UHGV-1973013 (vOTU-104044)

Viral Genome: UHGV-1973013

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-1973013
vOTU ID	vOTU-104044
Representative Genome?	Yes
Source	IMGVR4
Original Genome ID	3300014944\|Ga0134440_100050\|provirus_2_31055
Associated Biosample	SAMN03922520
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	87.21 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	17
CheckV Host Markers	1
Recoded?	No

Viral Content
geNomad score	0.9723
Viral Hallmark Genes (geNomad)	8
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	48.79
Jumbo Phage?	No

Genome Content
Length (bps)	31,054
GC Content	58.57%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	38
CDS Density	94%
Average CDS Length (bps)	770.37
Total tRNA Genes	2
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 87.21)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1973013_3	phrog_5717	79.3	3.1e-23	tail protein	tail
UniRef90	UHGV-1973013_3	UniRef90_A0A7X0SPM4	59.7	0.0000000258	Phage tail protein	N/A
eggNOG-mapper	UHGV-1973013_3	1217705.F900_01087	74.3	0.0000000000000321	N/A	N/A
structural_annotation	UHGV-1973013_3	COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-1973013_5	phrog_24267	71.6	8.4e-21	N/A	unknown function
UniRef90	UHGV-1973013_5	UniRef90_A0A2H4JF11	84.7	6.04e-17	Putative structural protein	N/A
eggNOG-mapper	UHGV-1973013_5	500635.MITSMUL_03163	114.0	1.78e-27	Membrane	N/A
COG	UHGV-1973013_5	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-1973013_5	COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-1973013_6	phrog_18593	66.2	6e-21	N/A	unknown function
UniRef90	UHGV-1973013_6	UniRef90_A0A2V2G1S1	308.0	0	Chitinase	N/A
eggNOG-mapper	UHGV-1973013_6	411467.BACCAP_00281	95.1	2.54e-22	N/A	N/A
Pfam	UHGV-1973013_6	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
COG	UHGV-1973013_7	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-1973013_8	phrog_4311	541.9	0	minor head protein	head and packaging
UniRef90	UHGV-1973013_8	UniRef90_A0A2V2FYD1	1322.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1973013_8	1536769.P40081_01145	401.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1973013_8	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1973013_8	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1973013_8	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1973013_8	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1973013_10	phrog_33	58.7	1.5e-16	distal tail protein Dit	tail
UniRef90	UHGV-1973013_10	UniRef90_UPI0015E680B8	62.8	0.0000000666	phage tail family protein	N/A
NCBIFam	UHGV-1973013_10	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
structural_annotation	UHGV-1973013_10	PF20753,PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1973013_11	phrog_1272	299.8	0	tail length tape measure protein	tail
UniRef90	UHGV-1973013_11	UniRef90_A0A2V2G1E2	1582.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1973013_11	665950.HMPREF1025_02680	339.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-1973013_11	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-1973013_11	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-1973013_13	phrog_88	133.2	1.6e-39	major tail protein	tail
UniRef90	UHGV-1973013_13	UniRef90_A0A6N8BAA1	115.0	5.49e-28	Big_5 domain-containing protein	N/A
eggNOG-mapper	UHGV-1973013_13	1238184.CM001792_gene2511	111.0	3.31e-28	Phage tail tube protein	N/A
Pfam	UHGV-1973013_13	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-1973013_13	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-1973013_13	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1973013_13	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1973013_14	phrog_78	44.1	0.0000000000037	tail terminator	connector
structural_annotation	UHGV-1973013_14	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1973013_15	phrog_5	67.7	2.5e-19	tail completion or Neck1 protein	connector
Pfam	UHGV-1973013_15	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1973013_15	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1973013_15	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1973013_16	phrog_25	76.3	3.2e-22	head closure Hc1	connector
UniRef90	UHGV-1973013_16	UniRef90_A0A0L8EXW2	84.3	5.9e-19	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-1973013_16	1408424.JHYI01000032_gene3819	81.3	1.79e-18	Phage head-tail joining protein	N/A
Pfam	UHGV-1973013_16	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-1973013_16	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-1973013_16	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1973013_16	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1973013_17	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1973013_19	phrog_10	174.9	0	major head protein	head and packaging
UniRef90	UHGV-1973013_19	UniRef90_A0A2V2FYC2	812.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1973013_19	1007103.AFHW01000142_gene1299	218.0	0	Phage capsid family	N/A
Pfam	UHGV-1973013_19	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1973013_19	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1973013_19	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1973013_19	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1973013_20	K01358	142.3	4.49957e-42	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1973013_20	phrog_94	245.4	0	head maturation protease	head and packaging
UniRef90	UHGV-1973013_20	UniRef90_A0A2V2G0Z1	496.0	0	Peptidase	N/A
eggNOG-mapper	UHGV-1973013_20	1235799.C818_00440	184.0	0	Serine dehydrogenase proteinase	N/A
