Viral OTU vOTU-053709

vOTU: vOTU-053709

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-053709
Number of Genomes	4
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00060 → vSUBFAM-05120 → vGENUS-10388 → vSUBGEN-13514 → vOTU-053709
Host Lineage
Viral Lifestyle	temperate

Representative Genome
Genome ID	UHGV-1146144
Biosample ID	N/A
Length	34,209 bps
CheckV Completeness	100.00% (Complete)
CDS Count	55
CDS Density	91.18%
tRNA Count	0
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1146144_1	K14059	124.0	2.3e-36	int; integrase	N/A
PHROG	UHGV-1146144_1	phrog_1	153.1	2.8026e-45	integrase	integration and excision
UniRef90	UHGV-1146144_1	UniRef90_A0A8F2JBE6	556.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1146144_1	1235835.C814_03141	218.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1146144_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1146144_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1146144_1	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1146144_3	phrog_14556	44.4	0.0000000000013	N/A	unknown function
eggNOG-mapper	UHGV-1146144_3	572547.Amico_1146	63.9	0.00000000511	PFAM Endonuclease Exonuclease phosphatase	N/A
COG	UHGV-1146144_3	COG2374	N/A	N/A	Predicted extracellular nuclease	N/A
KOfam	UHGV-1146144_4	K22299	42.6	0.000000000013	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1146144_4	phrog_8	74.4	2.1e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-1146144_4	UniRef90_A0A8F2F1D4	144.0	2.17061e-42	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1146144_4	1027396.LMOSA_21110	79.3	1e-17	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1146144_4	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1146144_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1146144_4	PF12844,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1146144_5	UniRef90_A0A8F2F185	120.0	1.67e-34	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1146144_5	697329.Rumal_1107	47.8	0.00000129	DNA excision	N/A
Pfam	UHGV-1146144_5	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-1146144_5	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-1146144_5	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
PHROG	UHGV-1146144_7	phrog_6499	94.8	5.6e-28	transcriptional regulator	transcription regulation
UniRef90	UHGV-1146144_7	UniRef90_A0A8F2F0W6	280.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1146144_7	1094508.Tsac_2446	87.4	5.6e-20	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1146144_7	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1146144_7	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-1146144_7	PF01381,MF_00535,NF040522,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1146144_8	1235835.C814_03153	48.5	0.00000118	N/A	N/A
structural_annotation	UHGV-1146144_8	PF09035,NF040990	N/A	N/A	N/A	N/A
PHROG	UHGV-1146144_14	phrog_14970	289.5	0	N/A	unknown function
UniRef90	UHGV-1146144_14	UniRef90_A0A1C5NV07	202.0	0	DNA damage response protein A	N/A
eggNOG-mapper	UHGV-1146144_14	1226322.HMPREF1545_04073	243.0	0	double-strand break repair protein	N/A
Pfam	UHGV-1146144_14	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-1146144_14	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1146144_14	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1146144_15	phrog_72	51.9	0.000000000000011	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1146144_15	UniRef90_A0A8D9PDS2	114.0	1.65e-28	NinB protein	N/A
eggNOG-mapper	UHGV-1146144_15	445972.ANACOL_01825	125.0	1.13e-33	N/A	N/A
structural_annotation	UHGV-1146144_15	PF05772	N/A	N/A	N/A	N/A
KOfam	UHGV-1146144_16	K03111	144.8	9.09443e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1146144_16	phrog_44	136.5	1.7e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1146144_16	UniRef90_A0A8F2JB44	160.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1146144_16	555088.DealDRAFT_2203	131.0	7.37e-38	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1146144_16	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1146144_16	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1146144_16	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1146144_16	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1146144_16	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1146144_17	phrog_16304	71.5	1.2e-20	N/A	unknown function
UniRef90	UHGV-1146144_17	UniRef90_UPI001874F31C	62.0	0.0000000863	DnaD domain protein	N/A
eggNOG-mapper	UHGV-1146144_17	445972.ANACOL_03338	59.3	0.000000157	DnaD domain protein	N/A
Pfam	UHGV-1146144_17	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-1146144_17	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1146144_17	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-1146144_17	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1146144_17	PF19808	N/A	N/A	N/A	N/A
Pfam	UHGV-1146144_18	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
COG	UHGV-1146144_18	COG0458	N/A	N/A	Carbamoylphosphate synthase large subunit	N/A
PHROG	UHGV-1146144_20	phrog_20532	50.5	0.000000000000029	N/A	unknown function
UniRef90	UHGV-1146144_20	UniRef90_A0A8F2F1E3	184.0	0	Zinc finger CCCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1146144_20	478749.BRYFOR_05427	60.5	0.00000000772	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
COG	UHGV-1146144_20	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-1146144_20	MF_01691,TIGR03532,COG2171	N/A	N/A	N/A	N/A
PHROG	UHGV-1146144_21	phrog_954	215.6	0	DNA methyltransferase	other
