UHGV-2184288 (vOTU-065244)

Viral Genome: UHGV-2184288

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-2184288
vOTU ID	vOTU-065244
Representative Genome?	Yes
Source	IMGVR4
Original Genome ID	3300029858\|Ga0245300_100653
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	99.9 (High-quality)
Trimmed?	No
CheckV Viral Markers	13
CheckV Host Markers	1
Recoded?	No

Viral Content
geNomad score	0.9711
Viral Hallmark Genes (geNomad)	8
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	18.47
Jumbo Phage?	No

Genome Content
Length (bps)	32,224
GC Content	53.17%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	46
CDS Density	90%
Average CDS Length (bps)	633.72
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-2184288_3	phrog_18725	78.2	4.4e-24	N/A	unknown function
eggNOG-mapper	UHGV-2184288_3	1226322.HMPREF1545_00062	124.0	3.59e-33	N/A	N/A
structural_annotation	UHGV-2184288_3	PF13754,COG2372	N/A	N/A	N/A	N/A
UniRef90	UHGV-2184288_4	UniRef90_A0A2U1B9M7	104.0	1.34e-27	mRNA-degrading endonuclease RelE of RelBE toxin-antitoxin system	N/A
eggNOG-mapper	UHGV-2184288_4	546271.Selsp_0283	49.7	0.000000881	Plasmid stabilization system	N/A
COG	UHGV-2184288_4	COG2026	N/A	N/A	mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system	N/A
structural_annotation	UHGV-2184288_4	PF05016,TIGR00053,COG2026	N/A	N/A	N/A	N/A
PHROG	UHGV-2184288_5	phrog_33232	96.7	1.5e-28	N/A	unknown function
UniRef90	UHGV-2184288_5	UniRef90_A0A2U1B9L8	102.0	1.26e-26	HicB-like protein involved in pilus formation	N/A
eggNOG-mapper	UHGV-2184288_5	645991.Sgly_2407	60.1	0.0000000000607	protein encoded in hypervariable junctions of pilus gene clusters	N/A
Pfam	UHGV-2184288_5	PF05534	N/A	N/A	HicB family	HicB
COG	UHGV-2184288_5	COG4226	N/A	N/A	Predicted nuclease of the RNAse H fold, HicB family	N/A
structural_annotation	UHGV-2184288_5	PF05534,NF041793,COG4226	N/A	N/A	N/A	N/A
KOfam	UHGV-2184288_6	K01361	54.1	8.9e-16	E3.4.21.96; lactocepin [EC:3.4.21.96]	N/A
PHROG	UHGV-2184288_6	phrog_11157	229.8	0	N/A	unknown function
UniRef90	UHGV-2184288_6	UniRef90_UPI001C10C6DC	368.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-2184288_6	1232446.BAIE02000011_gene1582	239.0	0	N/A	N/A
Pfam	UHGV-2184288_6	PF19077	N/A	N/A	Bacterial Ig-like domain	Big_13
Pfam	UHGV-2184288_6	PF09136	N/A	N/A	Glucodextranase, domain B	Glucodextran_B
COG	UHGV-2184288_6	COG3292	N/A	N/A	Periplasmic ligand-binding sensor domain	N/A
structural_annotation	UHGV-2184288_6	PF09136,PF13205,PF13754,MF_04116,NF032891,COG2372,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-2184288_8	phrog_13879	304.4	0	N/A	unknown function
eggNOG-mapper	UHGV-2184288_8	1235797.C816_02659	302.0	0	N/A	N/A
structural_annotation	UHGV-2184288_8	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2184288_9	1235797.C816_02660	102.0	2.28e-26	N/A	N/A
structural_annotation	UHGV-2184288_9	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-2184288_10	phrog_58	141.7	2.24208e-44	tail length tape measure protein	tail
UniRef90	UHGV-2184288_10	UniRef90_A0A7X8V908	320.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-2184288_10	431943.CKL_2631	307.0	0	tape measure	N/A
COG	UHGV-2184288_10	COG5185	N/A	N/A	Chromosome segregation protein NDC80, interacts with SMC proteins	N/A
structural_annotation	UHGV-2184288_10	PF20155,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2184288_11	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-2184288_12	phrog_88	113.6	4.3e-34	major tail protein	tail
UniRef90	UHGV-2184288_12	UniRef90_UPI0018771F27	291.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-2184288_12	33035.JPJF01000039_gene278	123.0	1.45e-32	N/A	N/A
NCBIFam	UHGV-2184288_12	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-2184288_12	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-2184288_13	UniRef90_A0A1C6FG30	148.0	6.0396e-43	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-2184288_13	1235798.C817_04589	102.0	1.18e-25	N/A	N/A
structural_annotation	UHGV-2184288_13	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2184288_14	908340.HMPREF9406_2574	93.2	2.55e-23	N/A	N/A
structural_annotation	UHGV-2184288_14	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-2184288_15	phrog_19734	119.4	1.8e-35	N/A	unknown function
UniRef90	UHGV-2184288_15	UniRef90_A0A6I7GNS7	142.0	2.84996e-41	Phage head closure protein	N/A
eggNOG-mapper	UHGV-2184288_15	349161.Dred_2602	89.0	4.18e-21	N/A	N/A
structural_annotation	UHGV-2184288_15	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2184288_16	phrog_749	72.5	4.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-2184288_16	349161.Dred_2603	98.2	2.71e-25	N/A	N/A
PHROG	UHGV-2184288_17	phrog_10	140.9	1.19993e-41	major head protein	head and packaging
UniRef90	UHGV-2184288_17	UniRef90_UPI0018757887	645.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-2184288_17	1235792.C808_00086	454.0	0	Phage capsid family	N/A
