UHGV-2086060 (vOTU-080472)

Viral Genome: UHGV-2086060

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-2086060
vOTU ID	vOTU-080472
Representative Genome?	Yes
Source	IMGVR4
Original Genome ID	3300029467\|Ga0244104_100009\|provirus_92799_128030
Associated Biosample	SAMEA3708509
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	99.9 (High-quality)
Trimmed?	No
CheckV Viral Markers	25
CheckV Host Markers	0
Recoded?	No

Viral Content
geNomad score	0.9775
Viral Hallmark Genes (geNomad)	8
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	69.49
Jumbo Phage?	No

Genome Content
Length (bps)	35,232
GC Content	58.13%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	50
CDS Density	94%
Average CDS Length (bps)	662.70
Total tRNA Genes	1
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-2086060_1	phrog_263	79.5	2.7e-23	holin	lysis
UniRef90	UHGV-2086060_1	UniRef90_E2ZIC2	150.0	1.4013e-45	Holin, SPP1 family	N/A
eggNOG-mapper	UHGV-2086060_1	748224.HMPREF9436_01413	150.0	0	SPP1 phage holin	N/A
Pfam	UHGV-2086060_1	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-2086060_1	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-2086060_1	PF04688,TIGR01592	N/A	N/A	N/A	N/A
PHROG	UHGV-2086060_2	phrog_4105	88.7	4.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-2086060_2	657322.FPR_27220	115.0	2.65e-32	N/A	N/A
KOfam	UHGV-2086060_4	K08640	95.5	8.6e-28	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-2086060_4	phrog_894	114.6	9.6e-34	endolysin	lysis
UniRef90	UHGV-2086060_4	UniRef90_A0A1C5NY12	276.0	0	Zinc D-Ala-D-Ala carboxypeptidase	N/A
eggNOG-mapper	UHGV-2086060_4	748224.HMPREF9436_03320	275.0	0	Peptidase M15	N/A
Pfam	UHGV-2086060_4	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-2086060_4	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2086060_4	PF05951,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-2086060_5	phrog_1382	49.5	0.000000000000034	N/A	unknown function
eggNOG-mapper	UHGV-2086060_5	33035.JPJF01000043_gene998	47.8	0.000000672	N/A	N/A
PHROG	UHGV-2086060_7	phrog_9534	281.8	0	head protein	head and packaging
eggNOG-mapper	UHGV-2086060_7	748224.HMPREF9436_00702	345.0	0	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-2086060_7	PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-2086060_8	phrog_538	200.0	0	minor tail protein	tail
UniRef90	UHGV-2086060_8	UniRef90_UPI0011064D4D	112.0	9.16e-25	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-2086060_8	748224.HMPREF9436_03324	641.0	0	N/A	N/A
Pfam	UHGV-2086060_8	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-2086060_8	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-2086060_9	phrog_33	42.1	0.000000000017	distal tail protein Dit	tail
UniRef90	UHGV-2086060_9	UniRef90_UPI00130E98E0	296.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-2086060_9	748224.HMPREF9436_03325	542.0	0	Phage tail protein	N/A
structural_annotation	UHGV-2086060_9	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-2086060_10	phrog_28775	922.4	0	tail length tape measure protein	tail
UniRef90	UHGV-2086060_10	UniRef90_A0A2J4JRN1	1142.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-2086060_10	748224.HMPREF9436_03326	417.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-2086060_10	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-2086060_10	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-2086060_10	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-2086060_10	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-2086060_11	phrog_706	129.4	2.5e-38	N/A	unknown function
UniRef90	UHGV-2086060_11	UniRef90_E2ZNP9	405.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-2086060_11	748224.HMPREF9436_03328	405.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-2086060_11	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-2086060_11	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-2086060_12	phrog_4450	172.1	0	N/A	unknown function
structural_annotation	UHGV-2086060_12	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-2086060_13	phrog_820	114.7	5.6e-34	major tail protein	tail
eggNOG-mapper	UHGV-2086060_13	748224.HMPREF9436_03330	334.0	0	N/A	N/A
structural_annotation	UHGV-2086060_13	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-2086060_14	phrog_3266	148.0	2.66247e-44	tail completion	connector
UniRef90	UHGV-2086060_14	UniRef90_UPI001F2730AA	85.5	2.1e-18	chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-2086060_14	748224.HMPREF9436_03331	298.0	0	N/A	N/A
structural_annotation	UHGV-2086060_14	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-2086060_15	phrog_556	92.4	3.4e-27	minor head protein	head and packaging
