UHGV-2225355 (vOTU-134846)

Viral Genome: UHGV-2225355

Genome Information

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Overview
UHGV ID	UHGV-2225355
vOTU ID	vOTU-134846
Representative Genome?	Yes
Source	IMGVR4
Original Genome ID	7000000297\|SRS056259_LANL_scaffold_4132\|provirus_98_39104
Associated Biosample	N/A
Viral Genome Confidence	Confident

Quality Assessment
CheckV Method	AAI-based
CheckV Completeness	62.36 (Medium-quality)
Trimmed?	No
CheckV Viral Markers	8
CheckV Host Markers	2
Recoded?	No

Viral Content
geNomad score	0.9757
Viral Hallmark Genes (geNomad)	6
Plasmid Hallmark Genes (geNomad)	0
ViralVerify Prediction	Virus
ViralVerify Score	16.82
Jumbo Phage?	No

Genome Content
Length (bps)	39,007
GC Content	39.45%
Genetic Code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS Genes	60
CDS Density	93%
Average CDS Length (bps)	601.70
Total tRNA Genes	0
Suppressor tRNA Genes	0

Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 62.36)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-2225355_4	411901.BACCAC_01173	118.0	3.47e-32	N/A	N/A
PHROG	UHGV-2225355_5	phrog_12005	65.3	6.5e-19	N/A	unknown function
eggNOG-mapper	UHGV-2225355_6	657309.BXY_08540	77.0	1.26e-17	N/A	N/A
PHROG	UHGV-2225355_7	phrog_874	96.5	4.8e-29	N/A	unknown function
eggNOG-mapper	UHGV-2225355_7	1121098.HMPREF1534_01095	171.0	0	N/A	N/A
structural_annotation	UHGV-2225355_7	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
PHROG	UHGV-2225355_8	phrog_8684	91.6	1.2e-28	N/A	unknown function
UniRef90	UHGV-2225355_8	UniRef90_UPI001C016A5B	263.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-2225355_8	762968.HMPREF9441_00543	138.0	6.27e-40	YopX protein	N/A
Pfam	UHGV-2225355_8	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-2225355_8	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-2225355_8	PF09643,TIGR01671	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2225355_9	PF08928	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2225355_11	PF02699,MF_01354,NF005100,COG5475	N/A	N/A	N/A	N/A
UniRef90	UHGV-2225355_12	UniRef90_A0A415IS58	84.7	1.89e-18	LacI family DNA-binding transcriptional regulator	N/A
structural_annotation	UHGV-2225355_12	PF13384,TIGR04381	N/A	N/A	N/A	N/A
PHROG	UHGV-2225355_14	phrog_35041	88.9	3e-26	N/A	unknown function
PHROG	UHGV-2225355_15	phrog_1373	58.0	1.8e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-2225355_15	UniRef90_UPI001899E1E5	170.0	0	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-2225355_15	547042.BACCOPRO_00729	81.3	5.13e-19	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-2225355_15	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2225355_15	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-2225355_16	869213.JCM21142_114629	117.0	3.88e-31	N/A	N/A
UniRef90	UHGV-2225355_17	UniRef90_F3QSP6	217.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-2225355_17	762982.HMPREF9442_01206	217.0	0	N/A	N/A
PHROG	UHGV-2225355_18	phrog_38431	247.5	0	N/A	unknown function
UniRef90	UHGV-2225355_18	UniRef90_R5U340	226.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-2225355_18	762982.HMPREF9442_01205	221.0	0	N/A	N/A
PHROG	UHGV-2225355_19	phrog_34053	120.4	1.6e-36	N/A	unknown function
PHROG	UHGV-2225355_20	phrog_28898	300.7	0	N/A	unknown function
UniRef90	UHGV-2225355_20	UniRef90_R5UN07	175.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-2225355_20	762968.HMPREF9441_00553	263.0	0	N/A	N/A
structural_annotation	UHGV-2225355_20	PF10781	N/A	N/A	N/A	N/A
PHROG	UHGV-2225355_21	phrog_31654	273.7	0	N/A	unknown function
eggNOG-mapper	UHGV-2225355_21	762968.HMPREF9441_00554	242.0	0	N/A	N/A
PHROG	UHGV-2225355_22	phrog_16490	373.9	0	N/A	unknown function
UniRef90	UHGV-2225355_22	UniRef90_A0A7M1RSH1	294.0	0	Outer capsid protein/viral fiber	N/A
eggNOG-mapper	UHGV-2225355_22	762968.HMPREF9441_00555	473.0	0	N/A	N/A
UniRef90	UHGV-2225355_23	UniRef90_A0A8D9UI10	124.0	3.01e-35	Chromosomal replication initiator protein	N/A
eggNOG-mapper	UHGV-2225355_23	762982.HMPREF9442_01200	108.0	8.85e-30	Bacterial dnaA protein helix-turn-helix	N/A
structural_annotation	UHGV-2225355_23	PF08299,NF004688	N/A	N/A	N/A	N/A
PHROG	UHGV-2225355_24	phrog_26448	51.6	0.0000000000000076	N/A	unknown function