Pfam	UHGV-2184288_17	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-2184288_17	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-2184288_17	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2184288_17	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2184288_17	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-2184288_18	K01358	111.2	1.2e-32	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-2184288_18	phrog_94	163.7	0	head maturation protease	head and packaging
UniRef90	UHGV-2184288_18	UniRef90_UPI00111E41DA	159.0	4.2039e-45	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-2184288_18	1232452.BAIB02000007_gene1626	139.0	3.93e-38	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-2184288_18	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-2184288_18	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-2184288_18	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-2184288_19	phrog_12	121.8	4e-36	portal protein	head and packaging
UniRef90	UHGV-2184288_19	UniRef90_UPI0018755FA4	585.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-2184288_19	610130.Closa_0742	327.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-2184288_19	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-2184288_19	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-2184288_19	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-2184288_19	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-2184288_20	phrog_9	253.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-2184288_20	UniRef90_A0A1C6FFC9	926.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-2184288_20	1235792.C808_00083	617.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-2184288_20	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-2184288_20	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2184288_20	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2184288_21	phrog_5110	65.3	7e-19	terminase small subunit	head and packaging
UniRef90	UHGV-2184288_21	UniRef90_UPI001874172A	124.0	6.51e-35	P27 family phage terminase small subunit	N/A
Pfam	UHGV-2184288_21	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-2184288_21	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-2184288_23	phrog_36	55.3	0.0000000000000014	transcriptional regulator	transcription regulation
UniRef90	UHGV-2184288_23	UniRef90_UPI00164ADA1B	168.0	0	sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-2184288_23	768710.DesyoDRAFT_5229	60.5	0.00000000166	N/A	N/A
structural_annotation	UHGV-2184288_23	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-2184288_24	phrog_3584	131.8	4.7e-39	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2184288_24	537013.CLOSTMETH_02141	83.2	8.11e-17	N/A	N/A
structural_annotation	UHGV-2184288_24	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-2184288_25	phrog_13999	42.9	0.0000000000052	N/A	unknown function
PHROG	UHGV-2184288_26	phrog_954	174.1	0	DNA methyltransferase	other
UniRef90	UHGV-2184288_26	UniRef90_UPI0004115370	224.0	0	methyltransferase	N/A
eggNOG-mapper	UHGV-2184288_26	411461.DORFOR_01143	226.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-2184288_26	MTase_II_00074	145.6	3.40516e-43	Type II methyltransferase	RM
Pfam	UHGV-2184288_26	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-2184288_26	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-2184288_26	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
PHROG	UHGV-2184288_27	phrog_874	166.6	0	N/A	unknown function
eggNOG-mapper	UHGV-2184288_27	411468.CLOSCI_00298	145.0	9.98005e-41	N/A	N/A
structural_annotation	UHGV-2184288_27	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
PHROG	UHGV-2184288_28	phrog_4433	148.0	0	N/A	unknown function
eggNOG-mapper	UHGV-2184288_28	665950.HMPREF1025_01373	117.0	6.92e-29	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-2184288_28	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
eggNOG-mapper	UHGV-2184288_29	521098.Aaci_0567	79.7	0.00000000000000226	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-2184288_29	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-2184288_30	K00558	51.0	0.000000000000014	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-2184288_30	phrog_363	74.5	1.2e-21	DNA methyltransferase	other
UniRef90	UHGV-2184288_30	UniRef90_A0A1Y4LA93	122.0	9.56e-34	DNA (cytosine-5-)-methyltransferase (Fragment)	N/A
eggNOG-mapper	UHGV-2184288_30	742738.HMPREF9460_04053	144.0	1.65003e-41	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-2184288_30	MTase_II_00058	42.5	0.000000000014	Type II methyltransferase	RM
