Viral OTU vOTU-024521

vOTU: vOTU-024521

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-024521
Number of Genomes	3
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vOTU-024521
Host Lineage
Viral Lifestyle	lytic

Representative Genome
Genome ID	UHGV-1049248
Biosample ID	SAMN07646504
Length	30,794 bps
CheckV Completeness	84.13% (Medium-quality)
CDS Count	47
CDS Density	95.22%
tRNA Count	0
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 84.13)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1049248_3	phrog_434	282.0	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1049248_3	UniRef90_UPI0006B43CFD	260.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-1049248_3	525255.HMPREF0077_0419	228.0	0	YqaJ-like viral recombinase domain	N/A
Pfam	UHGV-1049248_3	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1049248_3	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1049248_3	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1049248_3	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-1049248_4	K07455	306.6	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1049248_4	phrog_148	288.4	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1049248_4	UniRef90_UPI0006B4EE74	359.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-1049248_4	1121947.AUHK01000002_gene917	314.0	0	RecT family	N/A
Pfam	UHGV-1049248_4	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1049248_4	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1049248_4	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1049248_4	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-1049248_5	K07451	44.2	0.0000000000036	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-1049248_5	phrog_2562	92.3	6.9e-27	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1049248_5	UniRef90_UPI000A10CDA8	169.0	0	N/A	N/A
eggNOG-mapper	UHGV-1049248_5	511437.Lbuc_1442	160.0	1.4013e-45	N/A	N/A
Pfam	UHGV-1049248_5	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
Pfam	UHGV-1049248_5	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1049248_5	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
KOfam	UHGV-1049248_8	K01160	59.4	1.1e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1049248_8	phrog_140	134.5	5.8e-40	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1049248_8	UniRef90_UPI000833193D	248.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1049248_8	195103.CPF_0942	110.0	2.3e-29	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1049248_8	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1049248_8	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1049248_8	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1049248_9	K03427	163.6	0	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-1049248_9	phrog_6380	182.3	0	DNA methyltransferase	other
UniRef90	UHGV-1049248_9	UniRef90_UPI0005629965	172.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-1049248_9	1313301.AUGC01000002_gene1900	166.0	3.50325e-44	type I restriction-modification system	N/A
PADLOC	UHGV-1049248_9	MTase_I_00005	180.9	0	Type I methyltransferase	RM
Pfam	UHGV-1049248_9	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-1049248_9	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
KOfam	UHGV-1049248_10	K03427	46.8	0.00000000000037	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-1049248_10	phrog_1071	143.8	7.39886e-43	DNA methyltransferase	other
UniRef90	UHGV-1049248_10	UniRef90_UPI0018A15675	112.0	3.93e-27	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-1049248_10	1278971.AOGF01000034_gene1772	108.0	2.9e-26	site-specific DNA-methyltransferase (adenine-specific) activity	N/A
Pfam	UHGV-1049248_10	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-1049248_10	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
UniRef90	UHGV-1049248_11	UniRef90_UPI0005CCA1A4	67.0	0.00000000000916	restriction endonuclease subunit S	N/A
eggNOG-mapper	UHGV-1049248_11	592010.GCWU000182_001449	65.9	0.00000000000403	Type I restriction modification DNA specificity domain	N/A
PHROG	UHGV-1049248_12	phrog_36	71.2	1.9e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-1049248_12	UniRef90_UPI00138E09F6	83.6	6.78e-18	ECF-type sigma factor	N/A
Pfam	UHGV-1049248_12	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
COG	UHGV-1049248_12	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
PHROG	UHGV-1049248_13	phrog_1281	131.3	4.1e-39	N/A	unknown function
UniRef90	UHGV-1049248_13	UniRef90_UPI0006B6530D	253.0	0	N/A	N/A
eggNOG-mapper	UHGV-1049248_13	875454.BAEW01000002_gene485	176.0	0	N/A	N/A
