Viral OTU vOTU-019818

vOTU: vOTU-019818

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-019818
Number of Genomes	5
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00010 → vSUBFAM-00662 → vGENUS-03088 → vOTU-019818
Host Lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans
Viral Lifestyle	temperate

Representative Genome
Genome ID	UHGV-0182076
Biosample ID	SAMEA2737659
Length	27,988 bps
CheckV Completeness	79.08% (Medium-quality)
CDS Count	39
CDS Density	92.76%
tRNA Count	0
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 79.08)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0182076_1	phrog_1194	87.9	8.4e-26	N/A	unknown function
eggNOG-mapper	UHGV-0182076_1	1160721.RBI_II00527	210.0	0	N/A	N/A
structural_annotation	UHGV-0182076_1	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0182076_2	phrog_1535	274.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0182076_2	UniRef90_R6TDK7	1276.0	0	Phage-related protein-like protein	N/A
eggNOG-mapper	UHGV-0182076_2	1226322.HMPREF1545_00059	404.0	0	tape measure	N/A
COG	UHGV-0182076_2	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0182076_2	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0182076_3	phrog_706	147.6	6.44597e-44	N/A	unknown function
UniRef90	UHGV-0182076_3	UniRef90_UPI001B3C82AE	209.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0182076_3	1449050.JNLE01000003_gene3882	196.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0182076_3	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0182076_3	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0182076_4	phrog_11299	178.9	0	N/A	unknown function
structural_annotation	UHGV-0182076_4	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0182076_5	phrog_3099	148.9	2.24208e-44	N/A	unknown function
eggNOG-mapper	UHGV-0182076_5	1160721.RBI_II00532	206.0	0	N/A	N/A
structural_annotation	UHGV-0182076_5	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0182076_6	phrog_3266	123.4	9.7e-37	tail completion	connector
eggNOG-mapper	UHGV-0182076_6	411902.CLOBOL_00130	112.0	1.08e-29	N/A	N/A
structural_annotation	UHGV-0182076_6	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0182076_7	phrog_556	122.4	1.5e-36	minor head protein	head and packaging
UniRef90	UHGV-0182076_7	UniRef90_UPI00143BEF55	124.0	6.89e-34	minor capsid protein	N/A
eggNOG-mapper	UHGV-0182076_7	1449050.JNLE01000003_gene3886	107.0	1.28e-27	N/A	N/A
Pfam	UHGV-0182076_7	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0182076_7	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0182076_8	phrog_3366	76.9	2.2e-23	N/A	unknown function
eggNOG-mapper	UHGV-0182076_8	1449050.JNLE01000003_gene3887	82.8	7.73e-19	N/A	N/A
Pfam	UHGV-0182076_8	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0182076_8	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0182076_9	phrog_541	92.9	2.6e-27	head-tail adaptor	connector
UniRef90	UHGV-0182076_9	UniRef90_A0A371AQT0	103.0	4.98e-26	N/A	N/A
eggNOG-mapper	UHGV-0182076_9	1304866.K413DRAFT_3039	95.5	9.97e-24	N/A	N/A
PHROG	UHGV-0182076_10	phrog_544	347.5	0	major head protein	head and packaging
UniRef90	UHGV-0182076_10	UniRef90_R6T873	667.0	0	Major head protein	N/A
eggNOG-mapper	UHGV-0182076_10	936580.HMPREF1516_0718	319.0	0	N/A	N/A
NCBIFam	UHGV-0182076_10	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0182076_10	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0182076_11	phrog_194	101.9	7e-30	head scaffolding protein	head and packaging
UniRef90	UHGV-0182076_11	UniRef90_R6U550	377.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0182076_11	742765.HMPREF9457_02126	154.0	8.40779e-45	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0182076_11	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0182076_11	PF06810	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0182076_12	PF12305	N/A	N/A	N/A	N/A
PHROG	UHGV-0182076_13	phrog_581	335.5	0	minor head protein	head and packaging