Pfam	UHGV-2184288_30	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-2184288_30	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-2184288_31	K00390	119.8	2.2e-35	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-2184288_31	phrog_424	120.9	8.4e-36	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2184288_31	UniRef90_A0A1Y4LU27	322.0	0	Adenylyl-sulfate reductase	N/A
eggNOG-mapper	UHGV-2184288_31	1408437.JNJN01000032_gene2312	311.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-2184288_31	BrxP_00001	85.3	5.9e-25	BrxP	BREX
Pfam	UHGV-2184288_31	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-2184288_31	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-2184288_31	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-2184288_32	phrog_9298	299.9	0	radical SAM domain protein	other
UniRef90	UHGV-2184288_32	UniRef90_A0A2Z4QA35	378.0	0	Putative radical SAM domain protein	N/A
eggNOG-mapper	UHGV-2184288_32	1235800.C819_00846	334.0	0	N/A	N/A
COG	UHGV-2184288_32	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-2184288_32	MF_01864,NF010916,COG2516	N/A	N/A	N/A	N/A
PHROG	UHGV-2184288_38	phrog_750	87.9	7.4e-26	N/A	unknown function
eggNOG-mapper	UHGV-2184288_38	742723.HMPREF9477_00931	76.6	1.01e-16	N/A	N/A
structural_annotation	UHGV-2184288_38	PF13835,NF040858	N/A	N/A	N/A	N/A
UniRef90	UHGV-2184288_39	UniRef90_A0A1Y4THT0	82.0	8.39e-19	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-2184288_39	445972.ANACOL_00136	72.0	9.75e-16	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-2184288_39	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-2184288_39	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-2184288_40	K01356	79.0	5e-23	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-2184288_40	phrog_4	116.4	2.5e-34	transcriptional repressor	transcription regulation
UniRef90	UHGV-2184288_40	UniRef90_A0A7X5E3N4	204.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2184288_40	1507.HMPREF0262_00168	149.0	2.72006e-41	Peptidase S24-like	N/A
Pfam	UHGV-2184288_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-2184288_40	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-2184288_40	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2184288_40	PF00717,PF01381,MF_00015,NF041951,NF007621,COG2932	N/A	N/A	N/A	N/A
KOfam	UHGV-2184288_41	K02342	186.4	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-2184288_41	phrog_192	163.9	0	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2184288_41	UniRef90_A0A1Y4S764	142.0	9.59e-34	BRCT domain-containing protein	N/A
eggNOG-mapper	UHGV-2184288_41	264732.Moth_1154	121.0	1.81e-26	HELICc2	N/A
PADLOC	UHGV-2184288_41	cd06127	129.3	1.7e-38	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-2184288_41	PF00929	N/A	N/A	Exonuclease	RNase_T
Pfam	UHGV-2184288_41	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
NCBIFam	UHGV-2184288_41	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-2184288_41	COG1199	N/A	N/A	Rad3-related DNA helicase DinG	N/A
KOfam	UHGV-2184288_42	K18843	66.7	4.5e-19	hicB; antitoxin HicB	N/A
PHROG	UHGV-2184288_42	phrog_497	90.2	3e-26	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2184288_42	UniRef90_A0A833MCF6	149.0	5.74532e-44	Type II toxin-antitoxin system HicB family antitoxin	N/A
eggNOG-mapper	UHGV-2184288_42	1121422.AUMW01000002_gene2294	147.0	7.9874e-44	HicB_like antitoxin of bacterial toxin-antitoxin system	N/A
Pfam	UHGV-2184288_42	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-2184288_42	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-2184288_42	PF15919,COG1598	N/A	N/A	N/A	N/A
PHROG	UHGV-2184288_43	phrog_353	76.8	1.6e-22	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2184288_43	UniRef90_A0A6N8IGI7	101.0	5.98e-27	Addiction module toxin, HicA family	N/A
eggNOG-mapper	UHGV-2184288_43	502558.EGYY_24930	105.0	4.25e-29	HicA toxin of bacterial toxin-antitoxin,	N/A
Pfam	UHGV-2184288_43	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
COG	UHGV-2184288_43	COG1724	N/A	N/A	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	N/A
structural_annotation	UHGV-2184288_43	PF07927,COG1724	N/A	N/A	N/A	N/A
KOfam	UHGV-2184288_44	K06400	366.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-2184288_44	phrog_95	360.4	0	integrase	integration and excision
UniRef90	UHGV-2184288_44	UniRef90_UPI00189960B8	478.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-2184288_44	1235835.C814_03413	439.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-2184288_44	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-2184288_44	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-2184288_44	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-2184288_44	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-2184288_44	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2184288_46	591019.Shell_0170	50.4	0.00000616	PFAM thymidylate kinase	N/A
Pfam	UHGV-2184288_46	PF02223	N/A	N/A	Thymidylate kinase	Thymidylate_kin
COG	UHGV-2184288_46	COG0125	N/A	N/A	Thymidylate kinase	N/A