UHGV-2031076 (vOTU-016037)

Viral Genome: UHGV-2031076

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-2031076
vOTU ID	vOTU-016037
Representative Genome?	Yes
Source	IMGVR4
Original Genome ID	3300029187\|Ga0168669_100166\|provirus_12958_72545
Associated Biosample	SAMEA2737650
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	83.27 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	14
CheckV Host Markers	1
Recoded?	No

Viral Content
geNomad score	0.9745
Viral Hallmark Genes (geNomad)	4
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	34.77
Jumbo Phage?	No

Genome Content
Length (bps)	59,588
GC Content	40.30%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	86
CDS Density	91%
Average CDS Length (bps)	632.44
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 83.27)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2031076_1	K04763	72.1	8.6e-21	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-2031076_1	phrog_1	110.4	2.2e-32	integrase	integration and excision
UniRef90	UHGV-2031076_1	UniRef90_B0NM83	790.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-2031076_1	449673.BACSTE_00585	790.0	0	Phage integrase SAM-like domain	N/A
Pfam	UHGV-2031076_1	PF17293	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_5
Pfam	UHGV-2031076_1	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
COG	UHGV-2031076_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2031076_1	PF17293,PF13102,PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-2031076_3	K14060	113.1	2.5e-33	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-2031076_3	phrog_125	107.5	1.3e-31	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2031076_3	UniRef90_A0A415SF92	421.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-2031076_3	1127692.HMPREF9075_00071	89.7	5.66e-19	N/A	N/A
Pfam	UHGV-2031076_3	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-2031076_3	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-2031076_3	PF00239,NF009949,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2031076_5	471870.BACINT_00445	79.7	6.52e-19	N/A	N/A
UniRef90	UHGV-2031076_6	UniRef90_D1K5B5	679.0	0	LPD29 domain-containing protein	N/A
eggNOG-mapper	UHGV-2031076_6	1519439.JPJG01000053_gene1369	88.2	1.51e-16	DnaJ molecular chaperone homology domain	N/A
Pfam	UHGV-2031076_6	PF18847	N/A	N/A	Large polyvalent protein associated domain 29	LPD29
COG	UHGV-2031076_6	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
structural_annotation	UHGV-2031076_6	PF18847	N/A	N/A	N/A	N/A
PHROG	UHGV-2031076_8	phrog_119	54.7	0.0000000000000016	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2031076_8	UniRef90_UPI000E74D478	215.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-2031076_8	484018.BACPLE_01044	124.0	4.16e-36	HNH nucleases	N/A
COG	UHGV-2031076_8	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-2031076_9	484018.BACPLE_01045	195.0	0	N/A	N/A
UniRef90	UHGV-2031076_10	UniRef90_UPI000E75AC29	612.0	0	N/A	N/A
eggNOG-mapper	UHGV-2031076_10	411477.PARMER_01970	419.0	0	N/A	N/A
Pfam	UHGV-2031076_10	PF14362	N/A	N/A	N/A	DUF4407
COG	UHGV-2031076_10	COG1256	N/A	N/A	Flagellar hook-associated protein FlgK	N/A
eggNOG-mapper	UHGV-2031076_11	272134.KB731324_gene3499	54.3	0.00000023	N/A	N/A
eggNOG-mapper	UHGV-2031076_12	457424.BFAG_04897	52.8	0.00000641	N/A	N/A
KOfam	UHGV-2031076_14	K07741	49.8	0.00000000000011	antB; anti-repressor protein	N/A
PHROG	UHGV-2031076_14	phrog_130	164.8	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-2031076_14	UniRef90_A0A415SHK7	499.0	0	Phage antirepressor	N/A
