Viral OTU vOTU-018990

vOTU: vOTU-018990

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-018990
Number of Genomes	5
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00066 → vSUBFAM-03079 → vOTU-018990
Host Lineage	Bacteria → Bacteroidota → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes excrementavium
Viral Lifestyle	lytic

Representative Genome
Genome ID	UHGV-0066639
Biosample ID	N/A
Length	28,700 bps
CheckV Completeness	64.93% (Medium-quality)
CDS Count	38
CDS Density	87.85%
tRNA Count	0
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 64.93)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0066639_1	K02470	168.0	0	gyrB; DNA gyrase subunit B [EC:5.6.2.2]	N/A
PHROG	UHGV-0066639_1	phrog_543	86.1	3.5e-25	DNA topoisomerase II large subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0066639_1	UniRef90_A0A359G5G4	210.0	0	DNA topoisomerase (ATP-hydrolyzing) (Fragment)	N/A
eggNOG-mapper	UHGV-0066639_1	1203611.KB894544_gene2199	212.0	0	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner	N/A
Pfam	UHGV-0066639_1	PF21249	N/A	N/A	GyrB, hook	GyrB_hook
Pfam	UHGV-0066639_1	PF00986	N/A	N/A	DNA gyrase B subunit, carboxyl terminus	DNA_gyraseB_C
COG	UHGV-0066639_1	COG0187	N/A	N/A	DNA gyrase/topoisomerase IV, subunit B	N/A
structural_annotation	UHGV-0066639_1	PF00986	N/A	N/A	N/A	N/A
KOfam	UHGV-0066639_2	K00876	271.0	0	udk, UCK; uridine kinase [EC:2.7.1.48]	N/A
UniRef90	UHGV-0066639_2	UniRef90_A0A143XVS9	405.0	0	Uridine kinase	N/A
eggNOG-mapper	UHGV-0066639_2	679935.Alfi_3038	370.0	0	Cytidine monophosphokinase	N/A
Pfam	UHGV-0066639_2	PF00485	N/A	N/A	Phosphoribulokinase / Uridine kinase family	PRK
NCBIFam	UHGV-0066639_2	NF004018.0	N/A	N/A	uridine kinase	N/A
COG	UHGV-0066639_2	COG0572	N/A	N/A	Uridine kinase	N/A
UniRef90	UHGV-0066639_3	UniRef90_UPI001EDC387B	77.0	0.0000000000000156	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0066639_3	470145.BACCOP_03758	111.0	4.97e-28	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
COG	UHGV-0066639_3	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
PHROG	UHGV-0066639_4	phrog_16858	45.9	0.00000000000084	N/A	unknown function
UniRef90	UHGV-0066639_4	UniRef90_A0A3D1NSS9	83.2	6.92e-20	ArsR family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0066639_4	1121101.HMPREF1532_03604	51.2	0.0000000587	N/A	N/A
PHROG	UHGV-0066639_5	phrog_130	154.8	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0066639_5	UniRef90_A0A143XNK7	319.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0066639_5	1123058.KB894230_gene1175	146.0	1.07998e-41	BRO family, N-terminal domain	N/A
Pfam	UHGV-0066639_5	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-0066639_5	COG3617	N/A	N/A	Prophage antirepressor	N/A
PHROG	UHGV-0066639_8	phrog_310	298.4	0	transposase	integration and excision
UniRef90	UHGV-0066639_8	UniRef90_A0A143XRB0	1363.0	0	Integrase core domain protein	N/A
eggNOG-mapper	UHGV-0066639_8	709991.Odosp_0824	608.0	0	Transposase and inactivated derivatives	N/A
Pfam	UHGV-0066639_8	PF09299	N/A	N/A	Mu transposase, C-terminal	Mu-transpos_C
COG	UHGV-0066639_8	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
structural_annotation	UHGV-0066639_8	PF02914,PF09039,PF09299,NF033594,COG2801	N/A	N/A	N/A	N/A
PHROG	UHGV-0066639_9	phrog_296	113.7	2.4e-33	DNA transposition protein	integration and excision
UniRef90	UHGV-0066639_9	UniRef90_A0A143XT51	578.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0066639_9	1122989.KB898603_gene89	299.0	0	AAA domain	N/A
Pfam	UHGV-0066639_9	PF13401	N/A	N/A	AAA domain	AAA_22
COG	UHGV-0066639_9	COG2842	N/A	N/A	Bacteriophage DNA transposition protein, AAA+ family ATPase	N/A
structural_annotation	UHGV-0066639_9	PF13401,MF_01509,TIGR03015,TIGR03070,COG2842	N/A	N/A	N/A	N/A
PHROG	UHGV-0066639_10	phrog_6891	227.2	0	ATPase	other
UniRef90	UHGV-0066639_10	UniRef90_A0A143XR48	415.0	0	DNA repair protein RadA	N/A
eggNOG-mapper	UHGV-0066639_10	1235813.JCM10003_621	247.0	0	ATP-dependent serine protease	N/A
Pfam	UHGV-0066639_10	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0066639_10	COG1066	N/A	N/A	DNA repair protein RadA/Sms, contains AAA+ ATPase domain	N/A
structural_annotation	UHGV-0066639_10	PF03796,MF_01498,TIGR00416,COG1066	N/A	N/A	N/A	N/A
