Viral OTU vOTU-005925

vOTU: vOTU-005925

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-005925
Number of Genomes	2
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00611 → vGENUS-16672 → vSUBGEN-30267 → vOTU-005925
Host Lineage	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella
Viral Lifestyle	lytic

Representative Genome
Genome ID	UHGV-0175858
Biosample ID	N/A
Length	30,742 bps
CheckV Completeness	100.00% (Complete)
CDS Count	56
CDS Density	95.30%
tRNA Count	0
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0175858_1	phrog_4102	56.7	5.4e-16	terminase small subunit	head and packaging
UniRef90	UHGV-0175858_1	UniRef90_UPI0013662E3C	98.2	3.6e-24	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0175858_1	1232436.CAPF01000009_gene1763	58.2	0.00000000364	N/A	N/A
structural_annotation	UHGV-0175858_1	PF02796	N/A	N/A	N/A	N/A
KOfam	UHGV-0175858_2	K06909	124.0	1.6e-36	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0175858_2	phrog_10250	144.7	5.00264e-43	N/A	unknown function
UniRef90	UHGV-0175858_2	UniRef90_N2BLR4	405.0	0	PBSX family phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-0175858_2	1111121.HMPREF1247_0800	405.0	0	Terminase-like family	N/A
Pfam	UHGV-0175858_2	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0175858_2	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0175858_2	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0175858_2	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0175858_3	phrog_64	133.8	2.69999e-40	portal protein	head and packaging
UniRef90	UHGV-0175858_3	UniRef90_A0A174A8R0	677.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-0175858_3	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0175858_3	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0175858_4	phrog_595	106.5	2.3e-31	head maturation protease	head and packaging
UniRef90	UHGV-0175858_4	UniRef90_A0A395ZWQ9	360.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0175858_4	1504822.CCNO01000013_gene286	255.0	0	cell adhesion	N/A
Pfam	UHGV-0175858_4	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0175858_4	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0175858_4	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0175858_5	PF21279,NF040942	N/A	N/A	N/A	N/A
PHROG	UHGV-0175858_7	phrog_5	73.5	3.1e-21	tail completion or Neck1 protein	connector
UniRef90	UHGV-0175858_7	UniRef90_A0A6A8M6L6	238.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0175858_7	1504822.CCNO01000013_gene284	100.0	4.04e-25	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0175858_7	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0175858_7	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0175858_8	phrog_194	52.2	0.000000000000013	head scaffolding protein	head and packaging
UniRef90	UHGV-0175858_8	UniRef90_A0A174AAF6	157.0	1.4013e-45	Clp R domain-containing protein	N/A
Pfam	UHGV-0175858_8	PF02861	N/A	N/A	Clp amino terminal domain, pathogenicity island component	Clp_N
structural_annotation	UHGV-0175858_8	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0175858_9	phrog_212	252.2	0	major head protein	head and packaging
UniRef90	UHGV-0175858_9	UniRef90_A0A2V2FIN1	459.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0175858_9	935836.JAEL01000021_gene1494	351.0	0	N/A	N/A
structural_annotation	UHGV-0175858_9	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0175858_11	phrog_17977	51.1	0.000000000000019	N/A	unknown function
UniRef90	UHGV-0175858_11	UniRef90_UPI00141211AB	107.0	5.6e-28	head-tail adaptor protein	N/A
Pfam	UHGV-0175858_11	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-0175858_11	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0175858_12	UniRef90_A0A415JI88	201.0	0	N/A	N/A
structural_annotation	UHGV-0175858_12	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0175858_13	phrog_885	84.6	8.3e-25	major tail protein	tail
UniRef90	UHGV-0175858_13	UniRef90_A0A843J9F0	211.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0175858_13	1504822.CCNO01000012_gene492	244.0	0	N/A	N/A
structural_annotation	UHGV-0175858_13	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0175858_16	phrog_6900	213.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0175858_16	UniRef90_A0A174ADB2	338.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0175858_16	1111121.HMPREF1247_0787	294.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0175858_16	COG5412	N/A	N/A	Phage-related protein	N/A
UniRef90	UHGV-0175858_17	UniRef90_A0A7Y0EUM5	156.0	7.83326e-43	Tail fiber protein	N/A
eggNOG-mapper	UHGV-0175858_17	78345.BMERY_0869	153.0	2.04029e-42	N/A	N/A
structural_annotation	UHGV-0175858_17	PF16774,TIGR02126,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0175858_18	phrog_538	146.1	2.49431e-43	minor tail protein	tail
UniRef90	UHGV-0175858_18	UniRef90_A0A087E4D2	217.0	0	Phage head fiber protein	N/A
eggNOG-mapper	UHGV-0175858_18	469378.Ccur_02640	191.0	0	N/A	N/A
Pfam	UHGV-0175858_18	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0175858_18	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0175858_20	phrog_9994	149.4	2.24208e-44	N/A	unknown function
UniRef90	UHGV-0175858_20	UniRef90_A0A7K3I4P1	95.9	6.86e-20	H_lectin domain-containing protein	N/A
eggNOG-mapper	UHGV-0175858_20	1680.BADO_1228	112.0	1.2e-26	N/A	N/A
structural_annotation	UHGV-0175858_20	PF08931,PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-0175858_21	phrog_21718	43.0	0.0000000000069	N/A	unknown function
PHROG	UHGV-0175858_23	phrog_16490	48.2	0.00000000000021	N/A	unknown function
eggNOG-mapper	UHGV-0175858_23	397290.C810_05212	68.9	0.000000000025	N/A	N/A
structural_annotation	UHGV-0175858_24	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0175858_26	phrog_443	63.2	6.7e-18	holin	lysis
UniRef90	UHGV-0175858_26	UniRef90_UPI00096A4162	100.0	2.96e-26	holin	N/A
eggNOG-mapper	UHGV-0175858_26	1123263.AUKY01000015_gene1627	84.7	9.5e-21	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0175858_26	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0175858_26	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0175858_28	phrog_21825	153.5	1.4013e-45	endolysin	lysis