UniRef90	UHGV-2086060_15	UniRef90_UPI000B10EF5E	301.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-2086060_15	718252.FP2_06630	270.0	0	Minor capsid protein	N/A
Pfam	UHGV-2086060_15	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-2086060_15	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-2086060_16	phrog_3366	107.9	7.7e-32	N/A	unknown function
structural_annotation	UHGV-2086060_16	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-2086060_17	phrog_541	89.6	2.8e-26	head-tail adaptor	connector
PHROG	UHGV-2086060_18	phrog_10	182.4	0	major head protein	head and packaging
UniRef90	UHGV-2086060_18	UniRef90_A0A2A7AII3	597.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-2086060_18	1120998.AUFC01000030_gene2236	397.0	0	Phage capsid family	N/A
Pfam	UHGV-2086060_18	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2086060_18	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2086060_18	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2086060_18	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2086060_19	phrog_194	61.5	1.1e-17	head scaffolding protein	head and packaging
UniRef90	UHGV-2086060_19	UniRef90_E6U604	139.0	8.88e-39	Minor structural GP20 protein	N/A
eggNOG-mapper	UHGV-2086060_19	663278.Ethha_0093	139.0	1.49e-39	N/A	N/A
Pfam	UHGV-2086060_19	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-2086060_19	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-2086060_22	phrog_581	357.7	0	minor head protein	head and packaging
UniRef90	UHGV-2086060_22	UniRef90_A0A1C5NZK4	747.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-2086060_22	748224.HMPREF9436_03339	1062.0	0	N/A	N/A
Pfam	UHGV-2086060_22	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-2086060_22	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2086060_22	PF06152,PF12636	N/A	N/A	N/A	N/A
PHROG	UHGV-2086060_23	phrog_533	361.4	0	portal protein	head and packaging
UniRef90	UHGV-2086060_23	UniRef90_E2ZNR0	961.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-2086060_23	748224.HMPREF9436_03340	961.0	0	N/A	N/A
structural_annotation	UHGV-2086060_23	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-2086060_24	K06909	91.7	7.4e-27	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2086060_24	phrog_10250	101.1	9.5e-30	N/A	unknown function
UniRef90	UHGV-2086060_24	UniRef90_E2ZNR1	883.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-2086060_24	748224.HMPREF9436_03341	883.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-2086060_24	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-2086060_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2086060_24	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-2086060_25	K07474	160.4	0	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-2086060_25	phrog_51	155.1	0	terminase small subunit	head and packaging
UniRef90	UHGV-2086060_25	UniRef90_A0A3A6JQY9	330.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-2086060_25	742740.HMPREF9474_03499	176.0	0	Terminase Small Subunit	N/A
Pfam	UHGV-2086060_25	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-2086060_25	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
PHROG	UHGV-2086060_26	phrog_36	48.9	0.00000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-2086060_26	UniRef90_A0A3E2U224	134.0	1.2e-37	Sigma70_r4_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-2086060_26	748224.HMPREF9436_01463	264.0	0	N/A	N/A
structural_annotation	UHGV-2086060_26	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-2086060_27	K01160	46.5	0.00000000000094	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-2086060_27	phrog_140	92.2	6e-27	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2086060_27	UniRef90_UPI00122CFAB3	249.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-2086060_27	478749.BRYFOR_07588	144.0	7.8753e-43	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-2086060_27	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-2086060_27	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-2086060_27	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-2086060_28	K07505	354.8	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-2086060_28	phrog_2597	1069.4	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2086060_28	UniRef90_A0A2A6Z731	1425.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-2086060_28	742738.HMPREF9460_01357	841.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-2086060_28	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-2086060_28	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-2086060_28	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-2086060_28	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-2086060_29	K17677	352.5	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-2086060_29	phrog_16	278.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2086060_29	UniRef90_A0A3A6K1C0	1058.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-2086060_29	610130.Closa_1369	749.0	0	DEAD-like helicases superfamily	N/A
