Viral OTU vOTU-009088

vOTU: vOTU-009088

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-009088
Number of Genomes	12
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00001 → vSUBFAM-01113 → vGENUS-05632 → vSUBGEN-31108 → vOTU-009088
Host Lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Viral Lifestyle	temperate

Representative Genome
Genome ID	UHGV-0047357
Biosample ID	SAMEA1972463
Length	37,701 bps
CheckV Completeness	99.90% (High-quality)
CDS Count	52
CDS Density	90.40%
tRNA Count	0
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0047357_1	UniRef90_R6NXZ9	118.0	1.2e-33	Cna protein B-type domain	N/A
eggNOG-mapper	UHGV-0047357_1	411459.RUMOBE_02245	73.6	0.0000000000000124	N/A	N/A
COG	UHGV-0047357_1	COG4932	N/A	N/A	Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold	N/A
UniRef90	UHGV-0047357_3	UniRef90_A0A1G4WU60	346.0	0	The BURPS668_1122 family of deaminases	N/A
eggNOG-mapper	UHGV-0047357_3	1567014.A0A0A7RVY7_9VIRU	108.0	1.23e-23	Phage Mu protein F like protein	N/A
Pfam	UHGV-0047357_3	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0047357_3	PF14424	N/A	N/A	The BURPS668_1122 family of deaminases	Toxin-deaminase
KOfam	UHGV-0047357_5	K14059	217.0	0	int; integrase	N/A
PHROG	UHGV-0047357_5	phrog_1	189.0	0	integrase	integration and excision
UniRef90	UHGV-0047357_5	UniRef90_A0A2N0ULT2	465.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0047357_5	428125.CLOLEP_02743	315.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0047357_5	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0047357_5	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0047357_5	PF00589,PF02920,MF_01808,TIGR02224,COG4974,COG3422	N/A	N/A	N/A	N/A
PHROG	UHGV-0047357_6	phrog_1847	523.6	0	N/A	unknown function
UniRef90	UHGV-0047357_6	UniRef90_A0A355NQ11	448.0	0	N/A	N/A
eggNOG-mapper	UHGV-0047357_6	1200557.JHWV01000022_gene2461	389.0	0	T5orf172	N/A
Pfam	UHGV-0047357_6	PF13250	N/A	N/A	N/A	DUF4041
Pfam	UHGV-0047357_6	PF10544	N/A	N/A	T5orf172 domain	T5orf172
COG	UHGV-0047357_6	COG0172	N/A	N/A	Seryl-tRNA synthetase	N/A
structural_annotation	UHGV-0047357_6	PF13250,PF19824,MF_01506	N/A	N/A	N/A	N/A
UniRef90	UHGV-0047357_7	UniRef90_A0A374E958	63.2	0.0000000000126	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0047357_7	1232443.BAIA02000106_gene3117	70.9	0.000000000000014	N/A	N/A
structural_annotation	UHGV-0047357_7	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-0047357_8	K22299	66.6	5.5e-19	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0047357_8	phrog_8	70.5	3.4e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0047357_8	UniRef90_A0A412L7U4	197.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0047357_8	1111454.HMPREF1250_1028	94.7	1.36e-23	carbohydrate binding	N/A
PADLOC	UHGV-0047357_8	retron_type_VI_hth_cluster2_1	64.6	1.7e-18	N/A	Retron
Pfam	UHGV-0047357_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0047357_8	COG2390	N/A	N/A	DNA-binding transcriptional regulator LsrR, DeoR family	N/A
structural_annotation	UHGV-0047357_8	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0047357_9	K07729	60.2	5.2e-17	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0047357_9	phrog_8	51.0	0.000000000000033	transcriptional regulator	transcription regulation
UniRef90	UHGV-0047357_9	UniRef90_A0A412L7W1	106.0	1.52e-28	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0047357_9	1132442.KB889752_gene869	63.9	0.00000000000116	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0047357_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0047357_9	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
Pfam	UHGV-0047357_14	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
UniRef90	UHGV-0047357_15	UniRef90_UPI000C789166	79.7	5.45e-18	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0047357_16	COG1862	N/A	N/A	N/A	N/A
PHROG	UHGV-0047357_19	phrog_408	68.1	1.3e-19	N/A	unknown function
PHROG	UHGV-0047357_20	phrog_69	340.5	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0047357_20	UniRef90_A0A412L7W2	677.0	0	N/A	N/A
eggNOG-mapper	UHGV-0047357_20	1151292.QEW_2472	357.0	0	N/A	N/A
Pfam	UHGV-0047357_20	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-0047357_20	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0047357_20	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0047357_21	phrog_112	213.0	0	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0047357_21	UniRef90_A0A412UNI7	293.0	0	N/A	N/A
