Viral OTU vOTU-038878

vOTU: vOTU-038878

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-038878
Number of Genomes	3
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00007 → vGENUS-00066 → vOTU-038878
Host Lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Viral Lifestyle	temperate

Representative Genome
Genome ID	UHGV-1880220
Biosample ID	SAMN18819144
Length	32,195 bps
CheckV Completeness	55.84% (Medium-quality)
CDS Count	72
CDS Density	89.02%
tRNA Count	0
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 55.84)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1880220_1	UniRef90_UPI001C3BFF52	78.2	7.1e-18	Holin	N/A
eggNOG-mapper	UHGV-1880220_1	1235800.C819_01425	59.3	0.0000000000369	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1880220_1	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UniRef90	UHGV-1880220_2	UniRef90_UPI0018835F0C	335.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-1880220_2	476272.RUMHYD_00002	105.0	9.96e-21	N/A	N/A
structural_annotation	UHGV-1880220_2	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-1880220_9	phrog_16490	100.7	4e-38	N/A	unknown function
eggNOG-mapper	UHGV-1880220_9	1408437.JNJN01000043_gene803	153.0	1.02995e-42	N/A	N/A
eggNOG-mapper	UHGV-1880220_10	1408437.JNJN01000043_gene802	116.0	4.25e-32	N/A	N/A
eggNOG-mapper	UHGV-1880220_11	1408437.JNJN01000043_gene801	84.7	1.53e-17	N/A	N/A
eggNOG-mapper	UHGV-1880220_12	1415774.U728_858	123.0	3.25e-34	N/A	N/A
PHROG	UHGV-1880220_13	phrog_7070	113.6	5.6e-34	N/A	unknown function
eggNOG-mapper	UHGV-1880220_13	1195072.M4HPW0_9CAUD	94.0	2.68e-23	N/A	N/A
structural_annotation	UHGV-1880220_15	PF07878	N/A	N/A	N/A	N/A
Pfam	UHGV-1880220_16	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1880220_17	PF07878	N/A	N/A	N/A	N/A
KOfam	UHGV-1880220_19	K03496	237.8	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1880220_19	phrog_164	163.5	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1880220_19	UniRef90_A0A1C6BS15	206.0	0	Sporulation initiation inhibitor protein soj	N/A
eggNOG-mapper	UHGV-1880220_19	1408423.JHYA01000021_gene392	186.0	0	Cellulose biosynthesis protein BcsQ	N/A
Pfam	UHGV-1880220_19	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1880220_19	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1880220_19	PF13614,MF_00533,NF010443,COG1192	N/A	N/A	N/A	N/A
Pfam	UHGV-1880220_20	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1880220_20	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-1880220_21	phrog_4402	108.3	6.4e-32	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1880220_21	UniRef90_A0A0H5Q331	254.0	0	Rep_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1880220_21	999413.HMPREF1094_04438	143.0	6.81e-37	Initiator Replication protein	N/A
Pfam	UHGV-1880220_21	PF01051	N/A	N/A	Initiator Replication protein, WH1	Rep3_N
Pfam	UHGV-1880220_21	PF21205	N/A	N/A	Initiator Rep protein, WH2	Rep3_C
COG	UHGV-1880220_21	COG5527	N/A	N/A	Protein involved in initiation of plasmid replication	N/A
structural_annotation	UHGV-1880220_21	PF01051,PF21205,NF010305,COG5527	N/A	N/A	N/A	N/A
UniRef90	UHGV-1880220_22	UniRef90_A0A2A7AM70	212.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1880220_22	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1880220_22	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1880220_24	phrog_8	44.1	0.0000000000044	transcriptional regulator	transcription regulation
UniRef90	UHGV-1880220_24	UniRef90_UPI001D05D211	73.9	0.00000000000000936	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1880220_24	693746.OBV_43290	64.3	0.0000000000164	addiction module antidote protein HigA	N/A
COG	UHGV-1880220_24	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-1880220_24	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1880220_25	UniRef90_UPI001956DCC9	72.0	0.00000000000000253	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-1880220_25	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1880220_25	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1880220_29	PF14143	N/A	N/A	N/A	N/A
KOfam	UHGV-1880220_30	K07738	42.7	0.0000000000098	nrdR; transcriptional repressor NrdR	N/A
eggNOG-mapper	UHGV-1880220_30	870187.Thini_0915	51.6	0.000000372	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	N/A
Pfam	UHGV-1880220_30	PF01096	N/A	N/A	Transcription factor S-II (TFIIS)	TFIIS_C
COG	UHGV-1880220_30	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
structural_annotation	UHGV-1880220_30	PF04606,NF007241	N/A	N/A	N/A	N/A
Pfam	UHGV-1880220_32	PF13451	N/A	N/A	Probable zinc-ribbon domain	zf-trcl
COG	UHGV-1880220_32	COG1278	N/A	N/A	Cold shock protein, CspA family	N/A
structural_annotation	UHGV-1880220_32	PF13451	N/A	N/A	N/A	N/A
PHROG	UHGV-1880220_33	phrog_155	149.5	2.10195e-44	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1880220_33	UniRef90_E2ZNS9	272.0	0	Erf family protein	N/A
eggNOG-mapper	UHGV-1880220_33	748224.HMPREF9436_03360	272.0	0	ERF superfamily	N/A
Pfam	UHGV-1880220_33	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1880220_33	PF04404,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-1880220_34	K03111	115.5	8.1e-34	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1880220_34	phrog_44	126.4	2.5e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1880220_34	UniRef90_A0A6N7TNV3	159.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1880220_34	748224.HMPREF9436_03359	155.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1880220_34	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1880220_34	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1880220_34	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1880220_34	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1880220_34	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1880220_35	phrog_28936	104.6	8.4e-31	N/A	unknown function
