Viral OTU vOTU-004968

vOTU: vOTU-004968

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-004968
Number of Genomes	3
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00288 → vGENUS-13929 → vSUBGEN-22888 → vOTU-004968
Host Lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger formicilis
Viral Lifestyle	temperate

Representative Genome
Genome ID	UHGV-0177720
Biosample ID	N/A
Length	40,967 bps
CheckV Completeness	100.00% (Complete)
CDS Count	57
CDS Density	89.55%
tRNA Count	1
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0177720_1	phrog_27197	124.4	5.2e-39	N/A	unknown function
eggNOG-mapper	UHGV-0177720_1	394503.Ccel_3068	89.4	2.4e-20	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0177720_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0177720_1	NF007410	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0177720_4	1041142.ATTP01000043_gene5324	60.1	0.0000000584	N/A	N/A
PHROG	UHGV-0177720_5	phrog_72	50.0	0.000000000000021	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0177720_5	UniRef90_UPI001F3F3E5C	83.2	8.62e-17	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0177720_5	445972.ANACOL_01825	120.0	3.79e-32	N/A	N/A
structural_annotation	UHGV-0177720_5	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0177720_6	phrog_7566	64.9	1.1e-18	N/A	unknown function
eggNOG-mapper	UHGV-0177720_6	1507.HMPREF0262_00433	70.5	0.0000000000000195	N/A	N/A
KOfam	UHGV-0177720_7	K03111	127.3	2e-37	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0177720_7	phrog_44	131.2	7.7e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0177720_7	UniRef90_A0A1Q6T150	207.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0177720_7	411471.SUBVAR_04646	194.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0177720_7	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0177720_7	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0177720_7	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0177720_7	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0177720_7	PF00436,MF_00984,NF005242,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0177720_8	phrog_4973	56.6	4.2e-16	N/A	unknown function
UniRef90	UHGV-0177720_8	UniRef90_A0A3D3Y5F2	70.1	0.0000000000000348	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0177720_8	1072685.IX83_07155	52.0	0.0000000626	Helix-turn-helix domain	N/A
Pfam	UHGV-0177720_8	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0177720_8	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
PHROG	UHGV-0177720_9	phrog_16304	46.9	0.0000000000005	N/A	unknown function
UniRef90	UHGV-0177720_9	UniRef90_UPI001874F31C	120.0	8.76e-30	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0177720_9	447909.A6M985_9VIRU	53.9	0.00000931	calcium ion binding	N/A
Pfam	UHGV-0177720_9	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0177720_9	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0177720_9	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-0177720_9	PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
PHROG	UHGV-0177720_10	phrog_9804	43.7	0.0000000000038	N/A	unknown function
Pfam	UHGV-0177720_10	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0177720_10	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0177720_12	phrog_757	222.9	0	DNA methyltransferase	other
UniRef90	UHGV-0177720_12	UniRef90_UPI0006A41431	239.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0177720_12	1235790.C805_00032	263.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0177720_12	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0177720_12	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0177720_13	K01160	47.6	0.00000000000046	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0177720_13	phrog_34	52.2	0.000000000000013	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0177720_13	UniRef90_A0A379C663	131.0	8.62e-37	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0177720_13	875454.BAEW01000002_gene491	125.0	3.44e-35	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0177720_13	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0177720_13	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0177720_13	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0177720_18	phrog_9958	131.3	5.1e-39	N/A	unknown function
UniRef90	UHGV-0177720_18	UniRef90_UPI001D08A241	155.0	1.12104e-44	N/A	N/A
eggNOG-mapper	UHGV-0177720_18	1160721.RBI_I01591	139.0	3.76e-39	N/A	N/A
structural_annotation	UHGV-0177720_18	PF19789	N/A	N/A	N/A	N/A
UniRef90	UHGV-0177720_19	UniRef90_A0A3A6ECV8	72.8	0.0000000000000344	N/A	N/A
structural_annotation	UHGV-0177720_19	NF041588	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0177720_21	PF08281,MF_00674,TIGR01636	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0177720_22	1408437.JNJN01000043_gene801	82.0	3.31e-17	N/A	N/A
structural_annotation	UHGV-0177720_23	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0177720_24	phrog_16490	49.6	0.000000000000038	N/A	unknown function
eggNOG-mapper	UHGV-0177720_24	397290.C810_05212	58.9	0.000000108	N/A	N/A
PHROG	UHGV-0177720_25	phrog_22984	69.6	4.3e-20	N/A	unknown function
PHROG	UHGV-0177720_26	phrog_21718	40.8	0.000000000036	N/A	unknown function
KOfam	UHGV-0177720_27	K19666	46.2	0.00000000000071	solR, cepR, tofR; LuxR family transcriptional regulator, quorum-sensing system regulator SolR	N/A
Pfam	UHGV-0177720_27	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-0177720_27	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
structural_annotation	UHGV-0177720_27	PF04545,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0177720_28	1408437.JNJN01000060_gene452	248.0	0	heme binding	N/A
