Viral OTU vOTU-005898

vOTU: vOTU-005898

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-005898
Number of Genomes	3
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00040 → vSUBFAM-00144 → vGENUS-00081 → vSUBGEN-23071 → vOTU-005898
Host Lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales
Viral Lifestyle	temperate

Representative Genome
Genome ID	UHGV-1367890
Biosample ID	N/A
Length	38,904 bps
CheckV Completeness	100.00% (Complete)
CDS Count	63
CDS Density	91.50%
tRNA Count	1
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1367890_1	693746.OBV_01590	335.0	0	N/A	N/A
Pfam	UHGV-1367890_1	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
eggNOG-mapper	UHGV-1367890_2	693746.OBV_01600	161.0	2.2e-40	N/A	N/A
KOfam	UHGV-1367890_3	K08640	100.2	2.9e-29	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-1367890_3	phrog_18955	155.1	0	N/A	unknown function
UniRef90	UHGV-1367890_3	UniRef90_UPI001C035E39	608.0	0	D-Ala-D-Ala carboxypeptidase family metallohydrolase	N/A
eggNOG-mapper	UHGV-1367890_3	1235797.C816_04171	345.0	0	Peptidase M15	N/A
Pfam	UHGV-1367890_3	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
Pfam	UHGV-1367890_3	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-1367890_3	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367890_3	PF09992,PF08291,COG4632,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-1367890_4	phrog_199	86.1	3.4e-25	holin	lysis
UniRef90	UHGV-1367890_4	UniRef90_K1UL76	257.0	0	Holin, toxin secretion/phage lysis	N/A
eggNOG-mapper	UHGV-1367890_4	411467.BACCAP_00280	136.0	4.68e-39	Bacteriophage holin family	N/A
Pfam	UHGV-1367890_4	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1367890_4	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1367890_4	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1367890_4	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1367890_6	phrog_10993	166.1	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-1367890_6	UniRef90_K1UI43	239.0	0	N/A	N/A
eggNOG-mapper	UHGV-1367890_6	718252.FP2_16970	139.0	4.1e-36	N/A	N/A
Pfam	UHGV-1367890_6	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1367890_6	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-1367890_7	phrog_37900	93.3	9.5e-29	N/A	unknown function
UniRef90	UHGV-1367890_7	UniRef90_UPI00051B4A1C	305.0	0	N/A	N/A
eggNOG-mapper	UHGV-1367890_7	1519439.JPJG01000060_gene1894	305.0	0	N/A	N/A
Pfam	UHGV-1367890_7	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-1367890_7	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-1367890_7	PF19789	N/A	N/A	N/A	N/A
KOfam	UHGV-1367890_8	K16617	138.8	0	COL13A; collagen type XIII alpha	N/A
PHROG	UHGV-1367890_8	phrog_819	177.3	0	tail protein	tail
UniRef90	UHGV-1367890_8	UniRef90_UPI001F4CFECE	214.0	0	collagen-like protein	N/A
Pfam	UHGV-1367890_8	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-1367890_9	phrog_156	106.7	2.1e-33	portal protein	head and packaging
eggNOG-mapper	UHGV-1367890_9	693746.OBV_01670	783.0	0	N/A	N/A
structural_annotation	UHGV-1367890_9	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
UniRef90	UHGV-1367890_10	UniRef90_A0A4D7ASB8	788.0	0	N/A	N/A
eggNOG-mapper	UHGV-1367890_10	693746.OBV_01680	731.0	0	N/A	N/A
structural_annotation	UHGV-1367890_10	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
KOfam	UHGV-1367890_11	K06909	141.7	5.89947e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1367890_11	phrog_979	144.9	3.78351e-44	terminase large subunit	head and packaging
UniRef90	UHGV-1367890_11	UniRef90_K1SF61	768.0	0	Terminase-like protein (Fragment)	N/A
eggNOG-mapper	UHGV-1367890_11	693746.OBV_01690	696.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-1367890_11	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1367890_11	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1367890_11	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1367890_12	phrog_422	132.6	2.7e-39	major head protein	head and packaging
UniRef90	UHGV-1367890_12	UniRef90_K1TJJ5	453.0	0	Gp7 (Fragment)	N/A
eggNOG-mapper	UHGV-1367890_12	693746.OBV_01700	554.0	0	N/A	N/A
Pfam	UHGV-1367890_12	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
structural_annotation	UHGV-1367890_12	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1367890_14	UniRef90_A0A4D7B2L2	62.0	0.0000000000182	Cysteine-rich KTR domain-containing protein	N/A
Pfam	UHGV-1367890_14	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-1367890_14	PF14205,COG4416	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1367890_15	1519439.JPJG01000011_gene57	133.0	5.72e-38	N/A	N/A
structural_annotation	UHGV-1367890_15	PF11650	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1367890_17	693746.OBV_01750	110.0	6.46e-29	N/A	N/A
structural_annotation	UHGV-1367890_19	PF10723	N/A	N/A	N/A	N/A
PHROG	UHGV-1367890_20	phrog_34845	40.7	0.00000000003	N/A	unknown function
PHROG	UHGV-1367890_21	phrog_15863	164.9	0	N/A	unknown function
UniRef90	UHGV-1367890_21	UniRef90_A0A810QAR9	296.0	0	Molecular chaperone DnaJ	N/A
eggNOG-mapper	UHGV-1367890_21	693746.OBV_01780	249.0	0	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-1367890_21	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
structural_annotation	UHGV-1367890_24	PF17917	N/A	N/A	N/A	N/A
KOfam	UHGV-1367890_27	K14059	189.5	0	int; integrase	N/A
