UHGV-2182316 (vOTU-103228)

Viral Genome: UHGV-2182316

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-2182316
vOTU ID	vOTU-103228
Representative Genome?	Yes
Source	IMGVR4
Original Genome ID	3300029878\|Ga0245327_100029\|provirus_73275_102746
Associated Biosample	SAMEA3449377
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	76.54 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	14
CheckV Host Markers	1
Recoded?	No

Viral Content
geNomad score	0.975
Viral Hallmark Genes (geNomad)	5
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	52.65
Jumbo Phage?	No

Genome Content
Length (bps)	29,472
GC Content	42.27%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	43
CDS Density	89%
Average CDS Length (bps)	613.26
Total tRNA Genes	1
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 76.54)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2182316_1	K14059	181.5	0	int; integrase	N/A
PHROG	UHGV-2182316_1	phrog_1	184.7	0	integrase	integration and excision
UniRef90	UHGV-2182316_1	UniRef90_A0A3R6PQN0	699.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-2182316_1	1280698.AUJS01000007_gene999	355.0	0	Phage integrase family	N/A
Pfam	UHGV-2182316_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2182316_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2182316_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-2182316_2	phrog_2158	155.4	0	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2182316_2	UniRef90_A0A415L598	348.0	0	Abi family protein	N/A
eggNOG-mapper	UHGV-2182316_2	411490.ANACAC_00817	233.0	0	Abi-like protein	N/A
PADLOC	UHGV-2182316_2	AbiD	116.5	5e-34	AbiD	Abi
Pfam	UHGV-2182316_2	PF07751	N/A	N/A	Abi-like protein	Abi_2
COG	UHGV-2182316_2	COG4823	N/A	N/A	Abortive infection bacteriophage resistance protein	N/A
structural_annotation	UHGV-2182316_2	PF07751,COG4823	N/A	N/A	N/A	N/A
KOfam	UHGV-2182316_3	K01356	152.5	4.2039e-45	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-2182316_3	phrog_4	123.0	2.9e-36	transcriptional repressor	transcription regulation
UniRef90	UHGV-2182316_3	UniRef90_A0A1C5X479	331.0	0	LexA repressor	N/A
eggNOG-mapper	UHGV-2182316_3	411490.ANACAC_00815	233.0	0	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-2182316_3	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
Pfam	UHGV-2182316_3	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-2182316_3	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-2182316_3	PF01381,PF00717,MF_00015,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-2182316_5	K07729	49.3	0.00000000000011	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-2182316_5	phrog_2104	44.2	0.0000000000031	N/A	unknown function
UniRef90	UHGV-2182316_5	UniRef90_A0A173YFL5	95.5	2.37e-24	DNA-binding transcriptional repressor PuuR	N/A
eggNOG-mapper	UHGV-2182316_5	1256908.HMPREF0373_00646	90.1	5.88e-23	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2182316_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2182316_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2182316_5	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-2182316_7	UniRef90_A0A3R6F768	117.0	6.29e-33	XRE family transcriptional regulator	N/A
Pfam	UHGV-2182316_7	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-2182316_7	PF01381,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2182316_9	PF12286,MF_00839,NF007780	N/A	N/A	N/A	N/A
KOfam	UHGV-2182316_10	K01449	79.5	5.8e-23	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-2182316_10	phrog_17417	77.5	2e-22	N/A	unknown function
UniRef90	UHGV-2182316_10	UniRef90_A0A416INU5	334.0	0	Cell wall hydrolase	N/A
eggNOG-mapper	UHGV-2182316_10	742733.HMPREF9469_05073	76.3	0.000000000000013	Cell Wall Hydrolase	N/A
Pfam	UHGV-2182316_10	PF07486	N/A	N/A	Cell Wall Hydrolase	Hydrolase_2
COG	UHGV-2182316_10	COG3773	N/A	N/A	Cell wall hydrolase CwlJ, involved in spore germination	N/A
structural_annotation	UHGV-2182316_10	PF07486,TIGR02869,COG3773	N/A	N/A	N/A	N/A
PHROG	UHGV-2182316_11	phrog_3584	159.9	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2182316_11	483218.BACPEC_01173	255.0	0	N/A	N/A