UniRef90	UHGV-0182076_13	UniRef90_R6SXL7	988.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0182076_13	658655.HMPREF0988_02563	406.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0182076_13	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0182076_13	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0182076_13	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0182076_14	phrog_533	346.7	0	portal protein	head and packaging
UniRef90	UHGV-0182076_14	UniRef90_R6TDI6	889.0	0	Phage portal protein SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-0182076_14	1304866.K413DRAFT_3035	438.0	0	N/A	N/A
structural_annotation	UHGV-0182076_14	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0182076_15	K06909	423.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0182076_15	phrog_18557	160.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0182076_15	UniRef90_A0A1C6IMR2	1096.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0182076_15	411461.DORFOR_01162	664.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0182076_15	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0182076_15	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0182076_15	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0182076_15	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0182076_15	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0182076_16	K09161	141.1	7.19987e-42	N/A	N/A
PHROG	UHGV-0182076_16	phrog_6084	100.5	1.5e-29	N/A	unknown function
UniRef90	UHGV-0182076_16	UniRef90_UPI00189BAEC5	346.0	0	YfbU family protein	N/A
eggNOG-mapper	UHGV-0182076_16	536233.CLO_2529	116.0	1.33e-30	Belongs to the UPF0304 family	N/A
Pfam	UHGV-0182076_16	PF03887	N/A	N/A	YfbU domain	YfbU
NCBIFam	UHGV-0182076_16	NF003936.2	N/A	N/A	YfbU family protein	N/A
COG	UHGV-0182076_16	COG3013	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0182076_16	PF03887,MF_00762,NF003936,COG3013	N/A	N/A	N/A	N/A
UniRef90	UHGV-0182076_17	UniRef90_A0A373VND1	241.0	0	Sigma-70 family RNA polymerase sigma factor	N/A
structural_annotation	UHGV-0182076_17	PF07374	N/A	N/A	N/A	N/A
PHROG	UHGV-0182076_18	phrog_25754	89.4	1.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-0182076_18	97139.C824_00736	90.5	2.48e-22	N/A	N/A
structural_annotation	UHGV-0182076_18	PF10842,MF_00436,TIGR02383	N/A	N/A	N/A	N/A
PHROG	UHGV-0182076_19	phrog_986	80.7	1.4e-23	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0182076_19	UniRef90_A0A373XQS7	189.0	0	N/A	N/A
eggNOG-mapper	UHGV-0182076_19	2754.EH55_06950	67.4	0.000000000000276	N/A	N/A
Pfam	UHGV-0182076_19	PF12961	N/A	N/A	N/A	DUF3850
structural_annotation	UHGV-0182076_19	PF12961,MF_00684,NF003443,COG4043	N/A	N/A	N/A	N/A
PHROG	UHGV-0182076_21	phrog_824	125.8	1.7e-37	N/A	unknown function
UniRef90	UHGV-0182076_21	UniRef90_A0A373V639	248.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0182076_21	641107.CDLVIII_1315	102.0	1.83e-26	VRR-NUC domain	N/A
Pfam	UHGV-0182076_21	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0182076_21	PF08774	N/A	N/A	N/A	N/A
KOfam	UHGV-0182076_22	K17677	418.5	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0182076_22	phrog_16	250.2	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0182076_22	UniRef90_A0A373V5W0	1009.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-0182076_22	742738.HMPREF9460_02499	643.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0182076_22	mREase_IV_00005	114.8	7.3e-34	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0182076_22	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0182076_22	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0182076_22	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0182076_22	PF04851,PF16203,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0182076_23	phrog_8841	489.8	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0182076_23	UniRef90_A0A1C6FHQ3	1271.0	0	Superfamily II helicase and inactivated derivatives	N/A
eggNOG-mapper	UHGV-0182076_23	742738.HMPREF9460_02495	612.0	0	N/A	N/A
