Viral OTU vOTU-048007

vOTU: vOTU-048007

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-048007
Number of Genomes	3
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-00313 → vGENUS-00344 → vSUBGEN-00300 → vOTU-048007
Host Lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger
Viral Lifestyle	temperate

Representative Genome
Genome ID	UHGV-0206001
Biosample ID	SAMN09781781
Length	33,929 bps
CheckV Completeness	100.00% (Complete)
CDS Count	46
CDS Density	94.21%
tRNA Count	0
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0206001_1	K01356	143.9	1.60028e-42	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0206001_1	phrog_4	121.6	7.4e-36	transcriptional repressor	transcription regulation
UniRef90	UHGV-0206001_1	UniRef90_A0A6N8H052	270.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0206001_1	411483.FAEPRAA2165_03041	171.0	0	N/A	N/A
Pfam	UHGV-0206001_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0206001_1	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0206001_1	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0206001_1	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0206001_2	1114972.AUAW01000005_gene253	55.1	0.0000000713	Short C-terminal domain	N/A
Pfam	UHGV-0206001_2	PF14472	N/A	N/A	N/A	DUF4429
KOfam	UHGV-0206001_3	K14059	131.4	1.1e-38	int; integrase	N/A
PHROG	UHGV-0206001_3	phrog_1	147.1	1.4013e-43	integrase	integration and excision
UniRef90	UHGV-0206001_3	UniRef90_A0A1Q6T3G6	645.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0206001_3	1507.HMPREF0262_00307	214.0	0	Phage integrase family	N/A
Pfam	UHGV-0206001_3	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0206001_3	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0206001_3	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0206001_5	K22299	48.6	0.00000000000017	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
UniRef90	UHGV-0206001_5	UniRef90_A0A2W4PQ46	52.4	0.000000174	XRE family transcriptional regulator	N/A
Pfam	UHGV-0206001_5	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0206001_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0206001_6	phrog_199	63.0	3.4e-18	holin	lysis
UniRef90	UHGV-0206001_6	UniRef90_UPI001C0198F4	393.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0206001_6	411471.SUBVAR_05868	190.0	0	toxin secretion phage lysis holin	N/A
Pfam	UHGV-0206001_6	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0206001_6	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0206001_6	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0206001_6	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0206001_7	K19304	44.4	0.0000000000024	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0206001_7	phrog_3578	47.7	0.00000000000016	metallo-endopeptidase	other
UniRef90	UHGV-0206001_7	UniRef90_UPI001C02DE01	362.0	0	peptidoglycan DD-metalloendopeptidase family protein	N/A
eggNOG-mapper	UHGV-0206001_7	411471.SUBVAR_05145	264.0	0	heme binding	N/A
Pfam	UHGV-0206001_7	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0206001_7	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0206001_7	PF01551,NF040883	N/A	N/A	N/A	N/A
PHROG	UHGV-0206001_8	phrog_111	168.0	0	DNA methyltransferase	other
UniRef90	UHGV-0206001_8	UniRef90_A0A316S635	223.0	0	Adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0206001_8	1567011.A0A0A7RUD1_9VIRU	186.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-0206001_8	oMTase_00015	189.9	0	orphan methyltransferase	RM
Pfam	UHGV-0206001_8	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0206001_8	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
PHROG	UHGV-0206001_10	phrog_4912	67.6	2.2e-19	tail fiber assembly	tail
UniRef90	UHGV-0206001_10	UniRef90_UPI0006D0549A	70.5	0.00000000000102	phage tail assembly chaperone	N/A
eggNOG-mapper	UHGV-0206001_10	666685.R2APBS1_2865	70.9	0.0000000000000548	Phage tail assembly chaperone protein	N/A
Pfam	UHGV-0206001_10	PF16778	N/A	N/A	Phage tail assembly chaperone protein	Phage_tail_APC
structural_annotation	UHGV-0206001_10	PF16778	N/A	N/A	N/A	N/A
KOfam	UHGV-0206001_11	K00986	83.9	1.9e-24	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0206001_11	phrog_1423	145.1	5.60519e-43	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0206001_11	UniRef90_A0A329TTF1	209.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-0206001_11	411468.CLOSCI_01505	153.0	1.8e-39	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0206001_11	icity0040	51.7	0.000000000000016	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0206001_11	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0206001_11	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0206001_11	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0206001_12	phrog_5302	171.8	0	tail protein	tail