PADLOC	UHGV-2086060_29	mREase_IV_00005	136.7	2.1e-40	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-2086060_29	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-2086060_29	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-2086060_29	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-2086060_29	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-2086060_30	phrog_2698	198.2	0	N/A	unknown function
UniRef90	UHGV-2086060_30	UniRef90_A0A291T9B6	303.0	0	N/A	N/A
eggNOG-mapper	UHGV-2086060_30	394503.Ccel_3308	124.0	3.68e-34	N/A	N/A
structural_annotation	UHGV-2086060_30	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-2086060_31	phrog_124	235.3	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2086060_31	UniRef90_UPI00122C2B12	538.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-2086060_31	645991.Sgly_0321	376.0	0	AAA domain	N/A
Pfam	UHGV-2086060_31	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-2086060_31	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-2086060_32	K03546	55.6	6.3e-16	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-2086060_32	phrog_1499	461.9	0	N/A	unknown function
UniRef90	UHGV-2086060_32	UniRef90_A0A3A6KBP8	769.0	0	Chromosome segregation protein SMC	N/A
eggNOG-mapper	UHGV-2086060_32	1235798.C817_04766	484.0	0	AAA ATPase domain	N/A
Pfam	UHGV-2086060_32	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-2086060_32	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-2086060_32	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2086060_33	PF03677	N/A	N/A	N/A	N/A
UniRef90	UHGV-2086060_34	UniRef90_UPI001D0E65C2	121.0	2.95e-33	N/A	N/A
structural_annotation	UHGV-2086060_34	PF12957	N/A	N/A	N/A	N/A
PHROG	UHGV-2086060_37	phrog_37789	159.9	0	N/A	unknown function
PHROG	UHGV-2086060_38	phrog_32852	196.2	0	N/A	unknown function
UniRef90	UHGV-2086060_39	UniRef90_UPI00130EBC54	133.0	6.08e-39	N/A	N/A
eggNOG-mapper	UHGV-2086060_39	762051.LKI_01980	50.4	0.000000435	N/A	N/A
Pfam	UHGV-2086060_39	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-2086060_39	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-2086060_39	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-2086060_40	phrog_373	121.5	7.8e-36	anti-repressor	transcription regulation
UniRef90	UHGV-2086060_40	UniRef90_E2ZIF5	402.0	0	Phage regulatory protein, Rha family	N/A
eggNOG-mapper	UHGV-2086060_40	748224.HMPREF9436_01449	402.0	0	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-2086060_40	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-2086060_40	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-2086060_40	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-2086060_40	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
PHROG	UHGV-2086060_42	phrog_2232	170.3	0	N/A	unknown function
UniRef90	UHGV-2086060_42	UniRef90_UPI000C074118	177.0	0	N/A	N/A
eggNOG-mapper	UHGV-2086060_42	748224.HMPREF9436_01448	336.0	0	N/A	N/A
Pfam	UHGV-2086060_42	PF14337	N/A	N/A	Abortive infection alpha	Abi_alpha
structural_annotation	UHGV-2086060_42	PF14337,TIGR03899	N/A	N/A	N/A	N/A
KOfam	UHGV-2086060_47	K18830	63.4	3.9e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-2086060_47	phrog_8	50.1	0.000000000000033	transcriptional regulator	transcription regulation
UniRef90	UHGV-2086060_47	UniRef90_E2ZIF0	246.0	0	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-2086060_47	748224.HMPREF9436_01444	246.0	0	N/A	N/A
PADLOC	UHGV-2086060_47	retron_type_VI_hth_cluster2_1	45.5	0.000000000001	N/A	Retron
Pfam	UHGV-2086060_47	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-2086060_47	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2086060_47	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2086060_49	748224.HMPREF9436_01443	604.0	0	vancomycin resistance protein	N/A
COG	UHGV-2086060_49	COG2720	N/A	N/A	Vancomycin resistance protein YoaR (function unknown), contains peptidoglycan-binding and VanW domains	N/A
KOfam	UHGV-2086060_50	K14059	127.6	1.8e-37	int; integrase	N/A
PHROG	UHGV-2086060_50	phrog_1	112.3	5.4e-33	integrase	integration and excision
UniRef90	UHGV-2086060_50	UniRef90_A0A3F3JU91	751.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-2086060_50	748224.HMPREF9436_03382	636.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-2086060_50	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-2086060_50	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2086060_50	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2086060_50	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A