Viral OTU vOTU-003274

vOTU: vOTU-003274

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-003274
Number of Genomes	5
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00291 → vSUBFAM-01665 → vGENUS-02994 → vSUBGEN-02135 → vOTU-003274
Host Lineage	Bacteria → Firmicutes_A → Clostridia → Peptostreptococcales → Peptostreptococcaceae → Romboutsia → Romboutsia timonensis
Viral Lifestyle	lytic

Representative Genome
Genome ID	UHGV-0177503
Biosample ID	SAMN09781739
Length	49,852 bps
CheckV Completeness	100.00% (Complete)
CDS Count	57
CDS Density	90.82%
tRNA Count	1
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0177503_1	phrog_3287	48.6	0.0000000000000062	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0177503_1	935837.JAEK01000054_gene1472	59.7	0.00000118	N/A	N/A
KOfam	UHGV-0177503_2	K10062	72.5	4.4e-21	COLEC12; collectin sub-family member 12	N/A
PHROG	UHGV-0177503_2	phrog_6782	174.6	0	tail fiber protein	tail
eggNOG-mapper	UHGV-0177503_2	545697.HMPREF0216_02867	82.4	0.00000000000066	domain, Protein	N/A
Pfam	UHGV-0177503_2	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0177503_2	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
structural_annotation	UHGV-0177503_2	PF10651	N/A	N/A	N/A	N/A
COG	UHGV-0177503_4	COG3953	N/A	N/A	SLT domain protein	N/A
UniRef90	UHGV-0177503_5	UniRef90_UPI0005E01B60	54.7	0.0000000167	BhlA/UviB family holin-like peptide	N/A
Pfam	UHGV-0177503_5	PF10960	N/A	N/A	BhlA holin family	Holin_BhlA
PHROG	UHGV-0177503_6	phrog_16267	154.9	0	N/A	unknown function
UniRef90	UHGV-0177503_6	UniRef90_A0A0A7FW02	113.0	1.43e-21	KID repeat family protein	N/A
eggNOG-mapper	UHGV-0177503_6	1347392.CCEZ01000045_gene1	151.0	2.47e-34	Phage minor structural protein	N/A
Pfam	UHGV-0177503_6	PF02018	N/A	N/A	Carbohydrate binding domain	CBM_4_9
COG	UHGV-0177503_6	COG4926	N/A	N/A	Phage-related protein	N/A
KOfam	UHGV-0177503_7	K01448	138.1	8.19998e-41	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0177503_7	phrog_435	192.2	0	endolysin	lysis
UniRef90	UHGV-0177503_7	UniRef90_A0A6L5Y0L2	179.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0177503_7	1280689.AUJC01000007_gene3302	165.0	0	Ami_3	N/A
Pfam	UHGV-0177503_7	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0177503_7	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0177503_7	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
KOfam	UHGV-0177503_8	K01160	65.4	1.5e-18	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0177503_8	phrog_34	54.0	0.0000000000000031	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0177503_8	UniRef90_C9KJA0	84.3	2.59e-18	Crossover junction endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0177503_8	1157490.EL26_23950	84.7	3.41e-19	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0177503_8	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0177503_8	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
PHROG	UHGV-0177503_10	phrog_173	112.7	3.7e-33	nucleoside triphosphate pyrophosphohydrolase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0177503_10	UniRef90_T4V7V8	82.4	1.04e-16	dUTPase family protein	N/A
eggNOG-mapper	UHGV-0177503_10	512564.MCRO_0333	73.6	0.0000000000000432	protein conserved in bacteria	N/A
Pfam	UHGV-0177503_10	PF08761	N/A	N/A	dUTPase	dUTPase_2
COG	UHGV-0177503_10	COG4508	N/A	N/A	Dimeric dUTPase, all-alpha-NTP-PPase (MazG) superfamily	N/A
structural_annotation	UHGV-0177503_10	PF08761,COG4508	N/A	N/A	N/A	N/A
KOfam	UHGV-0177503_12	K01491	301.8	0	folD; methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]	N/A
PHROG	UHGV-0177503_12	phrog_7320	236.1	0	tetrahydrofolate dehydrogenase and cyclohydrolase	other
UniRef90	UHGV-0177503_12	UniRef90_A0A8J8GAS9	213.0	0	Bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	N/A