PHROG	UHGV-1367890_27	phrog_1	188.7	0	integrase	integration and excision
UniRef90	UHGV-1367890_27	UniRef90_A0A4D7AYG4	524.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1367890_27	693746.OBV_01970	410.0	0	Phage integrase family	N/A
Pfam	UHGV-1367890_27	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1367890_27	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1367890_27	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1367890_28	K22300	77.4	2.5e-22	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1367890_28	phrog_8	55.2	0.0000000000000016	transcriptional regulator	transcription regulation
UniRef90	UHGV-1367890_28	UniRef90_K1TCM8	204.0	0	Protein containing Helix-turn-helix type 3 domain protein	N/A
eggNOG-mapper	UHGV-1367890_28	1378168.N510_01124	57.8	0.0000000256	Transcriptional	N/A
Pfam	UHGV-1367890_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1367890_28	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1367890_28	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1367890_29	UniRef90_UPI001D0E690A	98.2	1.35e-25	helix-turn-helix domain-containing protein	N/A
COG	UHGV-1367890_29	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1367890_29	PF05339,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1367890_30	756499.Desde_3141	57.4	0.00000115	Bacterial Ig-like domain 2	N/A
NCBIFam	UHGV-1367890_30	NF033223.2	N/A	N/A	YHYH domain-containing protein	N/A
COG	UHGV-1367890_30	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367890_33	PF12728	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367890_34	PF18359,COG4466	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367890_37	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1367890_39	phrog_298	65.5	4.6e-20	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1367890_39	UniRef90_UPI00058C5410	101.0	3.21e-23	PD-(D/E)XK nuclease family protein	N/A
COG	UHGV-1367890_39	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-1367890_39	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-1367890_40	phrog_10048	52.3	2.5e-26	N/A	unknown function
eggNOG-mapper	UHGV-1367890_40	1111134.HMPREF1253_1200	108.0	7.24e-26	N/A	N/A
structural_annotation	UHGV-1367890_40	PF04404,TIGR00607,COG5055	N/A	N/A	N/A	N/A
UniRef90	UHGV-1367890_41	UniRef90_A0A4D7AYE9	105.0	1.75e-26	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1367890_41	PF00436,MF_00984,TIGR04418,COG2965	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367890_42	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-1367890_45	K00571	105.5	5.9e-31	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1367890_45	phrog_23224	187.0	0	DNA methyltransferase	other
UniRef90	UHGV-1367890_45	UniRef90_D4K450	363.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1367890_45	718252.FP2_06750	363.0	0	DNA methylase	N/A
PADLOC	UHGV-1367890_45	MTase_II_00172	94.8	1.6e-28	Type II methyltransferase	RM
Pfam	UHGV-1367890_45	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1367890_45	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1367890_45	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-1367890_46	K01160	62.6	1.1e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1367890_46	phrog_140	122.1	3.5e-36	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1367890_46	UniRef90_A0A7X9D805	111.0	6.02e-29	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1367890_46	1095750.HMPREF9970_1673	96.7	8.81e-24	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1367890_46	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1367890_46	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1367890_46	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1367890_50	742735.HMPREF9467_00858	98.6	2e-23	C-5 cytosine-specific DNA methylase	N/A
Pfam	UHGV-1367890_50	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1367890_50	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
UniRef90	UHGV-1367890_52	UniRef90_A0A8D9PDT5	62.8	0.000000000119	Hydrogenase/urease nickel incorporation protein	N/A
structural_annotation	UHGV-1367890_53	PF18300,NF000331,COG4568	N/A	N/A	N/A	N/A
UniRef90	UHGV-1367890_54	UniRef90_A0A8D9PDK2	57.4	0.0000000239	Zinc-ribbon containing domain	N/A
UniRef90	UHGV-1367890_57	UniRef90_A0A845MZZ9	88.6	1.39e-20	N/A	N/A
KOfam	UHGV-1367890_58	K02647	52.0	0.0000000000000084	cdaR; carbohydrate diacid regulator	N/A
UniRef90	UHGV-1367890_58	UniRef90_K1SN71	125.0	1.72e-36	HTH_30 domain-containing protein	N/A
eggNOG-mapper	UHGV-1367890_58	877415.JNJQ01000014_gene417	59.3	0.00000000182	sugar diacid	N/A
Pfam	UHGV-1367890_58	PF13556	N/A	N/A	PucR C-terminal helix-turn-helix domain	HTH_30
COG	UHGV-1367890_58	COG3835	N/A	N/A	Sugar diacid utilization regulator CdaR	N/A
structural_annotation	UHGV-1367890_58	PF13556,TIGR00637,COG2771	N/A	N/A	N/A	N/A
UniRef90	UHGV-1367890_59	UniRef90_A0A3A9FC54	68.2	0.000000000000117	Sigma-70 family RNA polymerase sigma factor	N/A
structural_annotation	UHGV-1367890_59	PF04545,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
UniRef90	UHGV-1367890_63	UniRef90_A0A810QFN4	970.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1367890_63	693746.OBV_01590	593.0	0	N/A	N/A

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1367890	Yes	38,904	58	100	1
UHGV-1279433	No	38,904	58	100	1
UHGV-1386985	No	30,270	58	77	1