UHGV-2185346 (vOTU-096460)

Viral Genome: UHGV-2185346

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-2185346
vOTU ID	vOTU-096460
Representative Genome?	Yes
Source	IMGVR4
Original Genome ID	3300029790\|Ga0242825_1000123\|provirus_66218_100275
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	81.44 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	10
CheckV Host Markers	2
Recoded?	No

Viral Content
geNomad score	0.9706
Viral Hallmark Genes (geNomad)	10
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	30.21
Jumbo Phage?	No

Genome Content
Length (bps)	28,691
GC Content	33.20%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	43
CDS Density	89%
Average CDS Length (bps)	595.19
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 81.44)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2185346_2	K01447	116.9	2.4e-34	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-2185346_2	phrog_670	143.0	1.90016e-42	endolysin	lysis
UniRef90	UHGV-2185346_2	UniRef90_A0A1C5W6P4	211.0	0	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
eggNOG-mapper	UHGV-2185346_2	1519439.JPJG01000060_gene1899	204.0	0	Ami_2	N/A
Pfam	UHGV-2185346_2	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-2185346_2	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-2185346_2	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-2185346_3	phrog_199	86.1	3.7e-25	holin	lysis
UniRef90	UHGV-2185346_3	UniRef90_A0A414P9N2	144.0	5.55054e-42	Holin	N/A
eggNOG-mapper	UHGV-2185346_3	1232453.BAIF02000059_gene1615	139.0	9.91993e-41	Bacteriophage holin family	N/A
Pfam	UHGV-2185346_3	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-2185346_3	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-2185346_3	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-2185346_3	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-2185346_5	phrog_35892	97.9	1.1e-38	N/A	unknown function
Pfam	UHGV-2185346_5	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
NCBIFam	UHGV-2185346_5	TIGR02167.1	N/A	N/A	bacterial surface protein 26-residue repeat	N/A
KOfam	UHGV-2185346_6	K19224	116.2	3.5e-34	lytE, cwlF; peptidoglycan DL-endopeptidase LytE [EC:3.4.-.-]	N/A
PHROG	UHGV-2185346_6	phrog_400	188.5	0	tail protein	tail
UniRef90	UHGV-2185346_6	UniRef90_U5S2Z2	125.0	8.95e-28	NLP/P60 protein	N/A
eggNOG-mapper	UHGV-2185346_6	411469.EUBHAL_00425	107.0	7.17e-22	N/A	N/A
Pfam	UHGV-2185346_6	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
COG	UHGV-2185346_6	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
PHROG	UHGV-2185346_7	phrog_12	201.4	0	portal protein	head and packaging
UniRef90	UHGV-2185346_7	UniRef90_A0A1U7M531	301.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-2185346_7	1414720.CBYM010000002_gene574	286.0	0	Portal protein	N/A
Pfam	UHGV-2185346_7	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-2185346_7	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-2185346_7	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-2185346_7	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-2185346_8	phrog_991	221.8	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-2185346_8	887325.HMPREF0381_0396	148.0	1.67e-33	Phage-related minor tail protein	N/A
Pfam	UHGV-2185346_8	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-2185346_8	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-2185346_8	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-2185346_9	phrog_9	276.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-2185346_9	UniRef90_UPI001E157CF9	736.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-2185346_9	742738.HMPREF9460_01363	715.0	0	Phage Terminase	N/A
Pfam	UHGV-2185346_9	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-2185346_9	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-2185346_9	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2185346_9	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2185346_11	phrog_83	53.7	0.0000000000000038	terminase small subunit	head and packaging
UniRef90	UHGV-2185346_11	UniRef90_A0A150FR21	125.0	9.82e-34	Phage terminase, small subunit, P27 family	N/A
eggNOG-mapper	UHGV-2185346_11	796940.HMPREF9628_00148	125.0	1.13e-34	phage terminase small subunit	N/A
Pfam	UHGV-2185346_11	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-2185346_11	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-2185346_11	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-2185346_12	phrog_365	72.4	6e-21	tail protein	tail
UniRef90	UHGV-2185346_12	UniRef90_UPI0019D38528	89.7	3.21e-20	phage tail tube protein	N/A
eggNOG-mapper	UHGV-2185346_12	318464.IO99_13720	80.9	1.56e-17	Phage tail tube protein	N/A
Pfam	UHGV-2185346_12	PF09393	N/A	N/A	Phage tail tube protein	DUF2001
structural_annotation	UHGV-2185346_12	PF09393,TIGR02241,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-2185346_13	phrog_1480	192.7	0	tail sheath	tail
UniRef90	UHGV-2185346_13	UniRef90_A0A416DH06	155.0	1.90001e-40	Phage tail protein	N/A
eggNOG-mapper	UHGV-2185346_13	1203606.HMPREF1526_01344	147.0	4.72e-38	Phage tail sheath C-terminal domain	N/A
Pfam	UHGV-2185346_13	PF17482	N/A	N/A	Phage tail sheath C-terminal domain	Phage_sheath_1C
structural_annotation	UHGV-2185346_13	PF10758,COG3497	N/A	N/A	N/A	N/A
Pfam	UHGV-2185346_15	PF20765	N/A	N/A	N/A	DUF6838
UniRef90	UHGV-2185346_16	UniRef90_A0A6N9QGL6	61.2	0.000000000418	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-2185346_16	796940.HMPREF9628_00142	57.4	0.00000000213	Phage gp6-like head-tail connector protein	N/A
structural_annotation	UHGV-2185346_16	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-2185346_17	phrog_10	185.4	0	major head protein	head and packaging
UniRef90	UHGV-2185346_17	UniRef90_A0A168E1E5	316.0	0	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-2185346_17	742738.HMPREF9460_01366	303.0	0	Phage capsid family	N/A