structural_annotation	UHGV-2182316_11	PF21578,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-2182316_12	K03469	50.4	0.000000000000042	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-2182316_12	phrog_531	53.8	0.0000000000000037	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2182316_12	UniRef90_A0A3R6KTE4	228.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-2182316_12	643648.Slip_0653	76.6	9.56e-16	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-2182316_12	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-2182316_12	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-2182316_12	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2182316_13	1235792.C808_00065	197.0	0	N/A	N/A
PHROG	UHGV-2182316_14	phrog_8470	244.9	0	N/A	unknown function
UniRef90	UHGV-2182316_14	UniRef90_UPI001D086F83	244.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-2182316_14	97139.C824_00039	252.0	0	PcfJ-like protein	N/A
Pfam	UHGV-2182316_14	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-2182316_14	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-2182316_15	phrog_15077	116.2	4e-34	N/A	unknown function
UniRef90	UHGV-2182316_15	UniRef90_A5ZPN2	129.0	2.27e-30	N/A	N/A
eggNOG-mapper	UHGV-2182316_15	411459.RUMOBE_00949	129.0	3.8e-31	N/A	N/A
COG	UHGV-2182316_15	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-2182316_15	PF11300,NF038070	N/A	N/A	N/A	N/A
UniRef90	UHGV-2182316_16	UniRef90_A0A3A8YMR6	101.0	1.24e-26	XRE family transcriptional regulator	N/A
Pfam	UHGV-2182316_16	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2182316_16	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-2182316_17	K07729	50.3	0.000000000000053	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-2182316_17	phrog_8	63.6	4.8e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-2182316_17	UniRef90_A0A1C5W216	120.0	5.21e-34	HTH-type transcriptional regulator immR	N/A
eggNOG-mapper	UHGV-2182316_17	397290.C810_01482	112.0	1.36e-31	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-2182316_17	retron_type_VI_hth_cluster2_1	45.9	0.0000000000016	N/A	Retron
Pfam	UHGV-2182316_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2182316_17	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-2182316_17	PF12844,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-2182316_19	K07741	127.6	2.2e-37	antB; anti-repressor protein	N/A
PHROG	UHGV-2182316_19	phrog_130	261.0	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-2182316_19	UniRef90_A0A6N9QEI3	318.0	0	Phage repressor protein/antirepressor Ant	N/A
eggNOG-mapper	UHGV-2182316_19	180332.JTGN01000008_gene4114	302.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-2182316_19	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-2182316_19	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-2182316_19	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-2182316_19	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
UniRef90	UHGV-2182316_20	UniRef90_A0A417WAJ1	146.0	3.19496e-43	HNH endonuclease	N/A
eggNOG-mapper	UHGV-2182316_20	1235800.C819_02254	134.0	9.11e-39	HNH nucleases	N/A
structural_annotation	UHGV-2182316_21	NF011508	N/A	N/A	N/A	N/A
PHROG	UHGV-2182316_23	phrog_309	159.7	0	terminase small subunit	head and packaging
UniRef90	UHGV-2182316_23	UniRef90_UPI000AC737F1	162.0	0	helix-turn-helix domain containing protein	N/A
eggNOG-mapper	UHGV-2182316_23	411470.RUMGNA_02210	208.0	0	transposase activity	N/A
COG	UHGV-2182316_23	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-2182316_23	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-2182316_24	K06909	68.0	1.3e-19	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2182316_24	phrog_2	86.1	6.9e-25	terminase large subunit	head and packaging
UniRef90	UHGV-2182316_24	UniRef90_A0A3R6P677	908.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-2182316_24	1235790.C805_00040	512.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-2182316_24	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-2182316_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2182316_24	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2182316_25	phrog_533	209.7	0	portal protein	head and packaging
UniRef90	UHGV-2182316_25	UniRef90_UPI00164B7587	671.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-2182316_25	645991.Sgly_0336	153.0	1.17e-38	N/A	N/A