eggNOG-mapper	UHGV-0047357_21	1123288.SOV_6c00600	239.0	0	N/A	N/A
Pfam	UHGV-0047357_21	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-0047357_21	PF10991,MF_04153	N/A	N/A	N/A	N/A
KOfam	UHGV-0047357_22	K02334	912.1	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-0047357_22	phrog_17	419.5	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0047357_22	UniRef90_A0A412UNJ8	1192.0	0	POLAc domain-containing protein	N/A
eggNOG-mapper	UHGV-0047357_22	1274524.BSONL12_06038	766.0	0	DNA polymerase A domain	N/A
Pfam	UHGV-0047357_22	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-0047357_22	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-0047357_22	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-0047357_23	phrog_256	1070.5	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0047357_23	UniRef90_UPI001D06E26F	845.0	0	virulence-associated E family protein	N/A
eggNOG-mapper	UHGV-0047357_23	536232.CLM_2670	822.0	0	virulence-associated E family protein	N/A
Pfam	UHGV-0047357_23	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-0047357_23	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-0047357_23	PF05272,MF_04000,NF005477,NF040562,COG5545	N/A	N/A	N/A	N/A
PHROG	UHGV-0047357_24	phrog_93	75.1	1e-21	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0047357_24	UniRef90_A0A412UNG8	145.0	1.24716e-43	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0047357_24	879305.HMPREF9290_0155	95.5	1.49e-24	VRR_NUC	N/A
Pfam	UHGV-0047357_24	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0047357_24	PF08774,MF_00130,NF002584	N/A	N/A	N/A	N/A
KOfam	UHGV-0047357_25	K14440	125.2	8e-38	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0047357_25	phrog_62	417.0	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0047357_25	UniRef90_A0A412L7W0	853.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-0047357_25	97138.C820_00220	617.0	0	snf2 family	N/A
PADLOC	UHGV-0047357_25	ZorD1_00007	83.4	8.4e-25	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0047357_25	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0047357_25	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0047357_25	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0047357_25	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-0047357_27	phrog_98	81.4	1.1e-23	N/A	unknown function
UniRef90	UHGV-0047357_27	UniRef90_UPI00189E57B4	130.0	3.37e-36	YopX family protein	N/A
eggNOG-mapper	UHGV-0047357_27	563031.HMPREF0666_01127	77.4	2.27e-16	YopX protein	N/A
Pfam	UHGV-0047357_27	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-0047357_27	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0047357_28	phrog_10714	47.6	0.00000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0047357_28	742723.HMPREF9477_00922	71.6	0.00000000000000222	N/A	N/A
eggNOG-mapper	UHGV-0047357_30	1540257.JQMW01000004_gene433	50.8	0.0000026	N/A	N/A
structural_annotation	UHGV-0047357_30	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0047357_31	phrog_3634	121.6	8.2e-36	N/A	unknown function
eggNOG-mapper	UHGV-0047357_31	411459.RUMOBE_00941	195.0	0	COG NOG22561 non supervised orthologous group	N/A
COG	UHGV-0047357_31	COG0457	N/A	N/A	Tetratricopeptide (TPR) repeat	N/A
structural_annotation	UHGV-0047357_31	PF10137,MF_03036,TIGR03646,COG4271	N/A	N/A	N/A	N/A
PHROG	UHGV-0047357_32	phrog_309	146.8	5.32493e-44	terminase small subunit	head and packaging
UniRef90	UHGV-0047357_32	UniRef90_UPI001B3C9B19	213.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0047357_32	649747.HMPREF0083_05320	138.0	5.39e-40	transposase activity	N/A
COG	UHGV-0047357_32	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0047357_32	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-0047357_33	K06909	80.2	2.8e-23	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0047357_33	phrog_2	86.5	4.9e-25	terminase large subunit	head and packaging
UniRef90	UHGV-0047357_33	UniRef90_UPI00189AB5B3	860.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0047357_33	1304866.K413DRAFT_3034	612.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0047357_33	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0047357_33	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0047357_33	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0047357_34	phrog_533	324.5	0	portal protein	head and packaging
UniRef90	UHGV-0047357_34	UniRef90_UPI00189C53D6	818.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0047357_34	1304866.K413DRAFT_3035	476.0	0	N/A	N/A