Pfam	UHGV-2185346_17	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2185346_17	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2185346_17	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2185346_17	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-2185346_18	K06904	85.0	1.3e-24	N/A	N/A
PHROG	UHGV-2185346_18	phrog_80	92.9	5.3e-27	head maturation protease	head and packaging
UniRef90	UHGV-2185346_18	UniRef90_R6RAP9	135.0	9.19e-37	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-2185346_18	1414720.CBYM010000002_gene573	109.0	4.07e-27	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-2185346_18	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-2185346_18	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-2185346_18	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-2185346_18	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-2185346_19	phrog_4976	46.5	0.00000000000053	tail assembly chaperone	tail
structural_annotation	UHGV-2185346_19	PF08890,TIGR01674	N/A	N/A	N/A	N/A
Pfam	UHGV-2185346_20	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
PHROG	UHGV-2185346_23	phrog_599	41.2	0.000000000017	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-2185346_23	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
PHROG	UHGV-2185346_26	phrog_2514	72.0	4.2e-21	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2185346_26	290402.Cbei_3733	128.0	3.05e-32	DnaD domain protein	N/A
Pfam	UHGV-2185346_26	PF19481	N/A	N/A	N/A	DUF6017
COG	UHGV-2185346_26	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-2185346_26	PF19481,PF04492,TIGR01610,COG5529	N/A	N/A	N/A	N/A
KOfam	UHGV-2185346_28	K03111	122.9	4.1e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-2185346_28	phrog_44	133.3	1.7e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2185346_28	UniRef90_R6PGX1	157.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-2185346_28	1280680.AUJU01000003_gene3256	121.0	2.16e-33	Single-strand binding protein family	N/A
Pfam	UHGV-2185346_28	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-2185346_28	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-2185346_28	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-2185346_28	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-2185346_28	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-2185346_29	K07729	55.4	0.0000000000000015	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-2185346_29	phrog_3	46.4	0.0000000000016	transcriptional repressor	transcription regulation
UniRef90	UHGV-2185346_29	UniRef90_UPI001C0FC1AD	60.8	0.0000000000598	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2185346_29	1226325.HMPREF1548_03113	58.2	0.000000000348	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-2185346_29	retron_type_VI_hth_cluster2_1	49.7	0.000000000000095	N/A	Retron
Pfam	UHGV-2185346_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-2185346_29	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-2185346_38	K18830	45.6	0.00000000000072	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-2185346_38	phrog_8	40.7	0.000000000012	transcriptional regulator	transcription regulation
UniRef90	UHGV-2185346_38	UniRef90_T3DRJ9	115.0	1.57e-29	Helix-turn-helix family protein	N/A
eggNOG-mapper	UHGV-2185346_38	1151292.QEW_0314	115.0	2.63e-30	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-2185346_38	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-2185346_38	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2185346_38	PF12844,MF_02017,NF007257,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-2185346_39	phrog_1914	127.1	1.4e-37	N/A	unknown function
UniRef90	UHGV-2185346_39	UniRef90_A0A3D4VT22	160.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-2185346_39	445971.ANASTE_00176	102.0	1.53e-24	IrrE N-terminal-like domain	N/A
Pfam	UHGV-2185346_39	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-2185346_39	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-2185346_39	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-2185346_40	K07459	80.1	2.2e-23	ybjD; putative ATP-dependent endonuclease of the OLD family	N/A
PHROG	UHGV-2185346_40	phrog_14430	126.3	1.4e-39	N/A	unknown function
UniRef90	UHGV-2185346_40	UniRef90_A0A848CS63	271.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-2185346_40	397291.C804_01513	249.0	0	AAA ATPase domain	N/A
PADLOC	UHGV-2185346_40	AAA_15	67.6	6e-19	N/A	N/A
Pfam	UHGV-2185346_40	PF13175	N/A	N/A	AAA ATPase domain	AAA_15
COG	UHGV-2185346_40	COG3950	N/A	N/A	Predicted ATP-binding protein involved in virulence	N/A
structural_annotation	UHGV-2185346_40	PF11398,MF_00365,NF041760,COG4938	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2185346_41	622312.ROSEINA2194_00320	83.6	1.56e-17	N/A	N/A
PHROG	UHGV-2185346_42	phrog_29304	99.9	1.3e-29	N/A	unknown function
UniRef90	UHGV-2185346_42	UniRef90_UPI001C10E36D	120.0	2.34e-34	type II toxin-antitoxin system MqsA family antitoxin	N/A
eggNOG-mapper	UHGV-2185346_42	638302.HMPREF0908_0398	107.0	8.56e-30	N/A	N/A
NCBIFam	UHGV-2185346_42	TIGR03831.1	N/A	N/A	YgiT-type zinc finger protein	N/A
structural_annotation	UHGV-2185346_42	PF14122,TIGR03829	N/A	N/A	N/A	N/A
KOfam	UHGV-2185346_43	K14059	90.3	3.5e-26	int; integrase	N/A
PHROG	UHGV-2185346_43	phrog_1	123.5	2.2e-36	integrase	integration and excision
UniRef90	UHGV-2185346_43	UniRef90_R5RJ14	212.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-2185346_43	877414.ATWA01000109_gene1571	199.0	0	Phage integrase family	N/A
Pfam	UHGV-2185346_43	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2185346_43	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2185346_43	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A