	163.0	9.80909e-45	PFAM DNA methylase N-4 N-6 domain protein	N/A
PADLOC	UHGV-1939085_29	MTase_II_00051	128.9	5.9e-38	Type II methyltransferase	RM
Pfam	UHGV-1939085_29	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1939085_29	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1939085_29	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1939085_30	phrog_26	57.1	3.7e-16	tail completion or Neck1 protein	connector
UniRef90	UHGV-1939085_30	UniRef90_UPI001D108E17	85.5	2.64e-17	phage virion morphogenesis protein	N/A
eggNOG-mapper	UHGV-1939085_30	997353.HMPREF9144_1152	62.4	0.000000000981	Phage virion morphogenesis family	N/A
Pfam	UHGV-1939085_30	PF05069	N/A	N/A	Phage virion morphogenesis family	Phage_tail_S
COG	UHGV-1939085_30	COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1939085_30	PF05069,TIGR01635,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1939085_31	phrog_6911	80.1	2.2e-23	N/A	unknown function
eggNOG-mapper	UHGV-1939085_31	679935.Alfi_0791	65.9	0.0000000000521	N/A	N/A
structural_annotation	UHGV-1939085_31	PF08873,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-1939085_32	phrog_874	56.5	1.5e-25	N/A	unknown function
eggNOG-mapper	UHGV-1939085_32	563008.HMPREF0665_02420	197.0	0	N/A	N/A
structural_annotation	UHGV-1939085_32	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A