PHROG	UHGV-0066639_11	phrog_355	75.2	8.7e-22	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0066639_11	UniRef90_UPI001B3A6A86	154.0	0	N/A	N/A
eggNOG-mapper	UHGV-0066639_11	1127692.HMPREF9075_00061	100.0	6.18e-26	N/A	N/A
Pfam	UHGV-0066639_11	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0066639_11	PF14359,MF_03036,TIGR02133,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0066639_12	phrog_14123	161.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0066639_12	1236497.BAJQ01000020_gene1870	113.0	1.39e-29	N/A	N/A
eggNOG-mapper	UHGV-0066639_13	411470.RUMGNA_02189	72.0	0.00000000000176	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
COG	UHGV-0066639_13	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-0066639_13	MF_01691,TIGR03532,COG2171	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0066639_14	411470.RUMGNA_02189	72.0	0.00000000000176	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
COG	UHGV-0066639_14	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-0066639_14	MF_01691,TIGR03532,COG2171	N/A	N/A	N/A	N/A
KOfam	UHGV-0066639_15	K00558	174.3	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0066639_15	phrog_363	233.3	0	DNA methyltransferase	other
UniRef90	UHGV-0066639_15	UniRef90_A0A374A0C9	399.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-0066639_15	445970.ALIPUT_01612	379.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0066639_15	MTase_II_00058	159.8	0	Type II methyltransferase	RM
Pfam	UHGV-0066639_15	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0066639_15	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0066639_15	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0066639_15	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0066639_17	phrog_874	109.0	3.8e-32	N/A	unknown function
eggNOG-mapper	UHGV-0066639_17	762968.HMPREF9441_00541	170.0	0	N/A	N/A
structural_annotation	UHGV-0066639_17	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
PHROG	UHGV-0066639_18	phrog_21498	285.9	0	N/A	unknown function
UniRef90	UHGV-0066639_18	UniRef90_UPI0016246E09	235.0	0	chromosome partitioning protein ParB	N/A
eggNOG-mapper	UHGV-0066639_18	445970.ALIPUT_01611	262.0	0	DNA binding	N/A
COG	UHGV-0066639_18	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0066639_18	PF05869,TIGR01712	N/A	N/A	N/A	N/A
PHROG	UHGV-0066639_20	phrog_846	129.0	3.2e-38	N/A	unknown function
UniRef90	UHGV-0066639_20	UniRef90_UPI001B3A6488	311.0	0	N/A	N/A
eggNOG-mapper	UHGV-0066639_20	1235813.JCM10003_625	197.0	0	N/A	N/A
Pfam	UHGV-0066639_20	PF11363	N/A	N/A	N/A	DUF3164
structural_annotation	UHGV-0066639_20	PF11363	N/A	N/A	N/A	N/A
UniRef90	UHGV-0066639_21	UniRef90_UPI0013EB7079	152.0	4.91996e-42	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0066639_21	1227272.HMPREF1556_00727	58.2	0.000000246	Bacterial Ig-like domain (group 2)	N/A
COG	UHGV-0066639_21	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0066639_21	PF02368,PF07467,NF005261	N/A	N/A	N/A	N/A
PHROG	UHGV-0066639_22	phrog_130	142.3	3.80032e-42	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0066639_22	UniRef90_A0A143XX02	477.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0066639_22	1122983.BAJY01000001_gene211	164.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0066639_22	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-0066639_22	COG3617	N/A	N/A	Prophage antirepressor	N/A
PHROG	UHGV-0066639_25	phrog_17154	127.8	2.4e-38	N/A	unknown function
UniRef90	UHGV-0066639_25	UniRef90_UPI001B39F684	135.0	9.3e-40	transposase	N/A
eggNOG-mapper	UHGV-0066639_25	1121098.HMPREF1534_03376	114.0	3.26e-32	N/A	N/A
PHROG	UHGV-0066639_26	phrog_6911	133.1	1.2e-39	N/A	unknown function
eggNOG-mapper	UHGV-0066639_26	1203550.HMPREF1475_00585	127.0	1.49e-35	N/A	N/A
structural_annotation	UHGV-0066639_26	PF09646,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0066639_27	phrog_26	64.3	2.7e-18	tail completion or Neck1 protein	connector
UniRef90	UHGV-0066639_27	UniRef90_A0A143XV78	380.0	0	Phage virion morphogenesis family protein	N/A
eggNOG-mapper	UHGV-0066639_27	1121098.HMPREF1534_03374	182.0	0	Phage virion morphogenesis	N/A
Pfam	UHGV-0066639_27	PF05069	N/A	N/A	Phage virion morphogenesis family	Phage_tail_S
