Viral OTU vOTU-012366

vOTU: vOTU-012366

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-012366
Number of Genomes	2
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00478 → vGENUS-00461 → vSUBGEN-33636 → vOTU-012366
Host Lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales
Viral Lifestyle	temperate

Representative Genome
Genome ID	UHGV-0025236
Biosample ID	SAMEA4766018
Length	42,037 bps
CheckV Completeness	99.90% (High-quality)
CDS Count	62
CDS Density	94.94%
tRNA Count	0
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
Pfam	UHGV-0025236_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0025236_3	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0025236_4	K06400	269.9	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0025236_4	phrog_95	275.2	0	integrase	integration and excision
UniRef90	UHGV-0025236_4	UniRef90_A0A1C6HT72	386.0	0	Resolvase, N terminal domain	N/A
eggNOG-mapper	UHGV-0025236_4	357809.Cphy_2997	276.0	0	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
Pfam	UHGV-0025236_4	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0025236_4	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0025236_4	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0025236_4	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0025236_5	1408437.JNJN01000043_gene801	72.4	0.000000000000181	N/A	N/A
structural_annotation	UHGV-0025236_6	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0025236_7	phrog_16490	63.6	4.1e-18	N/A	unknown function
eggNOG-mapper	UHGV-0025236_7	476272.RUMHYD_01770	61.6	0.00000000644	N/A	N/A
PHROG	UHGV-0025236_8	phrog_22984	45.5	0.0000000000014	N/A	unknown function
UniRef90	UHGV-0025236_10	UniRef90_A0A8D9PDQ3	78.6	1.25e-17	ECF sigma factor	N/A
structural_annotation	UHGV-0025236_10	PF04545,MF_00674,NF009179,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0025236_11	phrog_22978	1176.5	0	N/A	unknown function
UniRef90	UHGV-0025236_11	UniRef90_A0A2V2FDI6	445.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0025236_11	1410650.JHWL01000003_gene2814	329.0	0	N/A	N/A
Pfam	UHGV-0025236_11	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
eggNOG-mapper	UHGV-0025236_12	1226322.HMPREF1545_00786	88.2	0.00000000000000146	N/A	N/A
Pfam	UHGV-0025236_13	PF07889	N/A	N/A	N/A	DUF1664
PHROG	UHGV-0025236_14	phrog_511	230.7	0	internal virion protein	head and packaging
UniRef90	UHGV-0025236_14	UniRef90_A0A8D9UH72	537.0	0	Stabilization protein (Fragment)	N/A
eggNOG-mapper	UHGV-0025236_14	1226322.HMPREF1545_00785	348.0	0	N/A	N/A
structural_annotation	UHGV-0025236_14	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0025236_15	phrog_12105	106.3	1.8e-31	N/A	unknown function
eggNOG-mapper	UHGV-0025236_15	1226322.HMPREF1545_03850	70.5	0.0000000000000641	N/A	N/A
KOfam	UHGV-0025236_16	K08640	96.8	2e-28	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0025236_16	phrog_18955	147.3	6.86636e-44	N/A	unknown function
UniRef90	UHGV-0025236_16	UniRef90_UPI001C035E39	612.0	0	D-Ala-D-Ala carboxypeptidase family metallohydrolase	N/A
eggNOG-mapper	UHGV-0025236_16	1235797.C816_04171	335.0	0	Peptidase M15	N/A
Pfam	UHGV-0025236_16	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
Pfam	UHGV-0025236_16	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0025236_16	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025236_16	PF09992,PF08291,COG4632,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-0025236_17	phrog_199	88.7	6e-26	holin	lysis
UniRef90	UHGV-0025236_17	UniRef90_K1UL76	276.0	0	Holin, toxin secretion/phage lysis	N/A
eggNOG-mapper	UHGV-0025236_17	411467.BACCAP_00280	138.0	8.3e-40	Bacteriophage holin family	N/A
Pfam	UHGV-0025236_17	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0025236_17	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0025236_17	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0025236_17	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0025236_20	phrog_10993	220.8	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0025236_20	UniRef90_K1UI43	375.0	0	N/A	N/A
eggNOG-mapper	UHGV-0025236_20	1121334.KB911071_gene1970	233.0	0	N/A	N/A
Pfam	UHGV-0025236_20	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0025236_20	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0025236_21	phrog_10993	182.3	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0025236_21	UniRef90_K1UI43	269.0	0	N/A	N/A
eggNOG-mapper	UHGV-0025236_21	742738.HMPREF9460_02534	150.0	1.87e-39	N/A	N/A
