Viral OTU vOTU-045933

vOTU: vOTU-045933

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-045933
Number of Genomes	2
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-01501 → vGENUS-02061 → vSUBGEN-19556 → vOTU-045933
Host Lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger sp004555405
Viral Lifestyle	temperate

Representative Genome
Genome ID	UHGV-0131205
Biosample ID	SAMN03283285
Length	42,388 bps
CheckV Completeness	100.00% (Complete)
CDS Count	67
CDS Density	91.21%
tRNA Count	0
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0131205_3	PF07638,MF_00674,TIGR02954,COG1846	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0131205_4	1408437.JNJN01000060_gene452	263.0	0	heme binding	N/A
COG	UHGV-0131205_4	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
PHROG	UHGV-0131205_6	phrog_1129	79.9	1.9e-23	holin	lysis
UniRef90	UHGV-0131205_6	UniRef90_A0A1G9U2I2	96.3	5.47e-24	Phage holin family Hol44, holin superfamily V	N/A
eggNOG-mapper	UHGV-0131205_6	537013.CLOSTMETH_03774	86.3	7.74e-21	N/A	N/A
Pfam	UHGV-0131205_6	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0131205_6	PF16079	N/A	N/A	N/A	N/A
PHROG	UHGV-0131205_7	phrog_937	49.2	0.000000000000098	hemolysin	other
eggNOG-mapper	UHGV-0131205_7	1297617.JPJD01000099_gene2176	53.5	0.0000000512	N/A	N/A
KOfam	UHGV-0131205_8	K07273	218.9	0	acm; lysozyme	N/A
PHROG	UHGV-0131205_8	phrog_291	178.1	0	endolysin	lysis
UniRef90	UHGV-0131205_8	UniRef90_A0A4R1QM33	244.0	0	GH25 family lysozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
eggNOG-mapper	UHGV-0131205_8	537013.CLOSTMETH_01756	241.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0131205_8	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0131205_8	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0131205_8	PF01183,MF_02227,NF002576,COG3757	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0131205_9	742733.HMPREF9469_05015	52.0	0.000000677	N/A	N/A
eggNOG-mapper	UHGV-0131205_10	1235802.C823_01049	249.0	0	N/A	N/A
PHROG	UHGV-0131205_13	phrog_3287	91.4	4.5e-27	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0131205_13	665956.HMPREF1032_03917	583.0	0	N/A	N/A
structural_annotation	UHGV-0131205_13	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0131205_14	693746.OBV_23880	66.6	0.0000000000921	N/A	N/A
structural_annotation	UHGV-0131205_14	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0131205_16	phrog_371	44.7	0.0000000000017	major head protein	head and packaging
UniRef90	UHGV-0131205_16	UniRef90_UPI00164C0E21	110.0	6.17e-24	Mu-like prophage major head subunit gpT family protein	N/A
eggNOG-mapper	UHGV-0131205_16	1226322.HMPREF1545_03848	122.0	2.07e-29	N/A	N/A
structural_annotation	UHGV-0131205_16	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0131205_17	phrog_35275	71.9	8.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-0131205_17	1226322.HMPREF1545_03846	68.2	0.000000000324	N/A	N/A
PHROG	UHGV-0131205_19	phrog_156	181.2	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0131205_19	693746.OBV_23930	340.0	0	N/A	N/A
structural_annotation	UHGV-0131205_19	PF12236,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0131205_21	K06909	40.3	0.000000000035	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0131205_21	phrog_2	70.3	4.1e-20	terminase large subunit	head and packaging
UniRef90	UHGV-0131205_21	UniRef90_UPI001F401ABC	487.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0131205_21	316274.Haur_0564	93.2	2e-17	N/A	N/A
COG	UHGV-0131205_21	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-0131205_21	PF03354,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0131205_23	PF03869,NF040976,COG4453	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0131205_26	PF03869,NF010256,COG4877	N/A	N/A	N/A	N/A
PHROG	UHGV-0131205_27	phrog_15863	100.0	1.9e-29	N/A	unknown function
UniRef90	UHGV-0131205_27	UniRef90_UPI0018766E78	126.0	5.2e-34	J domain-containing protein	N/A
eggNOG-mapper	UHGV-0131205_27	558152.IQ37_05720	88.6	5.5e-20	Heat shock protein DnaJ domain protein	N/A
COG	UHGV-0131205_27	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
structural_annotation	UHGV-0131205_30	PF17917	N/A	N/A	N/A	N/A
KOfam	UHGV-0131205_31	K23779	52.3	0.000000000000015	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0131205_31	phrog_5823	47.7	0.00000000000017	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0131205_31	742738.HMPREF9460_04059	52.8	0.00000409	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0131205_31	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0131205_31	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0131205_34	K19779	45.5	0.0000000000013	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
PHROG	UHGV-0131205_34	phrog_599	50.6	0.000000000000048	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0131205_34	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0131205_34	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0131205_34	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
COG	UHGV-0131205_34	COG1601	N/A	N/A	Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain	N/A
structural_annotation	UHGV-0131205_35	PF02888	N/A	N/A	N/A	N/A
PHROG	UHGV-0131205_36	phrog_3136	128.3	3e-38	N/A	unknown function
UniRef90	UHGV-0131205_36	UniRef90_A0A3D0HBD2	159.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0131205_36	97139.C824_00742	65.5	0.0000000000493	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0131205_36	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0131205_36	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0131205_38	phrog_190	115.0	5.7e-34	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0131205_38	UniRef90_UPI001C0F5697	149.0	4.2039e-44	N/A	N/A
eggNOG-mapper	UHGV-0131205_38	1236514.BAKL01000051_gene3708	105.0	7.09e-28	N/A	N/A
Pfam	UHGV-0131205_38	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0131205_38	PF06356	N/A	N/A	N/A	N/A
KOfam	UHGV-0131205_39	K00571	110.7	1.8e-32	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0131205_39	phrog_67	95.5	1.5e-29	DNA methyltransferase	other
UniRef90	UHGV-0131205_39	UniRef90_A0A1C6E5W1	422.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0131205_39	749222.Nitsa_1817	384.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0131205_39	MTase_II_00157	87.3	5.8e-27	Type II methyltransferase	RM