COG	UHGV-0066639_27	COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0066639_27	PF05069,TIGR01635,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0066639_28	phrog_19194	241.8	0	N/A	unknown function
UniRef90	UHGV-0066639_28	UniRef90_A0A143Y058	723.0	0	Phage Mu protein F like protein	N/A
eggNOG-mapper	UHGV-0066639_28	1121098.HMPREF1534_00291	324.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-0066639_28	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
COG	UHGV-0066639_28	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0066639_28	PF18798,PF04233,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0066639_29	phrog_35074	193.9	0	N/A	unknown function
UniRef90	UHGV-0066639_29	UniRef90_UPI001B3A3E48	634.0	0	N/A	N/A
eggNOG-mapper	UHGV-0066639_29	1122971.BAME01000043_gene3754	387.0	0	N/A	N/A
Pfam	UHGV-0066639_29	PF06074	N/A	N/A	N/A	DUF935
COG	UHGV-0066639_29	COG4383	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0066639_29	PF06074,MF_04135,TIGR01537,COG4383	N/A	N/A	N/A	N/A
PHROG	UHGV-0066639_30	phrog_195	62.5	8e-18	head-tail adaptor	connector
UniRef90	UHGV-0066639_30	UniRef90_UPI001B3A79A5	221.0	0	N/A	N/A
eggNOG-mapper	UHGV-0066639_30	888743.HMPREF9141_2828	182.0	0	N/A	N/A
Pfam	UHGV-0066639_30	PF07030	N/A	N/A	Bacteriophage Mu, Gp36	Phage_Mu_Gp36
COG	UHGV-0066639_30	COG4387	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0066639_30	PF07030,COG4387	N/A	N/A	N/A	N/A
PHROG	UHGV-0066639_31	phrog_38	132.9	2.5e-39	terminase large subunit	head and packaging
eggNOG-mapper	UHGV-0066639_31	585502.HMPREF0645_2509	562.0	0	N/A	N/A
COG	UHGV-0066639_31	COG5362	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0066639_31	PF17289,PF03237,MF_04147,NF033889,COG5323	N/A	N/A	N/A	N/A
PHROG	UHGV-0066639_32	phrog_4151	133.2	1.4e-39	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0066639_32	UniRef90_A0A143XYA0	285.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0066639_32	742727.HMPREF9447_01706	157.0	0	N/A	N/A
COG	UHGV-0066639_32	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0066639_32	PF06056	N/A	N/A	N/A	N/A
KOfam	UHGV-0066639_33	K01358	139.5	3.09995e-41	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0066639_33	phrog_2976	260.1	0	head maturation protease	head and packaging
UniRef90	UHGV-0066639_33	UniRef90_A0A143XXV0	601.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0066639_33	1235813.JCM10003_644	238.0	0	N/A	N/A
Pfam	UHGV-0066639_33	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0066639_33	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0066639_33	PF00574,PF10123,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0066639_34	phrog_11320	320.3	0	N/A	unknown function
UniRef90	UHGV-0066639_34	UniRef90_UPI001B3A4CE0	575.0	0	BACON domain-containing protein	N/A
eggNOG-mapper	UHGV-0066639_34	457424.BFAG_01447	340.0	0	N/A	N/A
structural_annotation	UHGV-0066639_34	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0066639_35	K02395	86.0	6.6e-25	flgJ; peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-0066639_35	phrog_3513	94.7	1e-27	endolysin	lysis
UniRef90	UHGV-0066639_35	UniRef90_A0A143XW98	351.0	0	Peptidoglycan hydrolase FlgJ	N/A
eggNOG-mapper	UHGV-0066639_35	1203611.KB894547_gene2602	208.0	0	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-0066639_35	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
COG	UHGV-0066639_35	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-0066639_35	PF01832,TIGR02541,COG1705	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0066639_36	1121098.HMPREF1534_01968	72.0	0.000000000000374	N/A	N/A
PHROG	UHGV-0066639_37	phrog_6767	108.7	3.6e-32	N/A	unknown function
eggNOG-mapper	UHGV-0066639_37	1121098.HMPREF1534_01967	245.0	0	N/A	N/A
structural_annotation	UHGV-0066639_37	PF14874,PF10618,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0066639_38	phrog_14983	121.1	7.2e-36	N/A	unknown function
eggNOG-mapper	UHGV-0066639_38	1122971.BAME01000043_gene3765	126.0	8.58e-35	N/A	N/A
structural_annotation	UHGV-0066639_38	PF06894,TIGR01674	N/A	N/A	N/A	N/A

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0066639	Yes	28,700	56	65	1
UHGV-2108248	No	24,567	58	56	1
UHGV-0111866	No	21,482	59	49	1
UHGV-1346741	No	11,208	59	25	1
UHGV-2174393	No	10,076	60	23	1