UniRef90	UHGV-0175858_28	UniRef90_UPI0011066B38	241.0	0	peptidoglycan-binding protein	N/A
eggNOG-mapper	UHGV-0175858_28	479437.Elen_2649	205.0	0	CHAP domain	N/A
Pfam	UHGV-0175858_28	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-0175858_28	PF09374	N/A	N/A	Predicted Peptidoglycan domain	PG_binding_3
COG	UHGV-0175858_28	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0175858_28	PF00877,TIGR02594,COG3738	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0175858_29	PF20800	N/A	N/A	N/A	N/A
UniRef90	UHGV-0175858_30	UniRef90_A0A412ANB7	183.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0175858_30	553184.ATORI0001_1162	92.4	8.4e-22	sequence-specific DNA binding	N/A
Pfam	UHGV-0175858_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0175858_30	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0175858_30	PF14590,TIGR03070,COG2944	N/A	N/A	N/A	N/A
UniRef90	UHGV-0175858_32	UniRef90_A0A5C7F3R3	54.3	0.0000001	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0175858_32	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0175858_32	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
KOfam	UHGV-0175858_34	K01160	64.5	3e-18	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0175858_34	phrog_140	71.5	1.4e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175858_34	UniRef90_UPI0009323E96	112.0	4.86e-29	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0175858_34	1504822.CCNO01000013_gene309	108.0	2.17e-28	crossover junction endodeoxyribonuclease activity	N/A
Pfam	UHGV-0175858_34	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0175858_34	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0175858_34	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0175858_35	phrog_2760	160.1	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175858_35	UniRef90_A4E7B6	383.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-0175858_35	445975.COLSTE_01129	341.0	0	RecT family	N/A
Pfam	UHGV-0175858_35	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0175858_35	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-0175858_35	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0175858_35	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
UniRef90	UHGV-0175858_36	UniRef90_UPI001C959CA1	125.0	5.54e-30	N/A	N/A
structural_annotation	UHGV-0175858_36	PF07083	N/A	N/A	N/A	N/A
UniRef90	UHGV-0175858_37	UniRef90_A0A100YV74	82.8	1.57e-18	Integration host factor	N/A
eggNOG-mapper	UHGV-0175858_37	1504822.CCNO01000015_gene823	81.3	1.07e-18	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits	N/A
NCBIFam	UHGV-0175858_37	NF041260.1	N/A	N/A	integration host factor, actinobacterial type	N/A
COG	UHGV-0175858_37	COG0099	N/A	N/A	Ribosomal protein S13	N/A
structural_annotation	UHGV-0175858_37	PF00416,MF_01315,NF041260,COG0099	N/A	N/A	N/A	N/A
KOfam	UHGV-0175858_38	K03111	136.6	2.9e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0175858_38	phrog_44	127.1	1.4e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0175858_38	UniRef90_UPI000C8360DF	216.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0175858_38	742722.HMPREF9463_00041	213.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0175858_38	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0175858_38	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0175858_38	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0175858_38	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0175858_38	PF00436,MF_00984,NF005406,COG0629	N/A	N/A	N/A	N/A
UniRef90	UHGV-0175858_39	UniRef90_UPI0013EAC480	97.4	5.22e-21	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0175858_39	521003.COLINT_02319	65.9	0.000000000134	HNH endonuclease	N/A
Pfam	UHGV-0175858_39	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0175858_39	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0175858_39	PF19808	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0175858_43	PF01503,MF_01020,TIGR03188,COG0140	N/A	N/A	N/A	N/A
KOfam	UHGV-0175858_48	K19779	43.2	0.0000000000068	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
PHROG	UHGV-0175858_48	phrog_599	44.8	0.0000000000025	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0175858_48	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0175858_48	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0175858_48	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
KOfam	UHGV-0175858_49	K00558	49.0	0.000000000000058	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0175858_49	phrog_757	108.2	6.4e-32	DNA methyltransferase	other
UniRef90	UHGV-0175858_49	UniRef90_UPI001E43E539	292.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0175858_49	1384484.AEQU_0049	290.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0175858_49	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0175858_49	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0175858_51	phrog_3392	139.8	2.4e-41	N/A	unknown function
eggNOG-mapper	UHGV-0175858_51	1217710.F969_00044	123.0	1.57e-31	N/A	N/A
UniRef90	UHGV-0175858_53	UniRef90_UPI0011065E54	140.0	3.27063e-42	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0175858_53	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0175858_53	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0175858_53	PF01381,NF010465,COG3655	N/A	N/A	N/A	N/A
COG	UHGV-0175858_54	COG2452	N/A	N/A	Predicted site-specific integrase-resolvase	N/A
KOfam	UHGV-0175858_56	K07319	123.9	1.6e-36	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0175858_56	phrog_498	380.8	0	DNA methyltransferase	other
UniRef90	UHGV-0175858_56	UniRef90_C4F8G4	480.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0175858_56	521003.COLINT_02335	480.0	0	DNA methylase	N/A
PADLOC	UHGV-0175858_56	MTase_II_00015	236.5	0	Type II methyltransferase	RM
Pfam	UHGV-0175858_56	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0175858_56	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0175858_56	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0175858_56	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0175858	Yes	30,742	66	100	1
UHGV-0207994	No	30,742	66	100	1