Pfam	UHGV-0025236_21	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0025236_21	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0025236_22	phrog_10993	211.7	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0025236_22	UniRef90_K1UI43	330.0	0	N/A	N/A
eggNOG-mapper	UHGV-0025236_22	1121334.KB911071_gene1970	209.0	0	N/A	N/A
Pfam	UHGV-0025236_22	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0025236_22	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0025236_25	phrog_1357	269.9	0	major head protein	head and packaging
UniRef90	UHGV-0025236_25	UniRef90_UPI001D02EBA7	466.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0025236_25	1203606.HMPREF1526_02746	360.0	0	N/A	N/A
Pfam	UHGV-0025236_25	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0025236_25	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0025236_25	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0025236_26	phrog_13908	241.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0025236_26	1410650.JHWL01000003_gene2831	103.0	8.3e-23	N/A	N/A
KOfam	UHGV-0025236_27	K07584	53.1	0.0000000000000031	N/A	N/A
PHROG	UHGV-0025236_27	phrog_4478	49.8	0.000000000000032	peptidase	other
UniRef90	UHGV-0025236_27	UniRef90_A0A7C6RDV5	63.5	0.000000000096	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0025236_27	273068.TTE0914	60.5	0.000000000243	Cysteine protease Prp	N/A
Pfam	UHGV-0025236_27	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0025236_27	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025236_27	PF04327,NF011125,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0025236_28	phrog_156	323.3	0	portal protein	head and packaging
UniRef90	UHGV-0025236_28	UniRef90_A0A8D9UH10	624.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0025236_28	748224.HMPREF9436_02547	506.0	0	N/A	N/A
structural_annotation	UHGV-0025236_28	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0025236_29	K06909	99.6	3.6e-29	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0025236_29	phrog_979	194.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0025236_29	UniRef90_UPI001D0245C4	753.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0025236_29	748224.HMPREF9436_01395	638.0	0	Terminase-like family	N/A
Pfam	UHGV-0025236_29	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0025236_29	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0025236_29	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0025236_30	UniRef90_U2R3C0	180.0	0	Nascent polypeptide-associated complex domain protein	N/A
eggNOG-mapper	UHGV-0025236_30	1226322.HMPREF1545_00042	180.0	0	N/A	N/A
structural_annotation	UHGV-0025236_30	PF13542	N/A	N/A	N/A	N/A
PHROG	UHGV-0025236_31	phrog_8	43.6	0.0000000000067	transcriptional regulator	transcription regulation
UniRef90	UHGV-0025236_31	UniRef90_A0A1C6J963	109.0	6.98e-30	Helix-turn-helix	N/A
Pfam	UHGV-0025236_31	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0025236_31	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0025236_35	phrog_22543	54.3	0.0000000000000022	N/A	unknown function
UniRef90	UHGV-0025236_35	UniRef90_A0A8D9PDK2	63.9	0.0000000000368	Zinc-ribbon containing domain	N/A
PHROG	UHGV-0025236_37	phrog_599	47.5	0.00000000000036	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0025236_37	UniRef90_A0A3R6D179	102.0	2.12e-26	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-0025236_37	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0025236_37	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-0025236_37	TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0025236_38	phrog_3136	133.1	8.7e-40	N/A	unknown function
UniRef90	UHGV-0025236_38	UniRef90_A0A3D0HBD2	131.0	1.4e-35	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0025236_38	642492.Clole_1416	56.2	0.0000000879	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0025236_38	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0025236_38	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0025236_39	phrog_38832	58.3	1.1e-16	N/A	unknown function
eggNOG-mapper	UHGV-0025236_39	665956.HMPREF1032_00143	62.4	0.000000000157	N/A	N/A
structural_annotation	UHGV-0025236_39	PF18358	N/A	N/A	N/A	N/A
PHROG	UHGV-0025236_41	phrog_757	172.8	0	DNA methyltransferase	other