eggNOG-mapper	UHGV-2031076_14	1122971.BAME01000225_gene6795	234.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-2031076_14	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-2031076_14	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-2031076_14	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-2031076_14	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2031076_16	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-2031076_19	phrog_14682	60.0	1.3e-17	N/A	unknown function
UniRef90	UHGV-2031076_19	UniRef90_A8AT53	60.5	0.00000000134	Gp29	N/A
eggNOG-mapper	UHGV-2031076_19	411901.BACCAC_01175	191.0	0	N/A	N/A
structural_annotation	UHGV-2031076_23	NF004688	N/A	N/A	N/A	N/A
PHROG	UHGV-2031076_28	phrog_872	151.7	2.8026e-45	N/A	unknown function
UniRef90	UHGV-2031076_28	UniRef90_A0A3E4KB68	473.0	0	N/A	N/A
eggNOG-mapper	UHGV-2031076_28	762982.HMPREF9442_01182	305.0	0	N/A	N/A
Pfam	UHGV-2031076_28	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-2031076_28	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-2031076_28	PF11195	N/A	N/A	N/A	N/A
KOfam	UHGV-2031076_29	K04485	41.2	0.000000000014	radA, sms; DNA repair protein RadA/Sms	N/A
PHROG	UHGV-2031076_29	phrog_239	72.4	2e-21	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2031076_29	UniRef90_UPI00125CCE12	665.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-2031076_29	1121887.AUDK01000018_gene3207	169.0	0	AAA domain	N/A
Pfam	UHGV-2031076_29	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-2031076_29	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
structural_annotation	UHGV-2031076_29	PF06745,MF_01498,TIGR00416,COG0467	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2031076_30	PF02566	N/A	N/A	N/A	N/A
PHROG	UHGV-2031076_31	phrog_1365	52.3	0.0000000000000083	N/A	unknown function
PHROG	UHGV-2031076_32	phrog_1281	150.2	7.00649e-45	N/A	unknown function
UniRef90	UHGV-2031076_32	UniRef90_A0A174IJF6	277.0	0	Phage-associated protein	N/A
eggNOG-mapper	UHGV-2031076_32	1095752.HMPREF9969_2152	155.0	0	N/A	N/A
Pfam	UHGV-2031076_32	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-2031076_32	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2031076_32	PF13274,COG3600	N/A	N/A	N/A	N/A
PHROG	UHGV-2031076_33	phrog_8366	62.1	9.7e-18	N/A	unknown function
eggNOG-mapper	UHGV-2031076_33	991.IW20_00170	109.0	5.98e-29	N/A	N/A
KOfam	UHGV-2031076_34	K20283	62.1	1.8e-29	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-2031076_34	phrog_9959	213.3	0	tail length tape measure protein	tail
UniRef90	UHGV-2031076_34	UniRef90_A0A415SRF7	1843.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-2031076_34	742727.HMPREF9447_04839	207.0	0	tape measure	N/A
Pfam	UHGV-2031076_34	PF20155	N/A	N/A	Tape measure protein	TMP_3
COG	UHGV-2031076_34	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2031076_34	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2031076_35	PF06894,TIGR01674	N/A	N/A	N/A	N/A
PHROG	UHGV-2031076_36	phrog_6767	47.8	0.00000000000019	N/A	unknown function
structural_annotation	UHGV-2031076_36	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2031076_37	PF05561,NF040576,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-2031076_38	phrog_5377	44.2	0.0000000000029	N/A	unknown function
structural_annotation	UHGV-2031076_39	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-2031076_41	UniRef90_A0A8B2AWS5	423.0	0	Major capsid protein	N/A
structural_annotation	UHGV-2031076_41	PF03864,MF_04133,TIGR04387,COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2031076_42	PF21430	N/A	N/A	N/A	N/A
PHROG	UHGV-2031076_44	phrog_979	112.9	2.4e-33	terminase large subunit	head and packaging
UniRef90	UHGV-2031076_44	UniRef90_A0A415SRG6	848.0	0	DOD-type homing endonuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-2031076_44	1121286.AUMT01000013_gene2660	160.0	2.18e-40	Terminase-like family	N/A