eggNOG-mapper	UHGV-1880220_35	573061.Clocel_3563	104.0	1.21e-25	N/A	N/A
PHROG	UHGV-1880220_36	phrog_5968	40.9	0.000000000028	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1880220_36	UniRef90_UPI001D053AA3	58.2	0.00000000178	phage replisome organizer N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1880220_36	718252.FP2_01000	116.0	7.92e-31	N/A	N/A
COG	UHGV-1880220_36	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-1880220_37	phrog_186	49.3	0.000000000000087	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1880220_37	UniRef90_UPI001C02E649	200.0	0	DnaD domain protein	N/A
Pfam	UHGV-1880220_37	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1880220_37	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
PHROG	UHGV-1880220_40	phrog_757	51.9	0.000000000000012	DNA methyltransferase	other
UniRef90	UHGV-1880220_40	UniRef90_A0A7J2R6L5	69.3	0.0000000000000152	DNA cytosine methyltransferase (Fragment)	N/A
eggNOG-mapper	UHGV-1880220_40	748224.HMPREF9436_03069	106.0	4.33e-28	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1880220_40	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-1880220_41	phrog_757	169.0	0	DNA methyltransferase	other
UniRef90	UHGV-1880220_41	UniRef90_A0A6M3LEH2	177.0	0	Putative methyltransferase	N/A
eggNOG-mapper	UHGV-1880220_41	1247726.MIM_c10510	150.0	3.22299e-44	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1880220_41	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-1880220_44	phrog_843	62.0	7.1e-18	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1880220_44	UniRef90_UPI001159D907	115.0	1.62e-29	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-1880220_44	929506.CbC4_1203	107.0	9.72e-27	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
structural_annotation	UHGV-1880220_44	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-1880220_45	phrog_30930	94.1	1.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-1880220_45	1214184.ALKY01000039_gene933	85.1	1.58e-19	N/A	N/A
structural_annotation	UHGV-1880220_45	PF05037	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1880220_47	PF11998,COG5420	N/A	N/A	N/A	N/A
KOfam	UHGV-1880220_50	K00390	113.0	2.1e-33	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1880220_50	phrog_424	128.1	6.2e-38	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1880220_50	UniRef90_A0A1Y4LU27	383.0	0	Adenylyl-sulfate reductase	N/A
eggNOG-mapper	UHGV-1880220_50	1408437.JNJN01000032_gene2312	340.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-1880220_50	BrxP_00001	80.8	5e-24	BrxP	BREX
Pfam	UHGV-1880220_50	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1880220_50	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1880220_50	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1880220_52	MF_00085,TIGR00037,COG0231	N/A	N/A	N/A	N/A
PHROG	UHGV-1880220_54	phrog_924	49.6	0.000000000000084	N/A	unknown function
UniRef90	UHGV-1880220_54	UniRef90_UPI001495255A	58.9	0.00000000828	N/A	N/A
Pfam	UHGV-1880220_54	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1880220_55	PF16677	N/A	N/A	N/A	N/A
UniRef90	UHGV-1880220_57	UniRef90_UPI0012DD33A2	308.0	0	restriction endonuclease subunit M	N/A
eggNOG-mapper	UHGV-1880220_57	596329.HMPREF0631_0252	221.0	0	restriction endonuclease	N/A
PADLOC	UHGV-1880220_57	MTase_II_00176	166.3	0	Type II methyltransferase	RM
COG	UHGV-1880220_57	COG1002	N/A	N/A	Type II restriction/modification system, endonuclease and methylase domains	N/A
structural_annotation	UHGV-1880220_58	PF04319,COG4991	N/A	N/A	N/A	N/A
NCBIFam	UHGV-1880220_63	TIGR03831.1	N/A	N/A	YgiT-type zinc finger protein	N/A
Pfam	UHGV-1880220_65	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1880220_65	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-1880220_68	phrog_599	47.3	0.00000000000046	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-1880220_68	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-1880220_68	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-1880220_68	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1880220_69	phrog_15768	93.7	6.4e-28	N/A	unknown function
UniRef90	UHGV-1880220_69	UniRef90_A0A6N7WKT0	95.1	2.28e-20	N/A	N/A
eggNOG-mapper	UHGV-1880220_69	1189620.AJXL01000045_gene1040	75.9	0.000000000000152	N/A	N/A
Pfam	UHGV-1880220_69	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1880220_69	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1880220_70	K02314	210.8	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1880220_70	phrog_19	218.5	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1880220_70	UniRef90_UPI001CBC4B63	423.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1880220_70	1203606.HMPREF1526_01325	156.0	2.16999e-40	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1880220_70	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1880220_70	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1880220_70	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-1880220_72	phrog_1709	58.2	1.5e-16	N/A	unknown function
eggNOG-mapper	UHGV-1880220_72	500632.CLONEX_01053	86.3	6.2e-21	N/A	N/A

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1880220	Yes	32,195	49	56	1
UHGV-1667373	No	11,072	48	19	1
UHGV-1667378	No	11,072	48	19	1