UniRef90	UHGV-0206001_12	UniRef90_A0A1F8V1G3	135.0	3.1e-30	BppU_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0206001_12	411470.RUMGNA_00248	142.0	1.43e-33	Phage tail-collar fibre protein	N/A
COG	UHGV-0206001_12	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-0206001_13	PF16407	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0206001_14	PF18614,MF_00085,NF003082,COG0361	N/A	N/A	N/A	N/A
PHROG	UHGV-0206001_15	phrog_26795	88.8	3.4e-26	N/A	unknown function
eggNOG-mapper	UHGV-0206001_15	742740.HMPREF9474_04294	125.0	5.75e-30	N/A	N/A
structural_annotation	UHGV-0206001_15	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-0206001_16	UniRef90_A0A3D0W045	224.0	0	Fibronectin type-III domain-containing protein	N/A
structural_annotation	UHGV-0206001_16	PF02010,PF06995,MF_04116,NF010681,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0206001_17	phrog_33680	126.4	1.8e-37	N/A	unknown function
UniRef90	UHGV-0206001_17	UniRef90_A0A174XMM8	230.0	0	Tail tape measure protein TP901 core region	N/A
eggNOG-mapper	UHGV-0206001_17	742740.HMPREF9474_04296	233.0	0	Phage tail tape measure protein TP901	N/A
COG	UHGV-0206001_17	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0206001_17	TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0206001_18	PF12363	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0206001_19	PF06488,TIGR01603	N/A	N/A	N/A	N/A
PHROG	UHGV-0206001_21	phrog_5	47.5	0.00000000000041	tail completion or Neck1 protein	connector
eggNOG-mapper	UHGV-0206001_21	1195236.CTER_5108	70.9	0.000000000000112	Phage protein, HK97 gp10 family	N/A
structural_annotation	UHGV-0206001_21	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0206001_22	phrog_1951	63.5	2.7e-18	head-tail adaptor	connector
UniRef90	UHGV-0206001_22	UniRef90_UPI00195B41A2	166.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-0206001_22	411470.RUMGNA_02070	64.7	0.00000000000407	N/A	N/A
structural_annotation	UHGV-0206001_22	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0206001_23	phrog_5223	72.8	2.9e-21	neck protein	connector
UniRef90	UHGV-0206001_23	UniRef90_UPI00195CBB4A	140.0	1.46996e-41	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0206001_23	411471.SUBVAR_05853	93.6	1.17e-23	N/A	N/A
PHROG	UHGV-0206001_24	phrog_10	55.2	8e-16	major head protein	head and packaging
UniRef90	UHGV-0206001_24	UniRef90_A0A1C5W5F9	442.0	0	Phage major capsid protein, HK97 family	N/A
eggNOG-mapper	UHGV-0206001_24	742740.HMPREF9474_04304	390.0	0	Phage capsid family	N/A
Pfam	UHGV-0206001_24	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0206001_24	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0206001_24	PF05065,PF09032,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0206001_25	K06904	123.5	2.2e-36	N/A	N/A
PHROG	UHGV-0206001_25	phrog_80	132.4	4.4e-39	head maturation protease	head and packaging
UniRef90	UHGV-0206001_25	UniRef90_A0A1C5W530	275.0	0	Phage prohead protease, HK97 family	N/A
eggNOG-mapper	UHGV-0206001_25	411471.SUBVAR_05851	256.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0206001_25	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0206001_25	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0206001_25	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0206001_25	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0206001_26	phrog_12	116.9	1.4e-34	portal protein	head and packaging
UniRef90	UHGV-0206001_26	UniRef90_UPI00195C5E58	649.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0206001_26	742740.HMPREF9474_04306	593.0	0	Phage portal protein	N/A
Pfam	UHGV-0206001_26	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0206001_26	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0206001_26	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0206001_27	phrog_9	333.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0206001_27	UniRef90_A0A8J6TY49	894.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0206001_27	411471.SUBVAR_05848	791.0	0	large subunit	N/A
Pfam	UHGV-0206001_27	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0206001_27	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0206001_27	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0206001_27	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0206001_28	phrog_1066	88.4	6.4e-26	N/A	unknown function
eggNOG-mapper	UHGV-0206001_28	1094508.Tsac_2428	98.2	5.16e-25	N/A	N/A
structural_annotation	UHGV-0206001_28	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0206001_29	phrog_119	66.9	2.7e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0206001_29	UniRef90_UPI00195B555F	181.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0206001_29	543734.LCABL_11060	104.0	9.56e-28	HNH endonuclease	N/A