structural_annotation	UHGV-0047357_34	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0047357_35	phrog_581	303.3	0	minor head protein	head and packaging
UniRef90	UHGV-0047357_35	UniRef90_UPI001897AC3D	926.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0047357_35	1449050.JNLE01000003_gene3892	358.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0047357_35	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0047357_35	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0047357_35	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0047357_37	phrog_194	100.7	1.9e-29	head scaffolding protein	head and packaging
UniRef90	UHGV-0047357_37	UniRef90_UPI0018995066	347.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0047357_37	742765.HMPREF9457_02126	166.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0047357_37	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0047357_37	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0047357_38	phrog_422	236.9	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0047357_38	693746.OBV_18090	386.0	0	N/A	N/A
structural_annotation	UHGV-0047357_38	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0047357_39	phrog_541	77.3	1.8e-22	head-tail adaptor	connector
eggNOG-mapper	UHGV-0047357_39	1449050.JNLE01000003_gene3888	82.4	1.16e-18	N/A	N/A
PHROG	UHGV-0047357_40	phrog_3366	63.4	3.1e-18	N/A	unknown function
Pfam	UHGV-0047357_40	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0047357_40	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0047357_41	phrog_556	119.8	7.5e-36	minor head protein	head and packaging
UniRef90	UHGV-0047357_41	UniRef90_UPI00189BC4F9	350.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0047357_41	1449050.JNLE01000003_gene3886	150.0	1.82169e-44	N/A	N/A
Pfam	UHGV-0047357_41	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0047357_41	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0047357_42	phrog_3266	97.2	1.3e-28	tail completion	connector
eggNOG-mapper	UHGV-0047357_42	1449050.JNLE01000003_gene3885	142.0	9.24997e-42	N/A	N/A
structural_annotation	UHGV-0047357_42	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0047357_43	phrog_3099	144.4	5.29691e-43	N/A	unknown function
eggNOG-mapper	UHGV-0047357_43	1160721.RBI_II00532	234.0	0	N/A	N/A
structural_annotation	UHGV-0047357_43	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0047357_44	phrog_11299	103.8	1.6e-30	N/A	unknown function
eggNOG-mapper	UHGV-0047357_44	1449050.JNLE01000003_gene3883	67.0	0.0000000000042	N/A	N/A
structural_annotation	UHGV-0047357_44	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0047357_45	phrog_706	129.7	2.1e-38	N/A	unknown function
UniRef90	UHGV-0047357_45	UniRef90_UPI001B3C82AE	256.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0047357_45	1160721.RBI_II00530	193.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0047357_45	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0047357_45	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0047357_47	phrog_1535	493.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0047357_47	UniRef90_A0A2N0ULX3	1141.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0047357_47	33035.JPJF01000093_gene2243	355.0	0	phage tail tape measure protein	N/A
COG	UHGV-0047357_47	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0047357_47	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0047357_48	phrog_1194	62.9	4.9e-18	N/A	unknown function
eggNOG-mapper	UHGV-0047357_48	397290.C810_05238	97.1	6.37e-24	N/A	N/A
Pfam	UHGV-0047357_48	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0047357_48	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0047357_49	phrog_18190	75.1	5.4e-31	N/A	unknown function
eggNOG-mapper	UHGV-0047357_49	483218.BACPEC_01143	77.0	0.00000000000316	N/A	N/A
structural_annotation	UHGV-0047357_49	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0047357_50	PF01664	N/A	N/A	N/A	N/A
COG	UHGV-0047357_52	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0047357	Yes	37,701	40	100	1
UHGV-0147067	No	40,152	40	100	1
UHGV-1415957	No	34,938	41	95	1
UHGV-0272164	No	28,251	41	77	1
UHGV-0005029	No	29,784	42	76	1
UHGV-1523083	No	23,658	40	64	1
UHGV-1426673	No	23,057	40	60	1
UHGV-0200707	No	15,224	41	41	1
UHGV-1777233	No	15,201	41	41	1
UHGV-1766407	No	15,134	41	39	1
UHGV-1624658	No	12,327	39	33	1
UHGV-1811556	No	12,801	41	33	1