UHGV-2207307 (vOTU-018523)

Viral Genome: UHGV-2207307

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-2207307
vOTU ID	vOTU-018523
Representative Genome?	Yes
Source	IMGVR4
Original Genome ID	3300030040\|Ga0134560_1000602
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	89.05 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	18
CheckV Host Markers	1
Recoded?	No

Viral Content
geNomad score	0.9791
Viral Hallmark Genes (geNomad)	10
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	57.74
Jumbo Phage?	No

Genome Content
Length (bps)	30,265
GC Content	59.99%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	52
CDS Density	92%
Average CDS Length (bps)	537.52
Total tRNA Genes	1
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 89.05)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-2207307_2	K01972	45.1	0.00000000000076	E6.5.1.2, ligA, ligB; DNA ligase (NAD+) [EC:6.5.1.2]	N/A
PHROG	UHGV-2207307_2	phrog_3989	313.3	0	N/A	unknown function
UniRef90	UHGV-2207307_2	UniRef90_UPI0003170388	428.0	0	BRCT domain-containing protein	N/A
eggNOG-mapper	UHGV-2207307_2	755731.Clo1100_2167	276.0	0	twin BRCT domain	N/A
Pfam	UHGV-2207307_2	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
COG	UHGV-2207307_2	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-2207307_2	PF00533,NF004844	N/A	N/A	N/A	N/A
KOfam	UHGV-2207307_3	K14059	167.6	0	int; integrase	N/A
PHROG	UHGV-2207307_3	phrog_1	148.1	6.86636e-44	integrase	integration and excision
UniRef90	UHGV-2207307_3	UniRef90_A0A174HFN7	350.0	0	Site-specific tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-2207307_3	742738.HMPREF9460_01344	208.0	0	Phage integrase family	N/A
Pfam	UHGV-2207307_3	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2207307_3	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2207307_3	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2207307_4	COG4451	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2207307_6	689781.AUJX01000002_gene3078	54.7	0.0000000156	sequence-specific DNA binding	N/A
COG	UHGV-2207307_6	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-2207307_6	NF040522,COG2944	N/A	N/A	N/A	N/A
KOfam	UHGV-2207307_7	K01447	62.8	6.7e-18	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-2207307_7	phrog_15001	172.2	0	endolysin	lysis
UniRef90	UHGV-2207307_7	UniRef90_A0A416QZJ4	303.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-2207307_7	1378168.N510_01539	278.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-2207307_7	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-2207307_7	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-2207307_7	PF01510,MF_04111,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-2207307_8	phrog_13256	58.8	5.3e-17	N/A	unknown function
eggNOG-mapper	UHGV-2207307_8	428125.CLOLEP_01907	72.8	3.69e-16	N/A	N/A
UniRef90	UHGV-2207307_9	UniRef90_A0A845RAD8	93.6	9.38e-23	LapA family protein	N/A
eggNOG-mapper	UHGV-2207307_9	1203606.HMPREF1526_00254	110.0	2.09e-30	N/A	N/A
PHROG	UHGV-2207307_10	phrog_1863	70.9	1.8e-21	N/A	unknown function
eggNOG-mapper	UHGV-2207307_10	1226322.HMPREF1545_04027	109.0	1.28e-30	N/A	N/A
PHROG	UHGV-2207307_11	phrog_37900	112.6	2.2e-33	N/A	unknown function
eggNOG-mapper	UHGV-2207307_11	552398.HMPREF0866_03098	99.4	2.66e-19	N/A	N/A
COG	UHGV-2207307_11	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
PHROG	UHGV-2207307_13	phrog_32744	543.7	0	N/A	unknown function
eggNOG-mapper	UHGV-2207307_13	1120998.AUFC01000030_gene2247	216.0	0	N/A	N/A
structural_annotation	UHGV-2207307_13	PF14594,PF21722,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-2207307_14	phrog_1194	54.0	0.0000000000000027	N/A	unknown function
eggNOG-mapper	UHGV-2207307_14	411902.CLOBOL_00125	109.0	4.03e-29	N/A	N/A
structural_annotation	UHGV-2207307_14	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-2207307_15	K10421	40.4	0.000000000014	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-2207307_15	phrog_23464	273.0	0	N/A	unknown function
UniRef90	UHGV-2207307_15	UniRef90_A0A318XNK8	199.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-2207307_15	926561.KB900622_gene636	219.0	0	phage tail tape measure protein	N/A
COG	UHGV-2207307_15	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-2207307_15	PF20155,TIGR02971,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-2207307_16	phrog_709	101.4	5.3e-30	N/A	unknown function
eggNOG-mapper	UHGV-2207307_16	1226322.HMPREF1545_00122	149.0	5.60519e-45	N/A	N/A
structural_annotation	UHGV-2207307_16	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-2207307_17	phrog_88	172.6	0	major tail protein	tail
UniRef90	UHGV-2207307_17	UniRef90_UPI001D02B2B9	273.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-2207307_17	1226322.HMPREF1545_00121	254.0	0	phage major tail protein, phi13 family	N/A
Pfam	UHGV-2207307_17	PF06488	N/A	N/A	Phage tail tube protein	L_lac_phage_MSP
