Viral OTU vOTU-005499

vOTU: vOTU-005499

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-005499
Number of Genomes	4
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00197 → vGENUS-18363 → vSUBGEN-34755 → vOTU-005499
Host Lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_C
Viral Lifestyle	temperate

Representative Genome
Genome ID	UHGV-0175072
Biosample ID	SAMN09781760
Length	33,154 bps
CheckV Completeness	100.00% (Complete)
CDS Count	48
CDS Density	94.17%
tRNA Count	0
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0175072_1	K07505	304.6	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0175072_1	phrog_2597	926.7	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175072_1	UniRef90_R7GSM0	1096.0	0	Primase 2	N/A
eggNOG-mapper	UHGV-0175072_1	641112.ACOK01000073_gene2877	750.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0175072_1	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0175072_1	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0175072_1	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0175072_1	PF13481,PF08707,MF_00348,NF004384,NF040561,COG3598,COG1467	N/A	N/A	N/A	N/A
UniRef90	UHGV-0175072_2	UniRef90_R7GTI6	141.0	8.82818e-43	Addiction module antitoxin RelB/DinJ family	N/A
eggNOG-mapper	UHGV-0175072_2	864563.HMPREF9166_1453	48.1	0.00000256	Addiction module antitoxin, RelB DinJ family	N/A
COG	UHGV-0175072_2	COG3077	N/A	N/A	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	N/A
KOfam	UHGV-0175072_3	K19157	132.0	4.3e-39	yafQ; mRNA interferase YafQ [EC:3.1.-.-]	N/A
PHROG	UHGV-0175072_3	phrog_7251	137.1	3.09995e-41	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0175072_3	UniRef90_A0A352TI67	157.0	0	Type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	N/A
eggNOG-mapper	UHGV-0175072_3	457412.RSAG_00125	137.0	4.77997e-41	addiction module toxin, RelE StbE family	N/A
Pfam	UHGV-0175072_3	PF15738	N/A	N/A	Bacterial toxin of type II toxin-antitoxin system, YafQ	YafQ_toxin
NCBIFam	UHGV-0175072_3	TIGR02385.1	N/A	N/A	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	N/A
COG	UHGV-0175072_3	COG3041	N/A	N/A	mRNA-degrading endonuclease YafQ (mRNA interferase), toxin component of the YafQ-DinJ toxin-antitoxin module	N/A
structural_annotation	UHGV-0175072_3	PF15738,TIGR00053,COG3041	N/A	N/A	N/A	N/A
KOfam	UHGV-0175072_4	K17677	347.7	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0175072_4	phrog_16	282.7	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175072_4	UniRef90_R7GUH4	1034.0	0	Helicase C-terminal domain protein	N/A
eggNOG-mapper	UHGV-0175072_4	641112.ACOK01000073_gene2876	808.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0175072_4	mREase_IV_00005	145.0	6.50202e-43	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0175072_4	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0175072_4	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0175072_4	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0175072_4	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0175072_5	phrog_2698	167.2	0	N/A	unknown function
UniRef90	UHGV-0175072_5	UniRef90_UPI000F54335B	139.0	1.41e-38	N/A	N/A
eggNOG-mapper	UHGV-0175072_5	641112.ACOK01000073_gene2875	155.0	2.8026e-45	N/A	N/A
structural_annotation	UHGV-0175072_5	PF17426,NF005674	N/A	N/A	N/A	N/A
PHROG	UHGV-0175072_6	phrog_124	199.1	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175072_6	UniRef90_UPI0011620CA2	304.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0175072_6	641112.ACOK01000073_gene2874	414.0	0	AAA domain	N/A
Pfam	UHGV-0175072_6	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0175072_6	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0175072_7	K03546	68.6	7.2e-20	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0175072_7	phrog_1499	473.5	0	N/A	unknown function
UniRef90	UHGV-0175072_7	UniRef90_A0A3C0II26	709.0	0	Chromosome segregation protein SMC	N/A
eggNOG-mapper	UHGV-0175072_7	641112.ACOK01000073_gene2873	523.0	0	domain protein	N/A
PADLOC	UHGV-0175072_7	AAA_15	41.7	0.000000000018	N/A	N/A
Pfam	UHGV-0175072_7	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0175072_7	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0175072_7	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
KOfam	UHGV-0175072_16	K07741	144.6	1.49939e-42	antB; anti-repressor protein	N/A
PHROG	UHGV-0175072_16	phrog_5817	116.3	3.1e-34	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0175072_16	UniRef90_A0A356CZA0	323.0	0	Oxidoreductase	N/A
eggNOG-mapper	UHGV-0175072_16	1540257.JQMW01000004_gene443	279.0	0	Phage antirepressor protein KilAC domain	N/A
Pfam	UHGV-0175072_16	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0175072_16	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0175072_16	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0175072_16	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
