Viral OTU vOTU-036726

vOTU: vOTU-036726

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-036726
Number of Genomes	3
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00134 → vGENUS-00673 → vOTU-036726
Host Lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Viral Lifestyle	temperate

Representative Genome
Genome ID	UHGV-1553035
Biosample ID	SAMEA2042382
Length	31,046 bps
CheckV Completeness	88.24% (Medium-quality)
CDS Count	51
CDS Density	92.75%
tRNA Count	0
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 88.24)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1553035_1	phrog_22474	78.2	2.2e-23	endolysin	lysis
UniRef90	UHGV-1553035_1	UniRef90_R6MSP5	318.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1553035_1	665950.HMPREF1025_02511	142.0	3.49e-39	Ami_2	N/A
COG	UHGV-1553035_1	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
PHROG	UHGV-1553035_2	phrog_1863	40.7	0.0000000000074	N/A	unknown function
UniRef90	UHGV-1553035_2	UniRef90_UPI001E345E1F	61.6	0.000000000133	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-1553035_2	1226322.HMPREF1545_04027	63.5	0.00000000000343	N/A	N/A
PHROG	UHGV-1553035_3	phrog_443	55.7	0.0000000000000015	holin	lysis
UniRef90	UHGV-1553035_3	UniRef90_R6MWB0	121.0	6.83e-35	Conserved domain protein	N/A
eggNOG-mapper	UHGV-1553035_3	1235797.C816_04172	81.6	7.98e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1553035_3	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1553035_3	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-1553035_4	K14059	217.1	0	int; integrase	N/A
PHROG	UHGV-1553035_4	phrog_1	188.2	0	integrase	integration and excision
UniRef90	UHGV-1553035_4	UniRef90_A0A2N0ULT2	468.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1553035_4	428125.CLOLEP_02743	317.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1553035_4	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1553035_4	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1553035_4	PF00589,PF02920,MF_01808,TIGR02224,COG4974,COG3422	N/A	N/A	N/A	N/A
KOfam	UHGV-1553035_5	K18843	63.1	6.2e-18	hicB; antitoxin HicB	N/A
PHROG	UHGV-1553035_5	phrog_497	69.6	6e-20	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1553035_5	UniRef90_A0A1E7S2B4	202.0	0	HicB-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1553035_5	903814.ELI_3151	202.0	0	HicB_like antitoxin of bacterial toxin-antitoxin system	N/A
Pfam	UHGV-1553035_5	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-1553035_5	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-1553035_5	PF15919,COG1598	N/A	N/A	N/A	N/A
PHROG	UHGV-1553035_6	phrog_353	79.4	2.7e-23	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1553035_6	UniRef90_A0A7X2NEB3	120.0	2.2e-34	Addiction module toxin, HicA family	N/A
eggNOG-mapper	UHGV-1553035_6	903814.ELI_3150	112.0	5.93e-32	HicA toxin of bacterial toxin-antitoxin,	N/A
Pfam	UHGV-1553035_6	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
COG	UHGV-1553035_6	COG1724	N/A	N/A	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	N/A
structural_annotation	UHGV-1553035_6	PF07927,COG1724	N/A	N/A	N/A	N/A
PHROG	UHGV-1553035_7	phrog_1847	357.9	0	N/A	unknown function
UniRef90	UHGV-1553035_7	UniRef90_U2Q2K4	526.0	0	T5orf172 domain-containing protein	N/A
eggNOG-mapper	UHGV-1553035_7	1256908.HMPREF0373_00641	526.0	0	T5orf172	N/A
Pfam	UHGV-1553035_7	PF13455	N/A	N/A	Meiotically up-regulated gene 113	MUG113
COG	UHGV-1553035_7	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1553035_7	PF13250,NF041454	N/A	N/A	N/A	N/A
PHROG	UHGV-1553035_8	phrog_1914	170.5	0	N/A	unknown function
UniRef90	UHGV-1553035_8	UniRef90_A0A373XNL4	229.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1553035_8	1160721.RBI_I01604	154.0	9.80909e-45	N/A	N/A
Pfam	UHGV-1553035_8	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1553035_8	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1553035_8	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-1553035_9	phrog_2967	41.8	0.000000000016	transcriptional regulator	transcription regulation
UniRef90	UHGV-1553035_9	UniRef90_A0A374ND72	164.0	0	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1553035_9	1121115.AXVN01000006_gene2173	107.0	1.04e-27	sequence-specific DNA binding	N/A
COG	UHGV-1553035_9	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1553035_9	PF13560,MF_00535,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1553035_10	UniRef90_A0A374N1V0	114.0	7.19e-32	N/A	N/A
eggNOG-mapper	UHGV-1553035_10	171693.BN988_01635	84.0	1.89e-20	N/A	N/A
Pfam	UHGV-1553035_10	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-1553035_10	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1553035_10	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1553035_12	phrog_585	110.3	1.3e-32	N/A	unknown function
UniRef90	UHGV-1553035_12	UniRef90_A0A851IGZ3	130.0	1.95e-36	N/A	N/A