Pfam	UHGV-0206001_29	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0206001_29	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0206001_30	phrog_36	68.4	1.1e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0206001_30	UniRef90_A0A6N8H4L3	169.0	0	Sigma70_r4 domain-containing protein	N/A
Pfam	UHGV-0206001_30	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-0206001_30	PF04545,TIGR02984	N/A	N/A	N/A	N/A
KOfam	UHGV-0206001_32	K03497	82.4	8.5e-24	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0206001_32	phrog_4715	127.0	3.4e-38	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0206001_32	UniRef90_A0A1Q6T350	835.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0206001_32	411471.SUBVAR_05842	376.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0206001_32	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0206001_32	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0206001_32	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0206001_33	K03496	218.5	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0206001_33	phrog_164	167.7	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0206001_33	UniRef90_A0A1Q6T3I8	447.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0206001_33	411471.SUBVAR_05839	288.0	0	AAA domain	N/A
Pfam	UHGV-0206001_33	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0206001_33	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0206001_33	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0206001_34	K02314	231.2	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0206001_34	phrog_19	214.7	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0206001_34	UniRef90_A0A6N8GZX5	808.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0206001_34	411471.SUBVAR_05838	422.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0206001_34	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0206001_34	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0206001_34	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0206001_34	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0206001_35	phrog_678	75.6	7.5e-22	replication initiation O-like	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0206001_35	UniRef90_A0A6N8H2D2	377.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0206001_35	411471.SUBVAR_05835	150.0	2.17005e-41	Helix-turn-helix domain	N/A
Pfam	UHGV-0206001_35	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0206001_35	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0206001_35	PF13730,MF_01909,TIGR04176,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0206001_36	K03111	131.2	1.2e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0206001_36	phrog_44	139.5	1.90002e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0206001_36	UniRef90_A0A1Q6T3F1	259.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0206001_36	411471.SUBVAR_04646	182.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0206001_36	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0206001_36	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0206001_36	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0206001_36	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0206001_36	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0206001_37	phrog_1029	197.3	0	N/A	unknown function
UniRef90	UHGV-0206001_37	UniRef90_A0A0P0N9M8	130.0	1.9e-33	Phage-related protein	N/A
eggNOG-mapper	UHGV-0206001_37	411471.SUBVAR_05833	237.0	0	N/A	N/A
structural_annotation	UHGV-0206001_37	PF10065,COG5532	N/A	N/A	N/A	N/A
PHROG	UHGV-0206001_38	phrog_997	110.1	1.3e-32	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0206001_38	UniRef90_A0A316QIB2	78.2	4.13e-16	Replication terminator protein	N/A
eggNOG-mapper	UHGV-0206001_38	411471.SUBVAR_05832	158.0	0	N/A	N/A
PHROG	UHGV-0206001_40	phrog_7566	73.1	2.7e-21	N/A	unknown function
eggNOG-mapper	UHGV-0206001_40	411471.SUBVAR_05830	112.0	6.83e-31	N/A	N/A
COG	UHGV-0206001_41	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
structural_annotation	UHGV-0206001_41	PF04606,NF007241	N/A	N/A	N/A	N/A
PHROG	UHGV-0206001_42	phrog_72	49.9	0.000000000000047	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0206001_42	411471.SUBVAR_05829	211.0	0	N/A	N/A
structural_annotation	UHGV-0206001_42	PF05772,NF007281	N/A	N/A	N/A	N/A
COG	UHGV-0206001_43	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0206001_43	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0206001_44	phrog_10280	52.8	0.0000000000000037	N/A	unknown function
eggNOG-mapper	UHGV-0206001_44	1211640.K4JWC4_9CAUD	63.5	0.00000000022	N/A	N/A
UniRef90	UHGV-0206001_46	UniRef90_UPI0019572A8A	80.5	2.35e-18	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0206001_46	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0206001_46	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0206001	Yes	33,929	59	100	1
UHGV-0180682	No	33,951	59	100	1
UHGV-1775054	No	13,876	58	42	1