UniRef90	UHGV-0025236_41	UniRef90_A0A3A6EPW1	271.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0025236_41	748224.HMPREF9436_03069	245.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0025236_41	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0025236_41	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0025236_43	K01160	66.4	7.2e-19	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0025236_43	phrog_140	119.7	2e-35	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025236_43	UniRef90_A0A7X9D805	115.0	1.84e-30	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0025236_43	1095750.HMPREF9970_1673	97.8	3.11e-24	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0025236_43	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0025236_43	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0025236_43	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0025236_46	phrog_15768	102.8	1.7e-32	N/A	unknown function
UniRef90	UHGV-0025236_46	UniRef90_A0A8D9PDU3	226.0	0	N/A	N/A
eggNOG-mapper	UHGV-0025236_46	203119.Cthe_2466	82.0	8.73e-16	N/A	N/A
AcrCatalog	UHGV-0025236_46	cluster_38323	83.2	1.65e-21	NA	N/A
Pfam	UHGV-0025236_46	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0025236_46	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0025236_47	K03111	143.4	2.29953e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0025236_47	phrog_44	142.2	3.09967e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025236_47	UniRef90_A0A1C5QDM6	206.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0025236_47	1226322.HMPREF1545_04080	206.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0025236_47	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0025236_47	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0025236_47	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0025236_47	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0025236_47	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0025236_48	phrog_7370	58.1	1.3e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025236_48	UniRef90_UPI001C122365	134.0	1.77e-38	HNH endonuclease	N/A
Pfam	UHGV-0025236_48	PF01844	N/A	N/A	HNH endonuclease	HNH
PHROG	UHGV-0025236_49	phrog_72	71.5	1.1e-20	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025236_49	UniRef90_A0A8D9PDS2	168.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0025236_49	445972.ANACOL_01825	147.0	8.51989e-43	N/A	N/A
Pfam	UHGV-0025236_49	PF05772	N/A	N/A	NinB protein	NinB
structural_annotation	UHGV-0025236_49	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0025236_50	phrog_155	121.8	6.1e-36	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025236_50	UniRef90_A0A3D1PJF8	231.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0025236_50	1304866.K413DRAFT_1196	201.0	0	ERF superfamily	N/A
Pfam	UHGV-0025236_50	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-0025236_50	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0025236_50	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0025236_51	phrog_253	84.3	1.6e-24	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0025236_51	UniRef90_A0A1C5N4H2	144.0	4.05003e-41	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-0025236_51	1410670.JHXF01000015_gene2268	93.6	4.53e-22	Siphovirus Gp157	N/A
Pfam	UHGV-0025236_51	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0025236_51	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0025236_52	phrog_4973	49.7	0.000000000000061	N/A	unknown function
UniRef90	UHGV-0025236_52	UniRef90_A0A3D3Y5F2	66.6	0.000000000000531	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0025236_52	935261.JAGL01000009_gene1175	46.2	0.00000867	Helix-turn-helix domain	N/A
Pfam	UHGV-0025236_52	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0025236_52	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0025236_54	PF14354,TIGR03655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0025236_58	UniRef90_A0A7X9BRV4	50.4	0.00000255	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0025236_58	411459.RUMOBE_01022	54.7	0.0000000102	sequence-specific DNA binding	N/A
Pfam	UHGV-0025236_58	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0025236_58	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0025236_58	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0025236_61	phrog_8	40.6	0.000000000051	transcriptional regulator	transcription regulation
UniRef90	UHGV-0025236_61	UniRef90_UPI0006850BB0	90.5	5.31e-21	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0025236_61	411460.RUMTOR_02056	53.9	0.000000212	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-0025236_61	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0025236_61	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0025236_61	PF01381,NF041951,COG3655	N/A	N/A	N/A	N/A

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0025236	Yes	42,037	56	100	1
UHGV-0026771	No	38,785	56	93	1