Pfam	UHGV-2031076_44	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-2031076_44	COG5362	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2031076_44	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2031076_46	phrog_64	87.5	1e-25	portal protein	head and packaging
UniRef90	UHGV-2031076_46	UniRef90_A0A5P0X070	509.0	0	Phage portal protein	N/A
Pfam	UHGV-2031076_46	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-2031076_46	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-2031076_47	phrog_38044	228.6	0	N/A	unknown function
UniRef90	UHGV-2031076_47	UniRef90_UPI001BA54672	199.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-2031076_47	657309.BXY_05160	262.0	0	N/A	N/A
structural_annotation	UHGV-2031076_47	PF14594,PF04862,PF18141,TIGR01665,NF038128,COG4926	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2031076_48	742727.HMPREF9447_04856	86.7	4.6e-21	N/A	N/A
structural_annotation	UHGV-2031076_49	PF09327	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2031076_51	272559.BF9343_2359	123.0	3.86e-34	N/A	N/A
PHROG	UHGV-2031076_52	phrog_19698	194.6	0	N/A	unknown function
eggNOG-mapper	UHGV-2031076_52	1235788.C802_00116	176.0	0	N/A	N/A
KOfam	UHGV-2031076_54	K01448	120.8	1.4e-35	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-2031076_54	phrog_435	175.1	0	endolysin	lysis
UniRef90	UHGV-2031076_54	UniRef90_UPI0018997145	382.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-2031076_54	657309.BXY_08040	328.0	0	COG NOG32858 non supervised orthologous group	N/A
Pfam	UHGV-2031076_54	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-2031076_54	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-2031076_54	PF01520,TIGR02883,COG0860	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2031076_55	PF14607,MF_01372,NF038393	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2031076_56	PF13385,PF17994	N/A	N/A	N/A	N/A
PHROG	UHGV-2031076_58	phrog_26448	53.5	6.7e-16	N/A	unknown function
eggNOG-mapper	UHGV-2031076_58	762984.HMPREF9445_00190	274.0	0	N/A	N/A
Pfam	UHGV-2031076_58	PF20647	N/A	N/A	N/A	DUF6808
structural_annotation	UHGV-2031076_58	PF20647	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2031076_59	PF08299,NF004688	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2031076_62	PF10628	N/A	N/A	N/A	N/A
UniRef90	UHGV-2031076_65	UniRef90_UPI0018A04156	153.0	1.29004e-41	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-2031076_65	411901.BACCAC_01209	221.0	0	BRO family, N-terminal domain	N/A
COG	UHGV-2031076_65	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-2031076_65	PF08346,COG3561	N/A	N/A	N/A	N/A
PHROG	UHGV-2031076_66	phrog_59	118.8	2.8e-35	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2031076_66	UniRef90_UPI001F0A0DE7	92.8	1.02e-19	NUMOD4 motif-containing HNH endonuclease	N/A
eggNOG-mapper	UHGV-2031076_66	1121286.AUMT01000013_gene2588	91.3	3e-20	HNH endonuclease	N/A
PADLOC	UHGV-2031076_66	HEase_00016	51.3	0.000000000000032	homing endonuclease	RM
Pfam	UHGV-2031076_66	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-2031076_66	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-2031076_67	PF11169	N/A	N/A	N/A	N/A
UniRef90	UHGV-2031076_68	UniRef90_A0A415IS58	87.0	2.36e-19	LacI family DNA-binding transcriptional regulator	N/A
structural_annotation	UHGV-2031076_68	PF13384,TIGR04381	N/A	N/A	N/A	N/A
PHROG	UHGV-2031076_69	phrog_1818	99.9	1.1e-29	N/A	unknown function
UniRef90	UHGV-2031076_69	UniRef90_UPI001230C7A4	142.0	3.75e-40	HAD domain-containing protein	N/A
eggNOG-mapper	UHGV-2031076_69	1458859.A0A088C4I8_9CAUD	83.6	5.3e-18	N/A	N/A
Pfam	UHGV-2031076_69	PF18143	N/A	N/A	HAD domain in Swiss Army Knife RNA repair proteins	HAD_SAK_2
structural_annotation	UHGV-2031076_69	PF18143,NF003937,COG0241	N/A	N/A	N/A	N/A