Pfam	UHGV-0182076_23	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0182076_23	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0182076_23	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0182076_23	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-0182076_24	K03111	55.0	0.0000000000000021	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0182076_24	phrog_44	53.2	0.0000000000000087	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0182076_24	UniRef90_A0A1C6FIL5	280.0	0	Helix-destabilizing protein	N/A
eggNOG-mapper	UHGV-0182076_24	1121370.AQUY01000001_gene1006	55.1	0.000000143	Single-strand binding protein family	N/A
Pfam	UHGV-0182076_24	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-0182076_24	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0182076_24	PF00436,MF_00984,TIGR04418,COG2965	N/A	N/A	N/A	N/A
PHROG	UHGV-0182076_25	phrog_3657	352.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0182076_25	1121864.OMO_02139	235.0	0	N/A	N/A
KOfam	UHGV-0182076_26	K10906	105.5	4e-37	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	N/A
PHROG	UHGV-0182076_26	phrog_412	270.5	0	exonuclease VIII	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0182076_26	UniRef90_A0A1C6FHM2	529.0	0	Exodeoxyribonuclease 8	N/A
eggNOG-mapper	UHGV-0182076_26	1454004.AW11_02382	193.0	0	N/A	N/A
Pfam	UHGV-0182076_26	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-0182076_26	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0182076_26	PF12684,MF_03030,TIGR01896,COG2887	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0182076_34	PF01775,MF_00273,NF010188	N/A	N/A	N/A	N/A
PHROG	UHGV-0182076_35	phrog_1305	147.7	5.04467e-44	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0182076_35	UniRef90_A0A373SN33	471.0	0	N/A	N/A
eggNOG-mapper	UHGV-0182076_35	445974.CLORAM_02962	191.0	0	N/A	N/A
structural_annotation	UHGV-0182076_35	COG2250	N/A	N/A	N/A	N/A
UniRef90	UHGV-0182076_36	UniRef90_R6TEQ2	142.0	2.67648e-43	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0182076_36	246199.CUS_5910	120.0	4.55e-35	N/A	N/A
structural_annotation	UHGV-0182076_36	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0182076_37	K01356	123.2	3.2e-36	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0182076_37	phrog_4	137.8	8.60005e-41	transcriptional repressor	transcription regulation
UniRef90	UHGV-0182076_37	UniRef90_R6T2B0	433.0	0	Peptidase S24-like protein	N/A
eggNOG-mapper	UHGV-0182076_37	246199.CUS_5911	234.0	0	N/A	N/A
Pfam	UHGV-0182076_37	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
Pfam	UHGV-0182076_37	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0182076_37	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0182076_37	PF00717,PF12844,MF_00015,TIGR00498,TIGR03070,COG1974,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0182076_38	phrog_10292	54.3	4.8e-16	N/A	unknown function
UniRef90	UHGV-0182076_38	UniRef90_R6T9F1	270.0	0	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0182076_38	537013.CLOSTMETH_02269	85.5	1.56e-19	TM2 domain	N/A
Pfam	UHGV-0182076_38	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-0182076_38	COG2314	N/A	N/A	N/A	N/A
KOfam	UHGV-0182076_39	K06400	354.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0182076_39	phrog_95	348.9	0	integrase	integration and excision
UniRef90	UHGV-0182076_39	UniRef90_A0A3D4JJV8	420.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0182076_39	537013.CLOSTMETH_01697	417.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0182076_39	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0182076_39	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0182076_39	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0182076_39	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0182076_39	PF00239,PF07508,PF13408,NF041201,COG1961	N/A	N/A	N/A	N/A

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0182076	Yes	27,988	46	79	1
UHGV-0160328	No	20,779	45	61	1
UHGV-1521456	No	20,779	45	61	1
UHGV-0013969	No	20,352	44	60	1
UHGV-2020508	No	11,536	45	34	1