KOfam	UHGV-0175072_19	K01356	70.7	3.2e-20	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0175072_19	phrog_4	113.2	2.4e-33	transcriptional repressor	transcription regulation
UniRef90	UHGV-0175072_19	UniRef90_R5UYQ9	167.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0175072_19	1160721.RBI_II00559	127.0	3.94e-33	Peptidase S24-like	N/A
Pfam	UHGV-0175072_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0175072_19	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0175072_19	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0175072_19	PF00717,PF12844,MF_00015,TIGR00498,TIGR03070,COG1974,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0175072_20	phrog_806	54.4	0.0000000000000024	N/A	unknown function
UniRef90	UHGV-0175072_20	UniRef90_A0A3D5KV50	181.0	0	N/A	N/A
eggNOG-mapper	UHGV-0175072_20	1688.BCUN_1452	83.6	5.92e-17	N/A	N/A
Pfam	UHGV-0175072_20	PF16729	N/A	N/A	N/A	DUF5067
structural_annotation	UHGV-0175072_20	PF16729,MF_00791,NF003967,COG2967	N/A	N/A	N/A	N/A
KOfam	UHGV-0175072_21	K06400	285.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0175072_21	phrog_95	310.3	0	integrase	integration and excision
UniRef90	UHGV-0175072_21	UniRef90_R7FBT6	627.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0175072_21	697281.Mahau_2563	564.0	0	resolvase	N/A
Pfam	UHGV-0175072_21	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0175072_21	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0175072_21	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0175072_21	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0175072_21	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0175072_22	K01447	99.2	5.8e-29	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0175072_22	phrog_2338	102.2	7.1e-30	endolysin	lysis
UniRef90	UHGV-0175072_22	UniRef90_A0A374VU40	346.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0175072_22	411473.RUMCAL_00096	347.0	0	Ami_2	N/A
Pfam	UHGV-0175072_22	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0175072_22	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0175072_22	PF01510,PF20780,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0175072_23	phrog_443	57.9	3e-16	holin	lysis
UniRef90	UHGV-0175072_23	UniRef90_UPI0013EB788B	89.7	4.29e-22	holin	N/A
eggNOG-mapper	UHGV-0175072_23	411490.ANACAC_00704	81.6	7.67e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0175072_23	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0175072_23	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0175072_24	phrog_1193	47.2	0.00000000000036	hemolysin	other
UniRef90	UHGV-0175072_24	UniRef90_R7H572	123.0	2e-35	Gp19	N/A
eggNOG-mapper	UHGV-0175072_24	1292035.H476_1000	63.2	0.00000000000287	Haemolysin XhlA	N/A
Pfam	UHGV-0175072_24	PF10779	N/A	N/A	Haemolysin XhlA	XhlA
structural_annotation	UHGV-0175072_26	PF14594,TIGR03361,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0175072_28	phrog_58	193.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0175072_28	UniRef90_R7FII5	498.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0175072_28	411473.RUMCAL_01938	499.0	0	tail tape measure protein, TP901	N/A
Pfam	UHGV-0175072_28	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0175072_28	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0175072_28	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0175072_28	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0175072_29	phrog_774	56.2	7.5e-16	N/A	unknown function
eggNOG-mapper	UHGV-0175072_29	397290.C810_05225	116.0	9.44e-33	N/A	N/A
structural_annotation	UHGV-0175072_30	PF10827	N/A	N/A	N/A	N/A
PHROG	UHGV-0175072_31	phrog_581	310.6	0	minor head protein	head and packaging
UniRef90	UHGV-0175072_31	UniRef90_U2K8C2	642.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0175072_31	411473.RUMCAL_01925	642.0	0	N/A	N/A
Pfam	UHGV-0175072_31	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0175072_31	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0175072_31	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0175072_32	phrog_533	319.8	0	portal protein	head and packaging
UniRef90	UHGV-0175072_32	UniRef90_U2KRP5	602.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0175072_32	411473.RUMCAL_01924	602.0	0	N/A	N/A
structural_annotation	UHGV-0175072_32	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0175072_33	K06909	110.2	2.6e-32	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0175072_33	phrog_10250	139.9	1.6e-41	N/A	unknown function
UniRef90	UHGV-0175072_33	UniRef90_A0A315Y4A8	452.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0175072_33	641112.ACOK01000073_gene2888	447.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0175072_33	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0175072_33	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0175072_33	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0175072_33	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0175072_34	phrog_706	138.5	4.00001e-41	N/A	unknown function