Pfam	UHGV-1049248_13	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-1049248_13	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1049248_13	PF13274,COG3600	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1049248_14	875454.BAEW01000002_gene484	113.0	9.69e-29	N/A	N/A
PHROG	UHGV-1049248_15	phrog_2538	96.0	3.1e-28	terminase small subunit	head and packaging
UniRef90	UHGV-1049248_15	UniRef90_UPI0008346AA2	204.0	0	phBC6A51 family helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1049248_15	279808.SH2359	84.7	2.05e-19	N/A	N/A
Pfam	UHGV-1049248_15	PF13022	N/A	N/A	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
structural_annotation	UHGV-1049248_15	PF13022,COG3677	N/A	N/A	N/A	N/A
PHROG	UHGV-1049248_16	phrog_38	155.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-1049248_16	UniRef90_UPI00166CA12B	444.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1049248_16	1140001.I571_01829	439.0	0	N/A	N/A
structural_annotation	UHGV-1049248_16	PF17289,PF05876,MF_04147,NF033889,COG5323	N/A	N/A	N/A	N/A
PHROG	UHGV-1049248_17	phrog_64	386.3	0	portal protein	head and packaging
UniRef90	UHGV-1049248_17	UniRef90_UPI000835C042	739.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1049248_17	1347392.CCEZ01000005_gene1230	452.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1049248_17	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-1049248_17	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-1049248_17	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-1049248_18	phrog_115	268.2	0	minor head protein	head and packaging
UniRef90	UHGV-1049248_18	UniRef90_UPI000831AD37	613.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1049248_18	1120978.KB894087_gene432	210.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-1049248_18	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-1049248_18	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1049248_18	COG2369	N/A	N/A	N/A	N/A
UniRef90	UHGV-1049248_19	UniRef90_UPI0002D2AA00	70.9	0.000000000000013	N/A	N/A
eggNOG-mapper	UHGV-1049248_19	1027396.LMOSA_10410	52.0	0.0000000716	N/A	N/A
PHROG	UHGV-1049248_20	phrog_172	125.5	5e-37	head scaffolding protein	head and packaging
UniRef90	UHGV-1049248_20	UniRef90_A0A847D8L3	181.0	0	N/A	N/A
eggNOG-mapper	UHGV-1049248_20	1347392.CCEZ01000005_gene1235	157.0	0	N/A	N/A
Pfam	UHGV-1049248_20	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1049248_20	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1049248_21	phrog_544	167.8	0	major head protein	head and packaging
UniRef90	UHGV-1049248_21	UniRef90_A0A847D7U9	318.0	0	Big_12 domain-containing protein	N/A
eggNOG-mapper	UHGV-1049248_21	1232430.CAVG010000113_gene1021	307.0	0	N/A	N/A
structural_annotation	UHGV-1049248_21	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1049248_22	phrog_132	56.1	6.7e-16	head-tail adaptor	connector
UniRef90	UHGV-1049248_22	UniRef90_UPI000831BF2E	195.0	0	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-1049248_22	1120978.KB894087_gene438	71.6	0.0000000000000145	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-1049248_22	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-1049248_22	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-1049248_23	phrog_348	52.4	0.000000000000011	minor head protein	head and packaging
eggNOG-mapper	UHGV-1049248_23	1158609.I586_00086	53.9	0.000000058	N/A	N/A
structural_annotation	UHGV-1049248_23	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1049248_24	phrog_5	71.7	1.7e-20	tail completion or Neck1 protein	connector
UniRef90	UHGV-1049248_24	UniRef90_UPI00096AD009	200.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1049248_24	476272.RUMHYD_02858	94.0	2.1e-23	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1049248_24	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1049248_24	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1049248_24	PF05069,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1049248_25	phrog_176	59.5	6.6e-17	tail terminator	connector
UniRef90	UHGV-1049248_25	UniRef90_UPI00082F8614	88.2	6.05e-20	N/A	N/A
eggNOG-mapper	UHGV-1049248_25	1423724.BAMM01000023_gene1906	78.2	7.71e-17	N/A	N/A
structural_annotation	UHGV-1049248_25	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-1049248_26	phrog_238	167.1	0	major tail protein	tail
UniRef90	UHGV-1049248_26	UniRef90_UPI00082E270F	313.0	0	phage major tail protein, TP901-1 family	N/A
eggNOG-mapper	UHGV-1049248_26	35241.Q38612_BPTU2	132.0	4.49e-37	Phage major tail protein 2	N/A
Pfam	UHGV-1049248_26	PF06199	N/A	N/A	Phage tail tube protein	Phage_tail_2
NCBIFam	UHGV-1049248_26	TIGR02126.1	N/A	N/A	phage major tail protein, TP901-1 family	N/A
structural_annotation	UHGV-1049248_26	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1049248_27	phrog_183	64.8	1.5e-18	tail chaperone protein	tail