eggNOG-mapper	UHGV-1553035_12	1033744.CAEL01000029_gene1306	124.0	3.07e-34	N/A	N/A
Pfam	UHGV-1553035_12	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-1553035_12	PF10711,MF_01819,TIGR03433,COG3432	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1553035_13	PF11614,TIGR02588,COG2847	N/A	N/A	N/A	N/A
UniRef90	UHGV-1553035_14	UniRef90_UPI0005510EBF	66.2	0.00000000000115	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1553035_16	PF03731	N/A	N/A	Ku70/Ku80 N-terminal alpha/beta domain	Ku_N
KOfam	UHGV-1553035_19	K07699	70.2	2.5e-20	spo0A; two-component system, response regulator, stage 0 sporulation protein A	N/A
PHROG	UHGV-1553035_19	phrog_24603	42.3	0.000000000012	N/A	unknown function
Pfam	UHGV-1553035_19	PF08769	N/A	N/A	Sporulation initiation factor Spo0A C terminal	Spo0A_C
COG	UHGV-1553035_19	COG0745	N/A	N/A	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	N/A
structural_annotation	UHGV-1553035_19	PF08769,TIGR02875	N/A	N/A	N/A	N/A
KOfam	UHGV-1553035_20	K00390	99.9	2.4e-29	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1553035_20	phrog_424	117.8	8.9e-35	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1553035_20	UniRef90_UPI001C034617	451.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1553035_20	1408437.JNJN01000032_gene2312	329.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-1553035_20	BrxP_00001	76.1	4.9e-22	BrxP	BREX
Pfam	UHGV-1553035_20	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1553035_20	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1553035_20	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-1553035_22	phrog_323	94.4	6.8e-33	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1553035_22	UniRef90_UPI001C01CFF8	300.0	0	SANT/Myb domain-containing protein	N/A
eggNOG-mapper	UHGV-1553035_22	394503.Ccel_3305	335.0	0	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	N/A
dbAPIS	UHGV-1553035_22	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
structural_annotation	UHGV-1553035_22	PF11112,NF040595	N/A	N/A	N/A	N/A
PHROG	UHGV-1553035_23	phrog_8684	63.9	3e-18	N/A	unknown function
UniRef90	UHGV-1553035_23	UniRef90_A0A374DV44	136.0	8.61e-39	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1553035_23	1536769.P40081_15180	63.2	0.0000000000568	YopX protein	N/A
Pfam	UHGV-1553035_23	PF09643	N/A	N/A	YopX protein	YopX
PHROG	UHGV-1553035_24	phrog_25754	53.7	0.0000000000000016	N/A	unknown function
eggNOG-mapper	UHGV-1553035_24	97139.C824_00736	60.5	0.000000000181	N/A	N/A
structural_annotation	UHGV-1553035_24	PF10842,MF_00436,TIGR02383	N/A	N/A	N/A	N/A
UniRef90	UHGV-1553035_28	UniRef90_UPI000E4DC4DA	230.0	0	helix-turn-helix domain-containing protein	N/A
KOfam	UHGV-1553035_30	K18830	57.6	3.3e-16	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1553035_30	phrog_8	64.5	2.5e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1553035_30	UniRef90_A0A374N9T4	108.0	1.04e-29	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1553035_30	935845.JADQ01000015_gene3206	81.6	5.67e-19	Cro/C1-type HTH DNA-binding domain	N/A
PADLOC	UHGV-1553035_30	retron_type_VI_hth_cluster2_1	43.6	0.0000000000085	N/A	Retron
Pfam	UHGV-1553035_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1553035_30	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1553035_30	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1553035_32	phrog_824	145.5	1.59748e-43	N/A	unknown function
UniRef90	UHGV-1553035_32	UniRef90_UPI00164A50A6	256.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1553035_32	397288.C806_00096	145.0	2.20004e-43	VRR_NUC	N/A
Pfam	UHGV-1553035_32	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1553035_32	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-1553035_34	phrog_3584	138.4	5.10003e-41	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1553035_34	1235800.C819_00515	78.6	0.0000000000000177	N/A	N/A
structural_annotation	UHGV-1553035_34	PF21578,NF041486	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1553035_35	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1553035_36	phrog_119	72.8	5e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1553035_36	UniRef90_A0A412ULY9	182.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1553035_36	1405.DJ92_863	87.0	6.57e-21	HNH endonuclease	N/A
Pfam	UHGV-1553035_36	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1553035_36	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1553035_37	phrog_5110	82.8	3.2e-24	terminase small subunit	head and packaging
UniRef90	UHGV-1553035_37	UniRef90_UPI00057D0A7C	113.0	1.2e-30	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-1553035_37	86416.Clopa_0336	106.0	1.56e-28	N/A	N/A
Pfam	UHGV-1553035_37	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1553035_37	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1553035_38	phrog_9	286.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1553035_38	UniRef90_A0A412UM03	981.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1553035_38	86416.Clopa_0337	621.0	0	Phage Terminase	N/A