eggNOG-mapper	UHGV-2225355_24	762984.HMPREF9445_00190	266.0	0	N/A	N/A
Pfam	UHGV-2225355_24	PF20647	N/A	N/A	N/A	DUF6808
structural_annotation	UHGV-2225355_24	PF20647	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2225355_30	PF14607,MF_01372,NF038393	N/A	N/A	N/A	N/A
KOfam	UHGV-2225355_31	K01448	120.0	2.5e-35	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-2225355_31	phrog_435	172.0	0	endolysin	lysis
UniRef90	UHGV-2225355_31	UniRef90_UPI0018997145	382.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-2225355_31	657309.BXY_08040	325.0	0	COG NOG32858 non supervised orthologous group	N/A
Pfam	UHGV-2225355_31	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-2225355_31	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-2225355_31	PF01520,TIGR02883,COG0860	N/A	N/A	N/A	N/A
UniRef90	UHGV-2225355_33	UniRef90_UPI000E53ECB8	258.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-2225355_33	1121100.JCM6294_559	151.0	7.00649e-45	N/A	N/A
Pfam	UHGV-2225355_33	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
structural_annotation	UHGV-2225355_33	PF05105,NF035928,COG4824	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2225355_34	483215.BACFIN_08291	79.0	8.64e-17	N/A	N/A
PHROG	UHGV-2225355_36	phrog_13481	40.9	0.00000000002	tail fiber protein	tail
eggNOG-mapper	UHGV-2225355_37	742727.HMPREF9447_04856	86.3	6.53e-21	N/A	N/A
PHROG	UHGV-2225355_38	phrog_38044	233.9	0	N/A	unknown function
UniRef90	UHGV-2225355_38	UniRef90_UPI001E5F740B	178.0	6.78228e-43	N/A	N/A
eggNOG-mapper	UHGV-2225355_38	1236514.BAKL01000085_gene4861	254.0	0	N/A	N/A
PHROG	UHGV-2225355_39	phrog_26568	204.2	0	N/A	unknown function
eggNOG-mapper	UHGV-2225355_39	1122971.BAME01000119_gene6178	236.0	0	N/A	N/A
structural_annotation	UHGV-2225355_39	PF02927,PF19266	N/A	N/A	N/A	N/A
PHROG	UHGV-2225355_40	phrog_22157	589.9	0	N/A	unknown function
eggNOG-mapper	UHGV-2225355_40	411476.BACOVA_03941	439.0	0	N/A	N/A
structural_annotation	UHGV-2225355_40	PF05629,PF17642,PF06605,TIGR01646,COG3157	N/A	N/A	N/A	N/A
PHROG	UHGV-2225355_41	phrog_26233	49.4	0.000000000000057	N/A	unknown function
eggNOG-mapper	UHGV-2225355_41	411476.BACOVA_03937	65.1	0.000000000188	N/A	N/A
PHROG	UHGV-2225355_42	phrog_26705	306.2	0	N/A	unknown function
UniRef90	UHGV-2225355_42	UniRef90_A0A414Q7X1	350.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-2225355_42	1122971.BAME01000119_gene6173	472.0	0	Phage-related minor tail protein	N/A
COG	UHGV-2225355_42	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
KOfam	UHGV-2225355_43	K19159	87.2	2.1e-25	yefM; antitoxin YefM	N/A
PHROG	UHGV-2225355_43	phrog_10078	82.6	2.7e-24	N/A	unknown function
UniRef90	UHGV-2225355_43	UniRef90_B0NMA5	192.0	0	Antitoxin	N/A
eggNOG-mapper	UHGV-2225355_43	449673.BACSTE_00563	192.0	0	Antitoxin component of a toxin-antitoxin (TA) module	N/A
Pfam	UHGV-2225355_43	PF02604	N/A	N/A	Antitoxin Phd_YefM, type II toxin-antitoxin system	PhdYeFM_antitox
NCBIFam	UHGV-2225355_43	TIGR01552.1	N/A	N/A	type II toxin-antitoxin system prevent-host-death family antitoxin	N/A
COG	UHGV-2225355_43	COG2161	N/A	N/A	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	N/A
KOfam	UHGV-2225355_44	K19158	114.0	1e-33	yoeB; toxin YoeB [EC:3.1.-.-]	N/A
PHROG	UHGV-2225355_44	phrog_1213	50.8	0.000000000000036	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2225355_44	UniRef90_B0NMA6	185.0	0	Putative mRNA interferase YoeB	N/A
eggNOG-mapper	UHGV-2225355_44	449673.BACSTE_00564	185.0	0	addiction module toxin, Txe YoeB family	N/A
Pfam	UHGV-2225355_44	PF06769	N/A	N/A	YoeB-like toxin of bacterial type II toxin-antitoxin system	YoeB_toxin
NCBIFam	UHGV-2225355_44	TIGR02116.1	N/A	N/A	Txe/YoeB family addiction module toxin	N/A
COG	UHGV-2225355_44	COG4115	N/A	N/A	Toxin component of the Txe-Axe toxin-antitoxin module, Txe/YoeB family	N/A
structural_annotation	UHGV-2225355_44	PF06769,TIGR02116,COG4115	N/A	N/A	N/A	N/A
UniRef90	UHGV-2225355_45	UniRef90_A0A139LPL1	174.0	0	HTH_17 domain-containing protein	N/A
eggNOG-mapper	UHGV-2225355_45	693979.Bache_0303	79.0	4.51e-18	N/A	N/A
Pfam	UHGV-2225355_45	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
COG	UHGV-2225355_45	COG2452	N/A	N/A	Predicted site-specific integrase-resolvase	N/A