UniRef90	UHGV-1049248_27	UniRef90_O34069	94.7	1.17e-22	ORF38	N/A
eggNOG-mapper	UHGV-1049248_27	85154.O34069_BPO12	94.7	1.97e-23	Pfam:Phage_TAC_12	N/A
Pfam	UHGV-1049248_27	PF12363	N/A	N/A	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
structural_annotation	UHGV-1049248_27	PF12363	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1049248_28	1139219.I569_01371	59.7	0.000000000177	N/A	N/A
PHROG	UHGV-1049248_29	phrog_1533	435.6	0	tail length tape measure protein	tail
UniRef90	UHGV-1049248_29	UniRef90_UPI00082B78B3	1306.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1049248_29	59241.TMP_BPDP1	333.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-1049248_29	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1049248_29	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
structural_annotation	UHGV-1049248_29	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1049248_30	phrog_202	58.9	8.3e-17	distal tail protein Dit	tail
UniRef90	UHGV-1049248_30	UniRef90_UPI0008374D6A	305.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-1049248_30	764561.D7RWD9_9CAUD	54.3	0.00000722	Phage tail protein	N/A
Pfam	UHGV-1049248_30	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-1049248_30	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
structural_annotation	UHGV-1049248_30	PF05709,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1049248_31	phrog_12312	217.6	0	virion structural protein	head and packaging
UniRef90	UHGV-1049248_31	UniRef90_UPI0009ECCFC9	815.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1049248_31	879308.HMPREF9130_1247	386.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1049248_31	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1049248_31	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1049248_31	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1049248_31	PF06605,PF16838,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1049248_32	phrog_2712	66.2	6.4e-19	tail fiber protein	tail
eggNOG-mapper	UHGV-1049248_32	1449351.RISW2_03105	59.7	0.000000821	N/A	N/A
KOfam	UHGV-1049248_35	K07273	164.1	0	acm; lysozyme	N/A
PHROG	UHGV-1049248_35	phrog_291	160.7	0	endolysin	lysis
UniRef90	UHGV-1049248_35	UniRef90_A0A4D6BGJ6	224.0	0	Lysozyme	N/A
eggNOG-mapper	UHGV-1049248_35	883114.HMPREF9709_01178	262.0	0	hydrolase family 25	N/A
Pfam	UHGV-1049248_35	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1049248_35	PF08460	N/A	N/A	Bacterial SH3 domain	SH3_5
COG	UHGV-1049248_35	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1049248_35	PF01183,PF01471,MF_01672,COG3757,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-1049248_36	phrog_881	55.7	6.3e-16	holin	lysis
UniRef90	UHGV-1049248_36	UniRef90_UPI000493114A	57.8	0.00000000174	holin	N/A
eggNOG-mapper	UHGV-1049248_36	1158614.I592_02317	52.0	0.0000000567	Putative phage holin Dp-1	N/A
Pfam	UHGV-1049248_36	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-1049248_36	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-1049248_37	phrog_30113	102.9	3.9e-30	N/A	unknown function
UniRef90	UHGV-1049248_37	UniRef90_UPI000F8F73B8	259.0	0	N/A	N/A
eggNOG-mapper	UHGV-1049248_37	525309.HMPREF0494_1614	231.0	0	N/A	N/A
Pfam	UHGV-1049248_37	PF12686	N/A	N/A	N/A	DUF3800
structural_annotation	UHGV-1049248_37	PF01351,MF_00052_A,TIGR00729,COG1039	N/A	N/A	N/A	N/A
KOfam	UHGV-1049248_39	K18830	54.3	0.0000000000000033	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1049248_39	phrog_8	43.0	0.0000000000046	transcriptional regulator	transcription regulation
UniRef90	UHGV-1049248_39	UniRef90_A0A095XHT0	129.0	1.18e-36	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1049248_39	525254.HMPREF0072_0271	121.0	7.22e-34	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-1049248_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1049248_39	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1049248_39	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1049248_41	UniRef90_UPI00083390B7	196.0	0	helix-turn-helix domain-containing protein	N/A
PHROG	UHGV-1049248_42	phrog_1233	51.9	0.000000000000014	N/A	unknown function
UniRef90	UHGV-1049248_42	UniRef90_UPI000BF2C991	61.6	0.000000000301	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1049248_42	713605.ADHG01000003_gene719	55.5	0.0000000147	N/A	N/A
structural_annotation	UHGV-1049248_42	PF06114	N/A	N/A	N/A	N/A
PHROG	UHGV-1049248_43	phrog_5079	61.7	1e-17	N/A	unknown function
UniRef90	UHGV-1049248_43	UniRef90_A0A090I2F2	57.0	0.000000000607	Putative secreted protein	N/A
eggNOG-mapper	UHGV-1049248_43	875454.BAEW01000002_gene495	52.8	0.00000000486	N/A	N/A

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1049248	Yes	30,794	48	84	1
UHGV-1035427	No	25,164	47	66	1
UHGV-1023496	No	11,263	45	30	1