eggNOG-mapper	UHGV-0177503_12	621372.ACIH01000183_gene3234	210.0	0	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate	N/A
Pfam	UHGV-0177503_12	PF00763	N/A	N/A	Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain	THF_DHG_CYH
Pfam	UHGV-0177503_12	PF02882	N/A	N/A	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain	THF_DHG_CYH_C
COG	UHGV-0177503_12	COG0190	N/A	N/A	5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase	N/A
HAMAP	UHGV-0177503_12	MF_01576	N/A	N/A	Bifunctional protein FolD [folD]	N/A
structural_annotation	UHGV-0177503_12	PF02882,PF00763,MF_01576,NF010775,COG0190	N/A	N/A	N/A	N/A
Pfam	UHGV-0177503_13	PF10957	N/A	N/A	Sporulation protein Cse60	Spore_Cse60
KOfam	UHGV-0177503_14	K07465	66.9	2.7e-19	K07465; putative RecB family exonuclease	N/A
PHROG	UHGV-0177503_14	phrog_69	76.8	3.7e-22	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0177503_14	UniRef90_UPI0010488E2D	180.0	0	PD-(D/E)XK nuclease family protein	N/A
eggNOG-mapper	UHGV-0177503_14	406327.Mevan_0085	61.2	0.000000201	PFAM UvrD REP helicase	N/A
Pfam	UHGV-0177503_14	PF12705	N/A	N/A	PD-(D/E)XK nuclease superfamily	PDDEXK_1
COG	UHGV-0177503_14	COG0210	N/A	N/A	Superfamily I DNA or RNA helicase	N/A
PHROG	UHGV-0177503_15	phrog_1271	51.1	0.000000000000002	HNH endonuclease	DNA, RNA and nucleotide metabolism
Pfam	UHGV-0177503_15	PF06467	N/A	N/A	MYM-type Zinc finger with FCS sequence motif	zf-FCS
structural_annotation	UHGV-0177503_15	PF09889,PF10013,COG3024,COG4338	N/A	N/A	N/A	N/A
KOfam	UHGV-0177503_17	K02337	1021.0	0	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	N/A
PHROG	UHGV-0177503_17	phrog_405	831.3	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0177503_17	UniRef90_A0A8A0RPK1	629.0	0	DNA polymerase III subunit alpha	N/A
eggNOG-mapper	UHGV-0177503_17	1158318.ATXC01000002_gene1498	609.0	0	TIGRFAM DNA polymerase III, alpha subunit	N/A
Pfam	UHGV-0177503_17	PF02811	N/A	N/A	PHP domain	PHP
Pfam	UHGV-0177503_17	PF07733	N/A	N/A	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
Pfam	UHGV-0177503_17	PF17657	N/A	N/A	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
Pfam	UHGV-0177503_17	PF14579	N/A	N/A	Helix-hairpin-helix motif	HHH_6
NCBIFam	UHGV-0177503_17	TIGR00594.1	N/A	N/A	DNA polymerase III subunit alpha	N/A
COG	UHGV-0177503_17	COG0587	N/A	N/A	DNA polymerase III, alpha subunit	N/A
structural_annotation	UHGV-0177503_17	PF07733,PF02811,PF17657,PF14579,MF_01902,TIGR00594,COG0587	N/A	N/A	N/A	N/A
PHROG	UHGV-0177503_21	phrog_236	111.7	1.4e-32	nucleotide kinase	other
UniRef90	UHGV-0177503_21	UniRef90_A0A6J5KTZ9	88.2	3.76e-20	SaV-like	N/A
eggNOG-mapper	UHGV-0177503_21	546273.VEIDISOL_00707	86.3	1.19e-19	N/A	N/A
Pfam	UHGV-0177503_21	PF11753	N/A	N/A	N/A	DUF3310
KOfam	UHGV-0177503_22	K02316	155.1	0	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0177503_22	phrog_47	179.5	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0177503_22	UniRef90_UPI0010539013	288.0	0	toprim domain-containing protein	N/A
eggNOG-mapper	UHGV-0177503_22	1158604.I591_01194	124.0	6.96e-29	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	N/A
Pfam	UHGV-0177503_22	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
Pfam	UHGV-0177503_22	PF13155	N/A	N/A	Toprim-like	Toprim_2
COG	UHGV-0177503_22	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0177503_22	PF01807,PF13155,MF_00974,TIGR01391,COG0358	N/A	N/A	N/A	N/A
KOfam	UHGV-0177503_24	K02314	202.5	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0177503_24	phrog_19	203.9	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0177503_24	UniRef90_UPI000EBD570D	456.0	0	replicative DNA helicase	N/A
eggNOG-mapper	UHGV-0177503_24	1273742.M1HNB2_9CAUD	266.0	0	DNA helicase activity	N/A
Pfam	UHGV-0177503_24	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0177503_24	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
