UHGV-2118496 (vOTU-085190)

Viral Genome: UHGV-2118496

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-2118496
vOTU ID	vOTU-085190
Representative Genome?	Yes
Source	IMGVR4
Original Genome ID	3300029556\|Ga0244975_100331\|provirus_52923_92252
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	93.76 (High-quality)
Trimmed?	No
CheckV Viral Markers	14
CheckV Host Markers	1
Recoded?	No

Viral Content
geNomad score	0.9798
Viral Hallmark Genes (geNomad)	11
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	32.4
Jumbo Phage?	No

Genome Content
Length (bps)	39,330
GC Content	57.30%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	57
CDS Density	91%
Average CDS Length (bps)	626.05
Total tRNA Genes	3
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 93.76)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-2118496_1	UniRef90_D4K2X1	1030.0	0	N/A	N/A
Pfam	UHGV-2118496_1	PF16465	N/A	N/A	N/A	DUF5046
KOfam	UHGV-2118496_2	K02040	158.2	0	pstS; phosphate transport system substrate-binding protein	N/A
PHROG	UHGV-2118496_2	phrog_5385	51.2	0.0000000000000052	phosphate transporter subunit	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2118496_2	UniRef90_A0A564TNI5	624.0	0	Phosphate-binding protein PstS 1	N/A
eggNOG-mapper	UHGV-2118496_2	718252.FP2_01660	634.0	0	PBP superfamily domain	N/A
Pfam	UHGV-2118496_2	PF12849	N/A	N/A	PBP superfamily domain	PBP_like_2
COG	UHGV-2118496_2	COG0226	N/A	N/A	ABC-type phosphate transport system, periplasmic component	N/A
eggNOG-mapper	UHGV-2118496_3	718252.FP2_01650	136.0	2.18e-41	N/A	N/A
structural_annotation	UHGV-2118496_5	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-2118496_6	phrog_20016	212.3	0	N/A	unknown function
UniRef90	UHGV-2118496_6	UniRef90_A0A285PT46	221.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-2118496_6	1226322.HMPREF1545_00077	192.0	0	N/A	N/A
structural_annotation	UHGV-2118496_6	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-2118496_7	phrog_16490	162.7	0	N/A	unknown function
eggNOG-mapper	UHGV-2118496_7	1408437.JNJN01000043_gene803	124.0	8.15e-32	N/A	N/A
PHROG	UHGV-2118496_8	phrog_22984	79.9	8.4e-24	N/A	unknown function
PHROG	UHGV-2118496_9	phrog_21718	115.2	4.6e-34	N/A	unknown function
eggNOG-mapper	UHGV-2118496_9	397290.C810_05210	97.1	2.37e-23	N/A	N/A
PHROG	UHGV-2118496_10	phrog_3754	96.5	2.3e-28	N/A	unknown function
eggNOG-mapper	UHGV-2118496_10	1235790.C805_00054	110.0	9.17e-30	N/A	N/A
eggNOG-mapper	UHGV-2118496_13	1033733.CAEK01000007_gene1628	83.6	3.13e-16	N/A	N/A
structural_annotation	UHGV-2118496_14	PF07374,MF_00245,NF001072,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-2118496_16	phrog_15303	74.4	1.2e-21	N/A	unknown function
KOfam	UHGV-2118496_18	K07273	153.4	1.4013e-45	acm; lysozyme	N/A
PHROG	UHGV-2118496_18	phrog_291	121.8	6e-36	endolysin	lysis
UniRef90	UHGV-2118496_18	UniRef90_A0A564U0D3	342.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-2118496_18	718252.FP2_04890	262.0	0	hydrolase, family 25	N/A
Pfam	UHGV-2118496_18	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-2118496_18	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-2118496_18	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
UniRef90	UHGV-2118496_19	UniRef90_A0A2J4JSG1	86.7	2.19e-21	XkdX family protein	N/A
eggNOG-mapper	UHGV-2118496_19	718252.FP2_16990	85.1	1.46e-21	Phage uncharacterised protein (Phage_XkdX)	N/A
structural_annotation	UHGV-2118496_19	PF09693	N/A	N/A	N/A	N/A
KOfam	UHGV-2118496_20	K00986	102.0	6.6e-30	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-2118496_20	phrog_1423	178.7	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2118496_20	UniRef90_UPI001A9A823D	603.0	0	RNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-2118496_20	1203606.HMPREF1526_00259	602.0	0	COG COG3344 Retron-type reverse transcriptase	N/A
PADLOC	UHGV-2118496_20	icity0040	68.3	1.9e-19	RT (reverse transcriptase)	CRISPR-CAS
COG	UHGV-2118496_20	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-2118496_20	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-2118496_21	phrog_5302	132.9	2.7e-39	tail protein	tail
UniRef90	UHGV-2118496_21	UniRef90_UPI001CBAF2B2	410.0	0	carboxypeptidase-like regulatory domain-containing protein	N/A