Pfam	UHGV-0131205_39	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0131205_39	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0131205_39	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0131205_42	K02315	175.5	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0131205_42	phrog_50	153.4	1.4013e-45	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0131205_42	UniRef90_A0A3A5TME7	270.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0131205_42	428125.CLOLEP_03477	202.0	0	N/A	N/A
Pfam	UHGV-0131205_42	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
NCBIFam	UHGV-0131205_42	NF005992.0	N/A	N/A	hypothetical protein	N/A
COG	UHGV-0131205_42	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0131205_42	PF01695,MF_01919,NF005992,COG1484	N/A	N/A	N/A	N/A
KOfam	UHGV-0131205_43	K02315	46.8	0.00000000000047	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0131205_43	phrog_1163	194.6	0	N/A	unknown function
UniRef90	UHGV-0131205_43	UniRef90_UPI0015C5F92B	237.0	0	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0131205_43	469604.HMPREF0946_01101	150.0	1.15999e-41	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-0131205_43	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
Pfam	UHGV-0131205_43	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0131205_43	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
structural_annotation	UHGV-0131205_43	PF09681,TIGR01714,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-0131205_47	K03111	49.1	0.00000000000014	ssb; single-strand DNA-binding protein	N/A
UniRef90	UHGV-0131205_47	UniRef90_A0A2E3PG19	55.8	0.000000549	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0131205_47	211114.JOEF01000001_gene7097	52.4	0.00000237	Single-strand binding protein family	N/A
Pfam	UHGV-0131205_47	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-0131205_47	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0131205_47	PF00436,MF_00984,TIGR04418,COG2965	N/A	N/A	N/A	N/A
KOfam	UHGV-0131205_48	K07455	304.1	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0131205_48	phrog_148	289.0	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0131205_48	UniRef90_U2SBP2	328.0	0	Recombination and repair protein RecT	N/A
eggNOG-mapper	UHGV-0131205_48	1226322.HMPREF1545_00015	328.0	0	RecT family	N/A
Pfam	UHGV-0131205_48	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0131205_48	NF007351.0	N/A	N/A	recombination protein RecT	N/A
COG	UHGV-0131205_48	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0131205_48	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0131205_49	phrog_434	299.1	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0131205_49	UniRef90_UPI00164B76E0	268.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0131205_49	857293.CAAU_0780	256.0	0	YqaJ-like viral recombinase domain	N/A
Pfam	UHGV-0131205_49	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0131205_49	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0131205_49	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0131205_49	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0131205_54	phrog_5070	191.0	0	N/A	unknown function
UniRef90	UHGV-0131205_54	UniRef90_A0A285PUH1	105.0	2.91e-24	Trimeric LpxA-like	N/A
eggNOG-mapper	UHGV-0131205_54	411470.RUMGNA_02189	102.0	5.11e-24	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
COG	UHGV-0131205_54	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-0131205_54	NF040481	N/A	N/A	N/A	N/A
KOfam	UHGV-0131205_55	K07741	130.2	4e-38	antB; anti-repressor protein	N/A
PHROG	UHGV-0131205_55	phrog_130	250.2	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0131205_55	UniRef90_A0A1Q6R5B0	334.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0131205_55	1122146.AUHP01000010_gene1023	301.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0131205_55	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0131205_55	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0131205_55	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0131205_55	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
UniRef90	UHGV-0131205_57	UniRef90_UPI000CF638BB	63.5	0.0000000000074	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0131205_57	742738.HMPREF9460_02486	55.1	0.00000000302	N/A	N/A
structural_annotation	UHGV-0131205_57	PF13443,NF000090,COG1813	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0131205_58	428125.CLOLEP_02738	51.6	0.0000022	SMART helix-turn-helix domain protein	N/A
Pfam	UHGV-0131205_58	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0131205_58	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0131205_58	PF12844,NF007257,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0131205_59	1410653.JHVC01000032_gene1036	63.2	0.00000000544	domain protein	N/A
COG	UHGV-0131205_59	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-0131205_61	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0131205_61	COG3620	N/A	N/A	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	N/A
structural_annotation	UHGV-0131205_61	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0131205_62	K14059	139.2	5.70006e-41	int; integrase	N/A
PHROG	UHGV-0131205_62	phrog_1	152.2	4.2039e-45	integrase	integration and excision
UniRef90	UHGV-0131205_62	UniRef90_UPI0019575017	486.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0131205_62	1519439.JPJG01000011_gene49	117.0	6.95e-27	Phage integrase family	N/A
Pfam	UHGV-0131205_62	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0131205_62	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0131205_62	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0131205_66	K07741	204.2	0	antB; anti-repressor protein	N/A
PHROG	UHGV-0131205_66	phrog_63	173.7	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0131205_66	UniRef90_UPI001D09C776	313.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-0131205_66	386415.NT01CX_2199	292.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-0131205_66	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0131205_66	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0131205_66	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0131205_66	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0131205	Yes	42,388	49	100	1
UHGV-0388682	No	42,388	49	100	1