structural_annotation	UHGV-2182316_25	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-2182316_26	phrog_581	276.9	0	minor head protein	head and packaging
UniRef90	UHGV-2182316_26	UniRef90_UPI00164C8416	565.0	0	polymorphic toxin type 50 domain-containing protein	N/A
eggNOG-mapper	UHGV-2182316_26	545697.HMPREF0216_02846	218.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-2182316_26	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-2182316_26	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
COG	UHGV-2182316_26	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-2182316_29	phrog_194	86.6	3.7e-25	head scaffolding protein	head and packaging
UniRef90	UHGV-2182316_29	UniRef90_A0A1C5VV13	173.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-2182316_29	742765.HMPREF9457_02126	110.0	1.07e-27	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-2182316_29	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-2182316_30	phrog_422	206.7	0	major head protein	head and packaging
eggNOG-mapper	UHGV-2182316_30	1235794.C811_01371	307.0	0	N/A	N/A
structural_annotation	UHGV-2182316_30	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-2182316_31	phrog_58	124.8	8.7e-37	tail length tape measure protein	tail
COG	UHGV-2182316_31	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-2182316_32	phrog_33	72.7	7.9e-21	distal tail protein Dit	tail
UniRef90	UHGV-2182316_32	UniRef90_A0A416INB6	558.0	0	Phage tail family protein	N/A
eggNOG-mapper	UHGV-2182316_32	1321782.HMPREF1986_02277	139.0	1.05e-36	PFAM Phage tail protein	N/A
COG	UHGV-2182316_32	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-2182316_32	PF16774,PF21766,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-2182316_33	phrog_538	142.7	2.29953e-42	minor tail protein	tail
UniRef90	UHGV-2182316_33	UniRef90_UPI00164C9B03	531.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-2182316_33	1321782.HMPREF1986_02278	171.0	0	N/A	N/A
Pfam	UHGV-2182316_33	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-2182316_33	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-2182316_34	phrog_1220	104.7	1.2e-30	head protein	head and packaging
eggNOG-mapper	UHGV-2182316_34	1460635.JCM19038_3478	57.4	0.0000000813	N/A	N/A
PHROG	UHGV-2182316_36	phrog_5181	64.1	1.5e-18	N/A	unknown function
eggNOG-mapper	UHGV-2182316_36	1357275.AVEL02000115_gene4270	68.6	0.00000000000501	Phage tail-collar fibre protein	N/A
COG	UHGV-2182316_36	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-2182316_39	phrog_199	91.1	1.2e-26	holin	lysis
UniRef90	UHGV-2182316_39	UniRef90_A0A3R6P3L6	246.0	0	Holin	N/A
eggNOG-mapper	UHGV-2182316_39	742740.HMPREF9474_02333	213.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-2182316_39	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-2182316_39	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-2182316_39	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-2182316_39	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-2182316_40	K01448	100.4	2.2e-29	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-2182316_40	phrog_435	160.5	0	endolysin	lysis
UniRef90	UHGV-2182316_40	UniRef90_A0A416INH6	533.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-2182316_40	552396.HMPREF0863_00263	175.0	0	hmm pf01520	N/A
Pfam	UHGV-2182316_40	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-2182316_40	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-2182316_40	PF01520,PF01471,MF_00562,TIGR02883,NF038080,COG0860,COG3409	N/A	N/A	N/A	N/A
UniRef90	UHGV-2182316_41	UniRef90_A0A3E2T5R6	70.5	0.00000000000000736	Ribbon-helix-helix protein, CopG family	N/A
eggNOG-mapper	UHGV-2182316_41	663952.SDD27957_09060	49.7	0.000000191	N/A	N/A
structural_annotation	UHGV-2182316_41	PF01402,NF041793,COG3905	N/A	N/A	N/A	N/A
PHROG	UHGV-2182316_42	phrog_2379	126.9	1.2e-37	anti-repressor	transcription regulation
UniRef90	UHGV-2182316_42	UniRef90_A0A3E5GSS8	204.0	0	ORF6N domain-containing protein	N/A
eggNOG-mapper	UHGV-2182316_42	1235798.C817_03462	161.0	0	ORF6N domain	N/A
Pfam	UHGV-2182316_42	PF10543	N/A	N/A	ORF6N domain	ORF6N
structural_annotation	UHGV-2182316_42	PF10543,PF15188,MF_01506,TIGR02681,COG3646	N/A	N/A	N/A	N/A