PHROG	UHGV-2031076_70	phrog_355	68.1	1.3e-19	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2031076_70	UniRef90_UPI0011DCE920	210.0	0	N/A	N/A
eggNOG-mapper	UHGV-2031076_70	762982.HMPREF9442_01214	130.0	8.82e-38	N/A	N/A
Pfam	UHGV-2031076_70	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-2031076_70	PF14359,MF_03036,TIGR03646,COG3613	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2031076_71	PF08928	N/A	N/A	N/A	N/A
PHROG	UHGV-2031076_72	phrog_8684	62.4	5.2e-19	N/A	unknown function
UniRef90	UHGV-2031076_72	UniRef90_UPI00189AAD7E	276.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-2031076_72	762982.HMPREF9442_00542	60.1	0.000000000844	YopX protein	N/A
Pfam	UHGV-2031076_72	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-2031076_72	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-2031076_73	phrog_874	114.7	8.5e-34	N/A	unknown function
eggNOG-mapper	UHGV-2031076_73	762968.HMPREF9441_00541	161.0	0	N/A	N/A
structural_annotation	UHGV-2031076_73	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2031076_74	657309.BXY_08540	71.6	0.00000000000000213	N/A	N/A
PHROG	UHGV-2031076_75	phrog_12005	70.0	3.7e-20	N/A	unknown function
UniRef90	UHGV-2031076_78	UniRef90_A0A7K0JNA1	131.0	1.74e-36	N/A	N/A
structural_annotation	UHGV-2031076_79	PF20020	N/A	N/A	N/A	N/A
KOfam	UHGV-2031076_81	K07319	94.6	9.4e-28	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-2031076_81	phrog_16	221.9	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2031076_81	UniRef90_I9RH12	1630.0	0	Helicase ATP-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-2031076_81	357276.EL88_11455	1626.0	0	DNA methylase	N/A
PADLOC	UHGV-2031076_81	MTase_II_00157	41.7	0.00000000000002	Type II methyltransferase	RM
Pfam	UHGV-2031076_81	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-2031076_81	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
Pfam	UHGV-2031076_81	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-2031076_81	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-2031076_81	PF01555,PF16203,PF04851,MF_01821,MF_00472,NF041790,NF008572,COG0553,COG0863	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2031076_82	1347393.HG726022_gene3594	160.0	0	N/A	N/A
PHROG	UHGV-2031076_83	phrog_19578	63.8	1.8e-18	N/A	unknown function
eggNOG-mapper	UHGV-2031076_83	1268240.ATFI01000007_gene437	57.4	0.000000000199	N/A	N/A
PHROG	UHGV-2031076_84	phrog_35728	221.4	0	N/A	unknown function
UniRef90	UHGV-2031076_84	UniRef90_F3QQU4	82.8	3.5e-17	Conserved domain protein	N/A
eggNOG-mapper	UHGV-2031076_84	411476.BACOVA_03892	195.0	0	N/A	N/A
structural_annotation	UHGV-2031076_84	PF20338	N/A	N/A	N/A	N/A
PHROG	UHGV-2031076_85	phrog_345	98.4	8.3e-29	replication initiation O-like	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2031076_85	1121100.JCM6294_532	342.0	0	DnaD domain protein	N/A
COG	UHGV-2031076_85	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-2031076_85	PF20024,MF_01819,NF040642,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-2031076_86	K19789	250.1	0	radD; DNA repair protein RadD	N/A
PHROG	UHGV-2031076_86	phrog_16	169.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2031076_86	UniRef90_UPI001C03709F	608.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-2031076_86	357276.EL88_11480	590.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-2031076_86	mREase_IV_00004	50.6	0.000000000000018	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-2031076_86	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-2031076_86	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-2031076_86	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-2031076_86	PF00271,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A