UniRef90	UHGV-0175072_34	UniRef90_A0A173TSE6	118.0	3.96e-30	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0175072_34	411473.RUMCAL_01937	234.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0175072_34	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0175072_34	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0175072_35	phrog_4450	76.2	4.9e-22	N/A	unknown function
eggNOG-mapper	UHGV-0175072_35	641112.ACOK01000073_gene2902	90.1	1.4e-21	N/A	N/A
Pfam	UHGV-0175072_35	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-0175072_35	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0175072_36	phrog_3099	150.1	7.00649e-45	N/A	unknown function
eggNOG-mapper	UHGV-0175072_36	411473.RUMCAL_01935	258.0	0	N/A	N/A
structural_annotation	UHGV-0175072_36	PF08813,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0175072_37	phrog_3266	168.6	0	tail completion	connector
UniRef90	UHGV-0175072_37	UniRef90_A0A3C0IHV8	187.0	0	Chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-0175072_37	411473.RUMCAL_01934	216.0	0	N/A	N/A
structural_annotation	UHGV-0175072_37	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0175072_38	phrog_556	87.4	1.3e-25	minor head protein	head and packaging
UniRef90	UHGV-0175072_38	UniRef90_A0A415UCL3	70.1	0.000000000000254	Capsid protein	N/A
eggNOG-mapper	UHGV-0175072_38	1151292.QEW_4532	66.6	0.00000000000135	Minor capsid protein	N/A
Pfam	UHGV-0175072_38	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0175072_38	PF11114	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0175072_39	411473.RUMCAL_01932	119.0	2.37e-33	N/A	N/A
structural_annotation	UHGV-0175072_39	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0175072_40	phrog_541	94.3	9.6e-28	head-tail adaptor	connector
eggNOG-mapper	UHGV-0175072_40	642492.Clole_0822	81.6	4.44e-18	N/A	N/A
PHROG	UHGV-0175072_41	phrog_267	66.6	8.8e-20	major head protein	head and packaging
UniRef90	UHGV-0175072_41	UniRef90_A0A1C6GMA6	397.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0175072_41	718252.FP2_06660	244.0	0	N/A	N/A
structural_annotation	UHGV-0175072_41	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0175072_42	phrog_194	54.2	0.0000000000000032	head scaffolding protein	head and packaging
UniRef90	UHGV-0175072_42	UniRef90_R7FEY9	237.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0175072_42	411473.RUMCAL_01929	237.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0175072_42	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0175072_42	PF06810,MF_02110	N/A	N/A	N/A	N/A
KOfam	UHGV-0175072_43	K07474	68.7	1.8e-19	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0175072_43	phrog_17390	64.2	9.3e-19	N/A	unknown function
UniRef90	UHGV-0175072_43	UniRef90_UPI0001F01BB6	112.0	3.76e-29	terminase small subunit	N/A
eggNOG-mapper	UHGV-0175072_43	1158607.UAU_05157	87.8	1.67e-20	Terminase small subunit	N/A
Pfam	UHGV-0175072_43	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
structural_annotation	UHGV-0175072_43	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0175072_44	phrog_36	74.9	1.3e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0175072_44	UniRef90_UPI001D017002	91.3	4.55e-21	N/A	N/A
Pfam	UHGV-0175072_44	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
COG	UHGV-0175072_44	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0175072_44	PF04545,MF_00674,TIGR02980,COG1595	N/A	N/A	N/A	N/A
PHROG	UHGV-0175072_46	phrog_599	50.1	0.000000000000069	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0175072_46	UniRef90_UPI0009FFE2E9	70.9	0.000000000000313	50S ribosomal protein L32	N/A
Pfam	UHGV-0175072_46	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0175072_46	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
KOfam	UHGV-0175072_47	K01160	68.4	1.8e-19	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0175072_47	phrog_140	101.7	7.1e-30	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175072_47	UniRef90_A0A3D5KWI4	235.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0175072_47	641112.ACOK01000073_gene2878	185.0	0	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0175072_47	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0175072_47	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0175072_47	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0175072_48	K07505	54.8	0.0000000000000017	repA; regulatory protein RepA	N/A
PHROG	UHGV-0175072_48	phrog_2597	196.0	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175072_48	UniRef90_A0A7X5IGW1	145.0	9.87e-40	DNA primase (Fragment)	N/A
eggNOG-mapper	UHGV-0175072_48	641112.ACOK01000073_gene2877	219.0	0	Primase C terminal 2 (PriCT-2)	N/A
COG	UHGV-0175072_48	COG3598	N/A	N/A	RecA-family ATPase	N/A

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0175072	Yes	33,154	49	100	1
UHGV-0207231	No	33,154	49	100	1
UHGV-0252266	No	33,618	48	88	1
UHGV-0112726	No	17,348	48	50	1