eggNOG-mapper	UHGV-2118496_21	1203606.HMPREF1526_00261	545.0	0	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-2118496_21	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-2118496_21	PF12985	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2118496_22	1235792.C808_00094	90.9	5.18e-20	phage tail	N/A
COG	UHGV-2118496_22	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-2118496_22	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-2118496_23	phrog_3558	274.9	0	tail protein	tail
UniRef90	UHGV-2118496_23	UniRef90_UPI001C01D15B	682.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-2118496_23	1120933.ATUY01000002_gene164	156.0	9.66e-38	Prophage endopeptidase tail	N/A
Pfam	UHGV-2118496_23	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-2118496_23	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-2118496_23	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-2118496_24	phrog_28775	123.0	1.5e-36	tail length tape measure protein	tail
UniRef90	UHGV-2118496_24	UniRef90_A0A844DDD5	631.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-2118496_24	1492737.FEM08_12070	141.0	3.81e-32	tape measure	N/A
Pfam	UHGV-2118496_24	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-2118496_24	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-2118496_24	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-2118496_24	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-2118496_27	phrog_885	57.7	1.4e-16	major tail protein	tail
eggNOG-mapper	UHGV-2118496_27	1504822.CCNO01000012_gene492	98.6	4.91e-23	N/A	N/A
structural_annotation	UHGV-2118496_27	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2118496_28	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-2118496_29	phrog_17977	43.1	0.0000000000059	N/A	unknown function
UniRef90	UHGV-2118496_29	UniRef90_A0A844DHJ8	127.0	2.12e-35	Phage head closure protein	N/A
structural_annotation	UHGV-2118496_29	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2118496_31	phrog_247	210.0	0	major head protein	head and packaging
UniRef90	UHGV-2118496_31	UniRef90_UPI001BA5448B	249.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-2118496_31	33035.JPJF01000106_gene3132	369.0	0	N/A	N/A
Pfam	UHGV-2118496_31	PF20036	N/A	N/A	Major capsid protein 13-like	Gp13-like
structural_annotation	UHGV-2118496_31	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2118496_32	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-2118496_33	phrog_5	51.2	0.000000000000032	tail completion or Neck1 protein	connector
UniRef90	UHGV-2118496_33	UniRef90_A0A6N7TNP6	287.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-2118496_33	1123309.AQYB01000018_gene814	91.3	1.59e-21	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-2118496_33	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-2118496_33	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-2118496_33	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-2118496_35	phrog_8680	203.7	0	N/A	unknown function
UniRef90	UHGV-2118496_35	UniRef90_A0A844D688	447.0	0	N/A	N/A
eggNOG-mapper	UHGV-2118496_35	1423790.BN53_04265	177.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
Pfam	UHGV-2118496_35	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-2118496_35	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-2118496_35	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-2118496_36	phrog_2468	82.1	5e-24	head morphogenesis	head and packaging
UniRef90	UHGV-2118496_36	UniRef90_A0A6N7TLR7	613.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-2118496_36	1504822.CCNO01000013_gene286	108.0	6.38e-23	cell adhesion	N/A
Pfam	UHGV-2118496_36	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-2118496_36	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2118496_36	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-2118496_38	phrog_64	119.1	1.6e-35	portal protein	head and packaging
UniRef90	UHGV-2118496_38	UniRef90_A0A6N7TNT3	878.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-2118496_38	642492.Clole_2764	79.3	0.000000000000538	phage portal protein, SPP1	N/A