Pfam	UHGV-1553035_38	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1553035_38	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1553035_38	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1553035_38	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1553035_39	phrog_12	102.4	3.7e-30	portal protein	head and packaging
UniRef90	UHGV-1553035_39	UniRef90_A0A412ULV9	577.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1553035_39	1415774.U728_1254	269.0	0	Phage portal protein	N/A
Pfam	UHGV-1553035_39	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1553035_39	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1553035_39	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1553035_39	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1553035_40	K01358	147.8	9.80909e-44	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1553035_40	phrog_94	215.0	0	head maturation protease	head and packaging
UniRef90	UHGV-1553035_40	UniRef90_A0A412ULU1	384.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1553035_40	86416.Clopa_0340	174.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1553035_40	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1553035_40	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1553035_40	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1553035_41	phrog_10	113.3	2.5e-33	major head protein	head and packaging
UniRef90	UHGV-1553035_41	UniRef90_A0A412ULW9	577.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1553035_41	1211817.CCAT010000053_gene2132	327.0	0	Phage capsid family	N/A
Pfam	UHGV-1553035_41	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1553035_41	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1553035_41	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1553035_41	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1553035_42	phrog_749	51.5	0.000000000000016	N/A	unknown function
UniRef90	UHGV-1553035_42	UniRef90_A0A1G5CMX8	103.0	1.01e-26	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1553035_42	349161.Dred_2603	54.7	0.0000000255	N/A	N/A
PHROG	UHGV-1553035_43	phrog_19734	65.8	6.1e-19	N/A	unknown function
eggNOG-mapper	UHGV-1553035_43	86416.Clopa_0343	55.1	0.0000000375	N/A	N/A
structural_annotation	UHGV-1553035_43	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1553035_44	1123315.AUIP01000001_gene1429	54.3	0.0000000652	N/A	N/A
structural_annotation	UHGV-1553035_44	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-1553035_45	UniRef90_UPI000E5564A4	173.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1553035_45	1118057.CAGX01000043_gene486	66.2	0.00000000000484	Bacteriophage HK97-gp10, putative tail-component	N/A
structural_annotation	UHGV-1553035_45	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1553035_46	phrog_88	62.6	6.2e-18	major tail protein	tail
UniRef90	UHGV-1553035_46	UniRef90_A0A1G5CNS8	172.0	0	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1553035_46	411470.RUMGNA_02319	59.7	0.0000000202	COG NOG11304 non supervised orthologous group	N/A
NCBIFam	UHGV-1553035_46	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1553035_46	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1553035_47	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-1553035_49	K20282	50.2	8.7e-17	GCC2; GRIP and coiled-coil domain-containing protein 2	N/A
PHROG	UHGV-1553035_49	phrog_1272	269.7	0	tail length tape measure protein	tail
UniRef90	UHGV-1553035_49	UniRef90_A0A412ULX0	841.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1553035_49	588581.Cpap_1264	275.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1553035_49	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-1553035_49	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1553035_49	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1553035_50	phrog_33	66.9	5.3e-19	distal tail protein Dit	tail
UniRef90	UHGV-1553035_50	UniRef90_UPI000BB5198E	74.7	0.00000000000195	phage tail family protein	N/A
eggNOG-mapper	UHGV-1553035_50	272623.L63101	71.2	0.0000000000076	phage tail	N/A
COG	UHGV-1553035_50	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1553035_50	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1553035_51	phrog_1067	104.5	1.1e-30	minor head protein	head and packaging
UniRef90	UHGV-1553035_51	UniRef90_A0A1G5CPD2	163.0	4.52619e-43	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-1553035_51	1567011.A0A0A7RUI9_9VIRU	70.5	0.000000000269	N-acetylmuramoyl-L-alanine amidase activity	N/A
NCBIFam	UHGV-1553035_51	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-1553035_51	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1553035	Yes	31,046	36	88	1
UHGV-0050268	No	24,686	37	70	1
UHGV-1448885	No	24,686	37	70	1