Viral OTU vOTU-051401

vOTU: vOTU-051401

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-051401
Number of Genomes	1
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00124 → vSUBFAM-02720 → vGENUS-08215 → vSUBGEN-07678 → vOTU-051401
Host Lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans
Viral Lifestyle	temperate

Representative Genome
Genome ID	UHGV-0380222
Biosample ID	SAMEA80953918
Length	37,733 bps
CheckV Completeness	100.00% (Complete)
CDS Count	59
CDS Density	94.88%
tRNA Count	0
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0380222_1	phrog_267	73.8	2.6e-21	major head protein	head and packaging
UniRef90	UHGV-0380222_1	UniRef90_A0A3A9JXK2	118.0	7.57e-29	P22 coat protein-protein 5 domain protein	N/A
eggNOG-mapper	UHGV-0380222_1	665956.HMPREF1032_03906	387.0	0	P22 coat protein-protein 5 domain protein	N/A
structural_annotation	UHGV-0380222_1	PF11651,MF_04119,TIGR04387	N/A	N/A	N/A	N/A
PHROG	UHGV-0380222_4	phrog_156	82.6	4.5e-24	portal protein	head and packaging
eggNOG-mapper	UHGV-0380222_4	665956.HMPREF1032_03886	961.0	0	N/A	N/A
structural_annotation	UHGV-0380222_4	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0380222_6	K06909	132.6	3.8e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0380222_6	phrog_979	167.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0380222_6	UniRef90_UPI0019677368	843.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0380222_6	665956.HMPREF1032_03884	795.0	0	Terminase-like family	N/A
Pfam	UHGV-0380222_6	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0380222_6	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0380222_6	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0380222_7	UniRef90_A0A0W7TNA7	204.0	0	N/A	N/A
eggNOG-mapper	UHGV-0380222_7	272630.MexAM1_META1p3985	77.0	4.49e-17	N/A	N/A
Pfam	UHGV-0380222_7	PF18932	N/A	N/A	N/A	DUF5681
structural_annotation	UHGV-0380222_8	PF03869,NF010256	N/A	N/A	N/A	N/A
PHROG	UHGV-0380222_14	phrog_2245	90.6	1.7e-26	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0380222_14	UniRef90_A0A4U9RLZ8	71.6	0.0000000000000243	N/A	N/A
eggNOG-mapper	UHGV-0380222_14	588581.Cpap_1498	69.7	0.0000000000000272	COG NOG14118 non supervised orthologous group	N/A
PHROG	UHGV-0380222_15	phrog_111	158.9	0	DNA methyltransferase	other
UniRef90	UHGV-0380222_15	UniRef90_A0A316S635	248.0	0	Adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0380222_15	1589751.A0A0C5AN16_9CAUD	202.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-0380222_15	oMTase_00015	195.6	0	orphan methyltransferase	RM
Pfam	UHGV-0380222_15	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0380222_15	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
PHROG	UHGV-0380222_19	phrog_38832	55.5	1.5e-21	N/A	unknown function
eggNOG-mapper	UHGV-0380222_19	665956.HMPREF1032_00143	80.1	6.07e-17	N/A	N/A
structural_annotation	UHGV-0380222_19	PF11717,TIGR02450	N/A	N/A	N/A	N/A
PHROG	UHGV-0380222_22	phrog_599	46.2	0.0000000000011	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0380222_22	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0380222_22	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-0380222_22	PF14354,NF007260	N/A	N/A	N/A	N/A
KOfam	UHGV-0380222_23	K00390	84.0	1.3e-24	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0380222_23	phrog_424	104.7	8.9e-31	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0380222_23	UniRef90_A0A372WY48	595.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-0380222_23	665956.HMPREF1032_02557	423.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0380222_23	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0380222_23	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0380222_23	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0380222_24	K00571	108.2	1e-31	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0380222_24	phrog_67	99.4	1.9e-30	DNA methyltransferase	other
UniRef90	UHGV-0380222_24	UniRef90_A0A3A6E967	528.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0380222_24	910314.HMPREF9220_0636	376.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0380222_24	MTase_II_00157	83.2	1.5e-25	Type II methyltransferase	RM
Pfam	UHGV-0380222_24	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0380222_24	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0380222_24	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0380222_26	K01160	71.5	2.2e-20	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0380222_26	phrog_34	78.4	1.1e-22	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0380222_26	UniRef90_UPI0006D84EB7	179.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
COG	UHGV-0380222_26	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0380222_26	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0380222_27	K02314	212.2	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0380222_27	phrog_19	223.5	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0380222_27	UniRef90_A0A3A6E5J4	780.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0380222_27	1203606.HMPREF1526_01325	139.0	3.37e-34	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0380222_27	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0380222_27	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0380222_27	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0380222_27	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0380222_28	phrog_20437	157.4	0	DNA replication initiation	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0380222_28	UniRef90_A0A3A6E2X3	498.0	0	N/A	N/A
eggNOG-mapper	UHGV-0380222_28	97138.C820_00626	194.0	0	N/A	N/A
Pfam	UHGV-0380222_28	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0380222_28	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0380222_28	PF14297	N/A	N/A	N/A	N/A
KOfam	UHGV-0380222_29	K03111	135.6	5.70001e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0380222_29	phrog_44	141.9	3.99931e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0380222_29	UniRef90_A0A3A6ECW8	276.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0380222_29	665956.HMPREF1032_00430	189.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0380222_29	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0380222_29	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0380222_29	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0380222_29	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0380222_29	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0380222_30	phrog_7566	85.0	5.9e-25	N/A	unknown function