Pfam	UHGV-2118496_38	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-2118496_38	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-2118496_39	K06909	139.4	3.30006e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2118496_39	phrog_10250	172.5	0	N/A	unknown function
UniRef90	UHGV-2118496_39	UniRef90_A0A844D8I4	835.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-2118496_39	411490.ANACAC_00783	490.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-2118496_39	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-2118496_39	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-2118496_39	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2118496_39	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-2118496_40	UniRef90_UPI0018CC2891	112.0	4.94e-29	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2118496_40	1235790.C805_00037	108.0	6.17e-28	N/A	N/A
structural_annotation	UHGV-2118496_40	PF04218	N/A	N/A	N/A	N/A
PHROG	UHGV-2118496_42	phrog_36	57.2	3e-16	transcriptional regulator	transcription regulation
structural_annotation	UHGV-2118496_42	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-2118496_44	K01160	52.4	0.000000000000015	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-2118496_44	phrog_34	51.4	0.000000000000022	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2118496_44	UniRef90_A0A6N7TND6	221.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-2118496_44	875454.BAEW01000002_gene491	132.0	3.9e-38	Endodeoxyribonuclease RusA	N/A
COG	UHGV-2118496_44	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-2118496_44	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-2118496_45	phrog_3136	119.4	1.7e-35	N/A	unknown function
UniRef90	UHGV-2118496_45	UniRef90_A0A6N7TMC2	213.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-2118496_45	1235793.C809_02645	62.0	0.00000000525	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-2118496_45	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-2118496_45	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-2118496_47	phrog_757	104.3	8.9e-31	DNA methyltransferase	other
UniRef90	UHGV-2118496_47	UniRef90_UPI001A9B5584	236.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-2118496_47	748224.HMPREF9436_03069	261.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-2118496_47	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-2118496_47	PF04445,MF_00341,TIGR00537,COG0270	N/A	N/A	N/A	N/A
UniRef90	UHGV-2118496_50	UniRef90_A0A845R8R0	106.0	6.87e-27	N/A	N/A
structural_annotation	UHGV-2118496_52	PF01775,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2118496_53	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-2118496_54	K02086	68.2	1.2e-19	dnaD; DNA replication protein	N/A
PHROG	UHGV-2118496_54	phrog_186	76.4	4.1e-22	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2118496_54	UniRef90_A0A6N7TLH4	265.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-2118496_54	877411.JMMA01000002_gene2292	71.2	0.0000000000106	N/A	N/A
Pfam	UHGV-2118496_54	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-2118496_54	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-2118496_54	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-2118496_54	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
KOfam	UHGV-2118496_55	K03111	143.1	2.90069e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-2118496_55	phrog_44	138.7	2.59997e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2118496_55	UniRef90_D4K451	268.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-2118496_55	718252.FP2_06770	268.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-2118496_55	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-2118496_55	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-2118496_55	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-2118496_55	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-2118496_55	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-2118496_56	phrog_561	111.3	8.4e-33	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2118496_56	UniRef90_UPI0011C8A287	148.0	3.31001e-41	recombinase RecT	N/A
eggNOG-mapper	UHGV-2118496_56	33035.JPJF01000071_gene4462	147.0	2.34998e-41	N/A	N/A
structural_annotation	UHGV-2118496_56	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A