structural_annotation	UHGV-0177503_24	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0177503_25	phrog_6254	104.2	1.4e-30	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0177503_25	UniRef90_UPI000BF65752	155.0	1.54143e-44	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0177503_25	1134413.ANNK01000120_gene2048	122.0	3.33e-33	response regulator	N/A
PADLOC	UHGV-0177503_25	HEase_00033	47.8	0.00000000000046	homing endonuclease	RM
Pfam	UHGV-0177503_25	PF13392	N/A	N/A	HNH endonuclease	HNH_3
COG	UHGV-0177503_25	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
structural_annotation	UHGV-0177503_25	PF13392	N/A	N/A	N/A	N/A
Pfam	UHGV-0177503_31	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
KOfam	UHGV-0177503_32	K21029	80.8	1.6e-23	moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]	N/A
PHROG	UHGV-0177503_32	phrog_15670	82.9	4.1e-24	N/A	unknown function
UniRef90	UHGV-0177503_32	UniRef90_UPI0010518C12	185.0	0	ThiF family adenylyltransferase	N/A
eggNOG-mapper	UHGV-0177503_32	1033733.CAEK01000015_gene824	62.0	0.00000000539	Thiamine biosynthesis protein ThiF	N/A
PADLOC	UHGV-0177503_32	E1E2_00006	41.1	0.00000000002	E1-E2	CBASS
Pfam	UHGV-0177503_32	PF00899	N/A	N/A	ThiF family	ThiF
COG	UHGV-0177503_32	COG0476	N/A	N/A	Molybdopterin or thiamine biosynthesis adenylyltransferase	N/A
structural_annotation	UHGV-0177503_32	PF00899,MF_03049,NF004281,COG0476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0177503_39	PF14445,PF02318	N/A	N/A	N/A	N/A
PHROG	UHGV-0177503_42	phrog_59	131.2	4.6e-39	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0177503_42	UniRef90_A0A2H4J8J0	108.0	6.68e-27	Putative HNH endonuclease	N/A
eggNOG-mapper	UHGV-0177503_42	212035.YL245_MIMIV	100.0	2.37e-23	HNH endonuclease	N/A
PADLOC	UHGV-0177503_42	HEase_00016	81.5	2.3e-23	homing endonuclease	RM
Pfam	UHGV-0177503_42	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0177503_42	PF07463,PF12286	N/A	N/A	N/A	N/A
PHROG	UHGV-0177503_49	phrog_2538	51.4	0.000000000000018	terminase small subunit	head and packaging
UniRef90	UHGV-0177503_49	UniRef90_UPI0010482774	139.0	2.8e-39	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0177503_49	279808.SH2359	50.1	0.00000745	N/A	N/A
KOfam	UHGV-0177503_50	K21523	63.5	7.8e-31	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-0177503_50	phrog_38407	151.8	0	N/A	unknown function
UniRef90	UHGV-0177503_50	UniRef90_UPI000E6C46F7	670.0	0	DNA packaging protein	N/A
eggNOG-mapper	UHGV-0177503_50	935837.JAEK01000054_gene1465	494.0	0	Mu-like prophage FluMu protein gp28	N/A
COG	UHGV-0177503_50	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-0177503_50	PF03237,PF17289,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
Pfam	UHGV-0177503_51	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0177503_51	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
PHROG	UHGV-0177503_52	phrog_156	212.2	0	portal protein	head and packaging
UniRef90	UHGV-0177503_52	UniRef90_A0A1V5WPT3	157.0	3e-37	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-0177503_52	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0177503_54	phrog_371	126.5	2.2e-37	major head protein	head and packaging
UniRef90	UHGV-0177503_54	UniRef90_UPI000E6BE03E	409.0	0	Mu-like prophage major head subunit gpT family protein	N/A
eggNOG-mapper	UHGV-0177503_54	645991.Sgly_0540	79.3	0.0000000000000599	COGs COG4397 Mu-like prophage major head subunit gpT	N/A
Pfam	UHGV-0177503_54	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
COG	UHGV-0177503_54	COG4397	N/A	N/A	Mu-like prophage major head subunit gpT	N/A
structural_annotation	UHGV-0177503_54	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0177503	Yes	49,852	32	100	1
UHGV-0199672	No	49,852	32	100	1
UHGV-0174179	No	49,474	32	100	1
UHGV-0188943	No	49,453	32	100	1
UHGV-0184072	No	24,419	32	50	1