NCBIFam	UHGV-2207307_17	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-2207307_17	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-2207307_18	phrog_78	52.8	0.0000000000000076	tail terminator	connector
UniRef90	UHGV-2207307_18	UniRef90_A6XMK2	102.0	4.44e-26	Aminopeptidase	N/A
eggNOG-mapper	UHGV-2207307_18	396034.A6XMK2_9CAUD	102.0	7.45e-27	aminopeptidase activity	N/A
structural_annotation	UHGV-2207307_18	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-2207307_19	phrog_5	54.3	0.0000000000000035	tail completion or Neck1 protein	connector
UniRef90	UHGV-2207307_19	UniRef90_UPI00047AA654	89.7	1.36e-20	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-2207307_19	1120933.ATUY01000002_gene171	89.7	2.46e-21	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-2207307_19	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-2207307_19	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-2207307_20	phrog_19734	63.0	5.4e-18	N/A	unknown function
eggNOG-mapper	UHGV-2207307_20	999413.HMPREF1094_02006	51.2	0.00000104	N/A	N/A
structural_annotation	UHGV-2207307_20	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2207307_21	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-2207307_22	phrog_10	183.7	0	major head protein	head and packaging
UniRef90	UHGV-2207307_22	UniRef90_UPI001E346EE7	552.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-2207307_22	396034.A6XMJ6_9CAUD	408.0	0	N-acetylmuramoyl-L-alanine amidase activity	N/A
Pfam	UHGV-2207307_22	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2207307_22	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-2207307_22	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-2207307_23	K06904	168.7	0	N/A	N/A
PHROG	UHGV-2207307_23	phrog_80	188.7	0	head maturation protease	head and packaging
UniRef90	UHGV-2207307_23	UniRef90_A0A358PQU8	278.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-2207307_23	398512.JQKC01000009_gene450	257.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-2207307_23	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-2207307_23	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-2207307_23	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-2207307_23	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-2207307_24	phrog_12	188.7	0	portal protein	head and packaging
UniRef90	UHGV-2207307_24	UniRef90_A0A0D8IVL0	518.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-2207307_24	396034.A6XMJ5_9CAUD	490.0	0	Phage portal protein	N/A
Pfam	UHGV-2207307_24	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-2207307_24	TIGR01537.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-2207307_24	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-2207307_25	phrog_9	319.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-2207307_25	UniRef90_UPI001A9AAB24	970.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-2207307_25	1226322.HMPREF1545_00113	906.0	0	Phage Terminase	N/A
Pfam	UHGV-2207307_25	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-2207307_25	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-2207307_25	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-2207307_25	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-2207307_26	phrog_361	97.8	8.5e-29	terminase small subunit	head and packaging
UniRef90	UHGV-2207307_26	UniRef90_A0A562JDF4	106.0	1.72e-27	Phage terminase small subunit	N/A
eggNOG-mapper	UHGV-2207307_26	1226322.HMPREF1545_00112	158.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-2207307_26	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-2207307_26	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-2207307_26	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-2207307_27	K07451	51.8	0.000000000000015	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-2207307_27	phrog_119	82.9	3.9e-24	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2207307_27	UniRef90_A0A806LMB3	125.0	1.9e-35	HNH endonuclease	N/A
eggNOG-mapper	UHGV-2207307_27	1145276.T479_20000	125.0	3.18e-36	HNH nucleases	N/A
Pfam	UHGV-2207307_27	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-2207307_27	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-2207307_28	phrog_36	106.1	3.1e-31	transcriptional regulator	transcription regulation
UniRef90	UHGV-2207307_28	UniRef90_A0A3D3FGT2	100.0	2.5e-24	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-2207307_28	203119.Cthe_1732	79.3	4.3e-17	sigma factor activity	N/A
Pfam	UHGV-2207307_28	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-2207307_28	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-2207307_28	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-2207307_29	phrog_27610	66.5	2.3e-19	N/A	unknown function
structural_annotation	UHGV-2207307_29	PF09465,COG5475	N/A	N/A	N/A	N/A
PHROG	UHGV-2207307_30	phrog_3584	223.5	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2207307_30	1519439.JPJG01000060_gene1883	311.0	0	N/A	N/A