COG	UHGV-0177720_28	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
PHROG	UHGV-0177720_30	phrog_13256	53.2	0.0000000000000037	N/A	unknown function
eggNOG-mapper	UHGV-0177720_30	1226322.HMPREF1545_02800	52.4	0.0000000195	N/A	N/A
UniRef90	UHGV-0177720_31	UniRef90_UPI00102F4BEE	52.4	0.00000156	CTP synthase	N/A
eggNOG-mapper	UHGV-0177720_31	1042156.CXIVA_01580	62.8	0.0000000000477	N/A	N/A
KOfam	UHGV-0177720_32	K02395	80.8	3.2e-23	flgJ; peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-0177720_32	phrog_7698	164.9	0	endolysin	lysis
UniRef90	UHGV-0177720_32	UniRef90_A0A1C5V282	246.0	0	Exo-glucosaminidase lytG	N/A
eggNOG-mapper	UHGV-0177720_32	877414.ATWA01000019_gene2055	240.0	0	Cpl-7 lysozyme C-terminal domain protein	N/A
Pfam	UHGV-0177720_32	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0177720_32	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
COG	UHGV-0177720_32	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0177720_32	PF01510,PF18342,MF_04111,NF008758,COG3023,COG4991	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0177720_33	742742.HMPREF9452_00376	73.9	0.00000000000000544	tail collar domain protein	N/A
COG	UHGV-0177720_33	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0177720_33	COG4675	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0177720_34	PF10651,NF041074	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0177720_35	665956.HMPREF1032_03918	104.0	1.33e-22	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	N/A
PHROG	UHGV-0177720_36	phrog_3287	124.2	1.1e-36	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0177720_36	665956.HMPREF1032_03917	650.0	0	N/A	N/A
structural_annotation	UHGV-0177720_36	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-0177720_37	phrog_13046	56.5	4.5e-16	N/A	unknown function
eggNOG-mapper	UHGV-0177720_37	693746.OBV_23880	113.0	1.41e-28	N/A	N/A
structural_annotation	UHGV-0177720_37	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0177720_38	phrog_156	225.5	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0177720_38	693746.OBV_23930	430.0	0	N/A	N/A
structural_annotation	UHGV-0177720_38	PF12236,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-0177720_40	phrog_371	71.6	1.2e-20	major head protein	head and packaging
UniRef90	UHGV-0177720_40	UniRef90_UPI00164C0E21	102.0	4.81e-21	Mu-like prophage major head subunit gpT family protein	N/A
eggNOG-mapper	UHGV-0177720_40	1519439.JPJG01000060_gene1890	117.0	1.68e-27	N/A	N/A
structural_annotation	UHGV-0177720_40	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0177720_41	phrog_35275	57.0	2.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-0177720_41	1226322.HMPREF1545_03846	58.5	0.000000481	N/A	N/A
KOfam	UHGV-0177720_43	K21523	58.6	2.4e-17	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-0177720_43	phrog_2	94.4	1.9e-27	terminase large subunit	head and packaging
UniRef90	UHGV-0177720_43	UniRef90_UPI001F401ABC	619.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0177720_43	1408437.JNJN01000002_gene1397	139.0	1.93e-33	Phage terminase large subunit	N/A
COG	UHGV-0177720_43	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0177720_43	PF03354,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-0177720_45	phrog_419	85.6	1.1e-26	N/A	unknown function
UniRef90	UHGV-0177720_45	UniRef90_A0A1L5L3J8	104.0	1.98e-27	PGDYG protein (Fragment)	N/A
eggNOG-mapper	UHGV-0177720_45	203119.Cthe_2457	102.0	1.63e-27	N/A	N/A
KOfam	UHGV-0177720_49	K14059	190.6	0	int; integrase	N/A
PHROG	UHGV-0177720_49	phrog_1	196.0	0	integrase	integration and excision
UniRef90	UHGV-0177720_49	UniRef90_A0A367GI93	293.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0177720_49	1507.HMPREF0262_00307	197.0	0	Phage integrase family	N/A
Pfam	UHGV-0177720_49	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0177720_49	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0177720_49	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0177720_50	1284352.AOIG01000003_gene1052	60.1	0.0000000178	N/A	N/A
structural_annotation	UHGV-0177720_50	PF15729	N/A	N/A	N/A	N/A
PHROG	UHGV-0177720_51	phrog_8	44.5	0.0000000000036	transcriptional regulator	transcription regulation
UniRef90	UHGV-0177720_51	UniRef90_UPI001966F1BB	81.6	1.65e-17	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0177720_51	1378168.N510_01712	68.9	0.0000000000014	N/A	N/A
Pfam	UHGV-0177720_51	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0177720_51	PF01381,MF_00535,NF007257,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0177720_52	K22300	64.3	2.7e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0177720_52	phrog_8	50.1	0.000000000000071	transcriptional regulator	transcription regulation
UniRef90	UHGV-0177720_52	UniRef90_G4KQB4	78.6	5.78e-18	Putative Xre family DNA-binding protein	N/A
eggNOG-mapper	UHGV-0177720_52	693746.OBV_25500	78.6	9.69e-19	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0177720_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0177720_52	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0177720_52	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0177720_55	596152.DesU5LDRAFT_1910	85.5	7.87e-18	N/A	N/A
structural_annotation	UHGV-0177720_55	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-0177720_57	phrog_4433	144.5	8.80015e-43	N/A	unknown function
UniRef90	UHGV-0177720_57	UniRef90_A0A6M5C839	111.0	1.84e-28	Putative ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-0177720_57	573061.Clocel_3578	115.0	4.07e-29	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0177720_57	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0177720	Yes	40,967	54	100	1
UHGV-0184715	No	40,939	55	100	1
UHGV-0198808	No	35,858	54	83	1