eggNOG-mapper	UHGV-0380222_30	693746.OBV_24070	100.0	2.96e-26	N/A	N/A
PHROG	UHGV-0380222_31	phrog_72	60.5	2.2e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0380222_31	UniRef90_UPI001F3F3E5C	89.4	1.86e-19	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0380222_31	1304866.K413DRAFT_1197	91.3	5.89e-21	N/A	N/A
PHROG	UHGV-0380222_32	phrog_659	199.5	0	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0380222_32	UniRef90_UPI0009E55993	413.0	0	N/A	N/A
eggNOG-mapper	UHGV-0380222_32	1507.HMPREF0262_00431	212.0	0	N/A	N/A
Pfam	UHGV-0380222_32	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0380222_32	PF06378,COG4712	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0380222_36	cluster_35670	142.0	0	NA	N/A
structural_annotation	UHGV-0380222_36	NF042413	N/A	N/A	N/A	N/A
KOfam	UHGV-0380222_42	K22300	44.0	0.0000000000043	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0380222_42	UniRef90_A0A316Q0H9	121.0	5.4e-35	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0380222_42	936375.HMPREF1152_1045	73.2	1.56e-16	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0380222_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0380222_42	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0380222_42	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0380222_43	phrog_2967	68.5	9.2e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0380222_43	UniRef90_A0A316PM85	202.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0380222_43	411469.EUBHAL_01994	110.0	3.34e-29	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0380222_43	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0380222_43	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0380222_43	PF08667,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0380222_44	UniRef90_A0A316RN54	56.2	0.00000238	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0380222_44	428125.CLOLEP_02739	82.0	2.7e-17	N/A	N/A
COG	UHGV-0380222_44	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
KOfam	UHGV-0380222_47	K19167	139.8	2.4e-41	abiQ; protein AbiQ	N/A
PHROG	UHGV-0380222_47	phrog_9764	143.8	8.60397e-43	N/A	unknown function
UniRef90	UHGV-0380222_47	UniRef90_A0A845R8D8	163.0	0	Type III toxin-antitoxin system ToxN/AbiQ family toxin	N/A
eggNOG-mapper	UHGV-0380222_47	1519439.JPJG01000060_gene1906	149.0	7.28675e-44	Toxin ToxN, type III toxin-antitoxin system	N/A
PADLOC	UHGV-0380222_47	AbiQ	158.2	0	AbiQ	Abi
Pfam	UHGV-0380222_47	PF13958	N/A	N/A	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin
KOfam	UHGV-0380222_48	K06400	388.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0380222_48	phrog_95	388.8	0	integrase	integration and excision
UniRef90	UHGV-0380222_48	UniRef90_A0A3A6E4S5	898.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0380222_48	1291050.JAGE01000001_gene2185	348.0	0	N/A	N/A
Pfam	UHGV-0380222_48	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0380222_48	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0380222_48	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0380222_48	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0380222_48	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0380222_49	phrog_2563	41.4	0.00000000001	N/A	unknown function
eggNOG-mapper	UHGV-0380222_49	871968.DESME_08840	323.0	0	N/A	N/A
PHROG	UHGV-0380222_51	phrog_199	61.3	1.2e-17	holin	lysis
UniRef90	UHGV-0380222_51	UniRef90_A0A3A6DRL0	305.0	0	Holin	N/A
eggNOG-mapper	UHGV-0380222_51	1121344.JHZO01000003_gene684	165.0	0	toxin secretion phage lysis holin	N/A
Pfam	UHGV-0380222_51	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0380222_51	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0380222_51	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0380222_51	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0380222_52	K19304	93.4	2.6e-27	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0380222_52	phrog_7767	86.0	3.7e-25	metallo-endopeptidase	other
UniRef90	UHGV-0380222_52	UniRef90_A0A0D8J327	521.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0380222_52	665956.HMPREF1032_00102	494.0	0	heme binding	N/A
Pfam	UHGV-0380222_52	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0380222_52	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0380222_52	PF01551,NF040883,COG0739	N/A	N/A	N/A	N/A
PHROG	UHGV-0380222_53	phrog_134	53.3	0.0000000000000035	N/A	unknown function
UniRef90	UHGV-0380222_53	UniRef90_A0A372V0Q1	79.0	1.1e-18	XkdX family protein	N/A
eggNOG-mapper	UHGV-0380222_53	697281.Mahau_0596	48.1	0.00000031	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-0380222_53	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
NCBIFam	UHGV-0380222_53	TIGR01669.1	N/A	N/A	XkdX family protein	N/A
structural_annotation	UHGV-0380222_53	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-0380222_54	phrog_24451	73.1	3.8e-21	N/A	unknown function
eggNOG-mapper	UHGV-0380222_54	1408437.JNJN01000040_gene189	77.4	1.17e-16	N/A	N/A
KOfam	UHGV-0380222_55	K19721	112.1	1.6e-33	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	N/A
PHROG	UHGV-0380222_55	phrog_819	115.4	6.39973e-42	tail protein	tail
UniRef90	UHGV-0380222_55	UniRef90_UPI0009EC2831	608.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0380222_55	665956.HMPREF1032_03918	99.4	4.29e-20	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	N/A
Pfam	UHGV-0380222_55	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-0380222_56	phrog_3287	142.0	4.79945e-42	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0380222_56	665956.HMPREF1032_03917	1255.0	0	N/A	N/A
structural_annotation	UHGV-0380222_56	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0380222_57	PF20387	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0380222_58	PF07100,COG4288	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0380222_59	665956.HMPREF1032_03906	137.0	2.5e-39	P22 coat protein-protein 5 domain protein	N/A

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0380222	Yes	37,733	51	100	1