structural_annotation	UHGV-2225355_45	PF12728,MF_01155,NF033787,COG3311	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2225355_47	449673.BACSTE_00845	108.0	5.08e-30	N/A	N/A
PHROG	UHGV-2225355_48	phrog_26299	45.2	0.0000000000011	N/A	unknown function
eggNOG-mapper	UHGV-2225355_48	411476.BACOVA_03935	51.6	0.0000000392	N/A	N/A
PHROG	UHGV-2225355_49	phrog_6195	66.1	4.6e-19	tail protein	tail
UniRef90	UHGV-2225355_49	UniRef90_A0A374UT65	315.0	0	ABC transporter	N/A
eggNOG-mapper	UHGV-2225355_49	449673.BACSTE_00574	347.0	0	N/A	N/A
PHROG	UHGV-2225355_50	phrog_25857	44.2	0.000000000002	N/A	unknown function
PHROG	UHGV-2225355_51	phrog_24272	221.7	0	N/A	unknown function
eggNOG-mapper	UHGV-2225355_51	449673.BACSTE_00576	552.0	0	N/A	N/A
structural_annotation	UHGV-2225355_51	PF08813,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-2225355_52	phrog_23418	108.9	3.9e-32	N/A	unknown function
eggNOG-mapper	UHGV-2225355_52	449673.BACSTE_00577	349.0	0	N/A	N/A
eggNOG-mapper	UHGV-2225355_53	449673.BACSTE_00578	333.0	0	N/A	N/A
structural_annotation	UHGV-2225355_53	PF20459	N/A	N/A	N/A	N/A
PHROG	UHGV-2225355_55	phrog_10	144.3	8.99634e-43	major head protein	head and packaging
UniRef90	UHGV-2225355_55	UniRef90_UPI001106E187	720.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-2225355_55	449673.BACSTE_00580	843.0	0	Phage capsid family	N/A
Pfam	UHGV-2225355_55	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2225355_55	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2225355_55	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2225355_55	PF05065,MF_04113,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-2225355_56	K06904	150.3	1.54143e-44	N/A	N/A
PHROG	UHGV-2225355_56	phrog_80	138.9	4.90006e-41	head maturation protease	head and packaging
UniRef90	UHGV-2225355_56	UniRef90_B0NM79	502.0	0	Phage prohead protease, HK97 family	N/A
eggNOG-mapper	UHGV-2225355_56	449673.BACSTE_00581	502.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-2225355_56	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-2225355_56	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-2225355_56	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-2225355_56	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-2225355_57	phrog_12	89.9	1.9e-26	portal protein	head and packaging
UniRef90	UHGV-2225355_57	UniRef90_UPI001485B311	669.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-2225355_57	449673.BACSTE_00582	853.0	0	Phage portal protein	N/A
Pfam	UHGV-2225355_57	PF04860	N/A	N/A	Phage portal protein	Phage_portal
structural_annotation	UHGV-2225355_57	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-2225355_58	phrog_38	307.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-2225355_58	UniRef90_UPI0011064D5D	983.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-2225355_58	449673.BACSTE_00583	1187.0	0	domain protein	N/A
NCBIFam	UHGV-2225355_58	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-2225355_58	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2225355_58	PF17289,PF05876,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
KOfam	UHGV-2225355_59	K07474	95.0	1.4e-27	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-2225355_59	phrog_51	94.7	9.7e-28	terminase small subunit	head and packaging
UniRef90	UHGV-2225355_59	UniRef90_B0NM82	340.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-2225355_59	449673.BACSTE_00584	340.0	0	Terminase small subunit	N/A
Pfam	UHGV-2225355_59	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-2225355_59	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-2225355_59	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-2225355_60	K04763	74.3	1.8e-21	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-2225355_60	phrog_1	112.2	5.8e-33	integrase	integration and excision
UniRef90	UHGV-2225355_60	UniRef90_B0NM83	798.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-2225355_60	449673.BACSTE_00585	798.0	0	Phage integrase SAM-like domain	N/A
Pfam	UHGV-2225355_60	PF17293	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_5
Pfam	UHGV-2225355_60	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
COG	UHGV-2225355_60	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2225355_60	PF17293,PF13102,PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A