structural_annotation	UHGV-2207307_30	PF21578,NF033538	N/A	N/A	N/A	N/A
KOfam	UHGV-2207307_32	K07738	41.9	0.000000000012	nrdR; transcriptional repressor NrdR	N/A
Pfam	UHGV-2207307_32	PF01096	N/A	N/A	Transcription factor S-II (TFIIS)	TFIIS_C
COG	UHGV-2207307_32	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
PHROG	UHGV-2207307_34	phrog_5781	108.9	4.2e-32	N/A	unknown function
UniRef90	UHGV-2207307_34	UniRef90_A0A2V2GDQ1	106.0	7.22e-28	Nucleoside 2-deoxyribosyltransferase	N/A
eggNOG-mapper	UHGV-2207307_34	573061.Clocel_3558	97.4	5.04e-25	N/A	N/A
Pfam	UHGV-2207307_34	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-2207307_34	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-2207307_34	PF14359,MF_03036,TIGR02133,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-2207307_35	phrog_111	143.3	1.10002e-42	DNA methyltransferase	other
UniRef90	UHGV-2207307_35	UniRef90_A0A6N9P5P7	206.0	0	Adenine methyltransferase	N/A
eggNOG-mapper	UHGV-2207307_35	445972.ANACOL_03344	187.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-2207307_35	oMTase_00015	129.6	2.3e-38	orphan methyltransferase	RM
Pfam	UHGV-2207307_35	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-2207307_35	PF05869,TIGR01712,COG0338	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2207307_36	PF18300,TIGR02228	N/A	N/A	N/A	N/A
Pfam	UHGV-2207307_37	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-2207307_37	NF041588	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2207307_38	1232449.BAHV02000018_gene1537	136.0	2.43e-39	N/A	N/A
KOfam	UHGV-2207307_40	K03111	121.4	1.2e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-2207307_40	phrog_44	128.3	5.6e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2207307_40	UniRef90_A0A3D3T9L5	154.0	1.4013e-45	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-2207307_40	1226322.HMPREF1545_04080	145.0	1.02995e-42	Single-strand binding protein family	N/A
Pfam	UHGV-2207307_40	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-2207307_40	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-2207307_40	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-2207307_40	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-2207307_40	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-2207307_42	phrog_3777	56.5	3e-16	N/A	unknown function
UniRef90	UHGV-2207307_42	UniRef90_UPI00130E0E41	84.3	1.31e-18	N/A	N/A
Pfam	UHGV-2207307_42	PF12957	N/A	N/A	N/A	DUF3846
COG	UHGV-2207307_42	COG4734	N/A	N/A	Antirestriction protein ArdA	N/A
structural_annotation	UHGV-2207307_42	PF12957	N/A	N/A	N/A	N/A
PHROG	UHGV-2207307_43	phrog_7566	93.2	1.5e-27	N/A	unknown function
UniRef90	UHGV-2207307_43	UniRef90_UPI00137AF749	53.5	0.000000682	phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-2207307_43	693746.OBV_24070	133.0	8.65e-39	N/A	N/A
PHROG	UHGV-2207307_45	phrog_11564	122.9	7.4e-37	DNA methyltransferase	other
UniRef90	UHGV-2207307_45	UniRef90_UPI000EF0315D	283.0	0	SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-2207307_45	563008.HMPREF0665_02421	241.0	0	Methyltransferase domain	N/A
PADLOC	UHGV-2207307_45	oMTase_00019	140.3	1.79366e-43	orphan methyltransferase	RM
Pfam	UHGV-2207307_45	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-2207307_45	COG1041	N/A	N/A	tRNA G10 N-methylase Trm11	N/A
structural_annotation	UHGV-2207307_45	PF05148,MF_01057,NF033398,COG1041	N/A	N/A	N/A	N/A
Pfam	UHGV-2207307_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-2207307_48	PF13560,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-2207307_50	phrog_18248	57.3	1.8e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-2207307_50	UniRef90_A0A173WPH2	73.9	0.00000000000000135	Helix-turn-helix domain	N/A
eggNOG-mapper	UHGV-2207307_50	696281.Desru_1067	71.6	0.0000000000000305	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2207307_50	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-2207307_50	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-2207307_51	phrog_8	59.1	1.1e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-2207307_51	UniRef90_A0A265Q2M5	74.3	0.00000000000000667	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-2207307_51	941770.GL622181_gene424	65.1	0.00000000000358	Transcriptional regulator, Cro CI family	N/A
Pfam	UHGV-2207307_51	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2207307_51	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2207307_51	PF12844,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-2207307_52	phrog_5823	40.7	0.000000000022	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-2207307_52	1123075.AUDP01000024_gene1080	52.8	0.00000901	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-2207307_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2207307_52	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-2207307_52	PF13443,TIGR03070,COG3655	N/A	N/A	N/A	N/A