Pfam	UHGV-1973013_20	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1973013_20	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1973013_20	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1973013_21	phrog_12	266.0	0	portal protein	head and packaging
UniRef90	UHGV-1973013_21	UniRef90_A0A2V2G1D0	818.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1973013_21	235909.GK0529	278.0	0	Phage portal protein	N/A
Pfam	UHGV-1973013_21	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1973013_21	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1973013_21	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1973013_21	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1973013_22	phrog_9	408.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1973013_22	UniRef90_A0A2V2G2T2	1175.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1973013_22	1295642.H839_15973	587.0	0	Phage Terminase	N/A
Pfam	UHGV-1973013_22	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1973013_22	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1973013_22	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1973013_22	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1973013_23	1329516.JPST01000016_gene392	67.8	0.000000000000632	Phage terminase, small subunit	N/A
Pfam	UHGV-1973013_23	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
KOfam	UHGV-1973013_24	K07451	48.3	0.00000000000018	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-1973013_24	phrog_119	78.8	7.2e-23	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1973013_24	UniRef90_A0A2V2FX62	159.0	0	Endonuclease	N/A
eggNOG-mapper	UHGV-1973013_24	1396.DJ87_2698	83.6	2.2e-19	HNH endonuclease	N/A
Pfam	UHGV-1973013_24	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1973013_24	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1973013_25	phrog_36	41.0	0.000000000034	transcriptional regulator	transcription regulation
UniRef90	UHGV-1973013_25	UniRef90_A0A1Q6JK08	189.0	0	Sigma70_r4 domain-containing protein	N/A
KOfam	UHGV-1973013_26	K03111	130.7	1.8e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1973013_26	phrog_44	116.4	2.7e-34	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1973013_26	UniRef90_A0A2V2FX13	243.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1973013_26	500635.MITSMUL_04510	102.0	5.58e-26	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1973013_26	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1973013_26	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1973013_26	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1973013_26	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1973013_26	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1973013_28	phrog_15609	101.3	5.5e-30	N/A	unknown function
eggNOG-mapper	UHGV-1973013_28	1235835.C814_03157	64.3	0.00000000985	N/A	N/A
Pfam	UHGV-1973013_28	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-1973013_28	COG2433	N/A	N/A	Possible nuclease of RNase H fold, RuvC/YqgF family	N/A
structural_annotation	UHGV-1973013_28	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-1973013_30	phrog_239	82.5	1.9e-24	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1973013_30	UniRef90_A0A5D3I7V8	518.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-1973013_30	760568.Desku_3516	484.0	0	DNA primase	N/A
COG	UHGV-1973013_30	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-1973013_30	PF06048,PF01807,PF18662,PF19898,MF_00974,MF_00016,TIGR01391,NF011296,COG5519,COG0358	N/A	N/A	N/A	N/A
UniRef90	UHGV-1973013_31	UniRef90_A0A1Q6JK14	127.0	1.03e-35	HTH_17 domain-containing protein	N/A
Pfam	UHGV-1973013_31	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-1973013_31	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
PHROG	UHGV-1973013_32	phrog_6499	88.0	6.5e-26	transcriptional regulator	transcription regulation
UniRef90	UHGV-1973013_32	UniRef90_A0A373CLV7	54.7	0.00000219	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1973013_32	246194.CHY_1694	53.9	0.000000518	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-1973013_32	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-1973013_32	PF06892,NF040522,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1973013_34	phrog_4068	84.3	1.4e-24	N/A	unknown function
structural_annotation	UHGV-1973013_34	PF06657	N/A	N/A	N/A	N/A
KOfam	UHGV-1973013_35	K22299	45.3	0.0000000000017	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1973013_35	phrog_8	63.0	7e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1973013_35	UniRef90_A0A2V2G1L8	329.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1973013_35	760568.Desku_2060	58.2	0.0000000166	PFAM Helix-turn-helix	N/A
Pfam	UHGV-1973013_35	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1973013_35	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1973013_35	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1973013_37	K14059	279.5	0	int; integrase	N/A
PHROG	UHGV-1973013_37	phrog_1	222.2	0	integrase	integration and excision
UniRef90	UHGV-1973013_37	UniRef90_A0A1X2FY82	245.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1973013_37	760568.Desku_1398	228.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1973013_37	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1973013_37	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1973013_37	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1973013_37	PF00589,PF13102,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A