UniRef90	UHGV-1146144_21	UniRef90_A0A109WCJ8	251.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1146144_21	679201.HMPREF9334_00469	251.0	0	methyltransferase	N/A
PADLOC	UHGV-1146144_21	MTase_II_00074	209.0	0	Type II methyltransferase	RM
COG	UHGV-1146144_21	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
structural_annotation	UHGV-1146144_21	PF01170,MF_01057,TIGR00446,COG4123	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1146144_23	908337.HMPREF9257_0550	79.0	1.93e-16	N/A	N/A
PHROG	UHGV-1146144_28	phrog_36	57.4	3.3e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1146144_28	UniRef90_UPI001CF8472C	52.0	0.00000945	N/A	N/A
eggNOG-mapper	UHGV-1146144_28	1540257.JQMW01000004_gene433	72.4	0.0000000000000185	N/A	N/A
structural_annotation	UHGV-1146144_28	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-1146144_29	phrog_7339	124.4	8.4e-37	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1146144_29	UniRef90_A0A8F2F0X6	508.0	0	Metallophosphoesterase	N/A
eggNOG-mapper	UHGV-1146144_29	443254.Marpi_0340	87.8	8.51e-18	metallophosphoesterase	N/A
Pfam	UHGV-1146144_29	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
COG	UHGV-1146144_29	COG1408	N/A	N/A	Predicted phosphohydrolase, MPP superfamily	N/A
structural_annotation	UHGV-1146144_29	PF12850,MF_00325,NF003118,COG1311	N/A	N/A	N/A	N/A
PHROG	UHGV-1146144_30	phrog_21498	301.9	0	N/A	unknown function
UniRef90	UHGV-1146144_30	UniRef90_UPI0016246E09	238.0	0	chromosome partitioning protein ParB	N/A
eggNOG-mapper	UHGV-1146144_30	1095750.HMPREF9970_2290	244.0	0	chromosome segregation	N/A
COG	UHGV-1146144_30	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1146144_30	PF05869,TIGR01712	N/A	N/A	N/A	N/A
UniRef90	UHGV-1146144_31	UniRef90_A7VTB3	195.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1146144_31	428125.CLOLEP_01805	195.0	0	N/A	N/A
structural_annotation	UHGV-1146144_31	PF13542	N/A	N/A	N/A	N/A
KOfam	UHGV-1146144_32	K06909	63.8	2.4e-18	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1146144_32	phrog_29775	250.8	0	N/A	unknown function
UniRef90	UHGV-1146144_32	UniRef90_A0A316T8R1	634.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1146144_32	428125.CLOLEP_01804	622.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1146144_32	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-1146144_32	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1146144_32	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1146144_32	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1146144_33	phrog_533	357.1	0	portal protein	head and packaging
UniRef90	UHGV-1146144_33	UniRef90_A0A843J1A3	626.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1146144_33	428125.CLOLEP_01803	518.0	0	N/A	N/A
Pfam	UHGV-1146144_33	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-1146144_33	TIGR01542.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-1146144_33	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1146144_34	phrog_581	216.8	0	minor head protein	head and packaging
UniRef90	UHGV-1146144_34	UniRef90_A7VTB0	237.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-1146144_34	428125.CLOLEP_01802	237.0	0	N/A	N/A
Pfam	UHGV-1146144_34	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1146144_34	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1146144_34	PF06152	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1146144_37	889378.Spiaf_0240	52.4	0.000002	Belongs to the Dps family	N/A
COG	UHGV-1146144_37	COG0783	N/A	N/A	DNA-binding ferritin-like protein (oxidative damage protectant)	N/A
structural_annotation	UHGV-1146144_37	PF14530,MF_01441,NF009990,COG0783	N/A	N/A	N/A	N/A
PHROG	UHGV-1146144_39	phrog_422	203.0	0	major head protein	head and packaging
UniRef90	UHGV-1146144_39	UniRef90_R5SNJ0	192.0	0	Lj928 prophage protein	N/A
eggNOG-mapper	UHGV-1146144_39	1122925.KB895382_gene3573	195.0	0	N/A	N/A
Pfam	UHGV-1146144_39	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-1146144_39	PF19821,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1146144_40	phrog_541	94.3	9.6e-28	head-tail adaptor	connector
UniRef90	UHGV-1146144_40	UniRef90_F5L4I5	75.5	0.0000000000000115	Protein gp8	N/A
eggNOG-mapper	UHGV-1146144_40	986075.CathTA2_0698	75.5	0.00000000000000193	N/A	N/A
UniRef90	UHGV-1146144_41	UniRef90_UPI001D06E7F2	83.2	3.89e-18	minor capsid protein	N/A
structural_annotation	UHGV-1146144_41	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1146144_42	phrog_556	53.9	0.000000000000003	minor head protein	head and packaging
UniRef90	UHGV-1146144_42	UniRef90_R5RS12	63.2	0.000000000372	Putative minor capsid protein	N/A
Pfam	UHGV-1146144_42	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1146144_42	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1146144_43	phrog_913	53.3	0.0000000000000044	minor head protein	head and packaging
structural_annotation	UHGV-1146144_43	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1146144_44	phrog_820	120.1	1.2e-35	major tail protein	tail
UniRef90	UHGV-1146144_44	UniRef90_A0A3A6EPU8	140.0	1.49e-38	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1146144_44	428125.CLOLEP_00178	201.0	0	Belongs to the glycosyl hydrolase family 6	N/A
COG	UHGV-1146144_44	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1146144_44	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1146144_45	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1146144_46	phrog_706	130.7	1.3e-39	N/A	unknown function
UniRef90	UHGV-1146144_46	UniRef90_A0A143ZUS4	129.0	2.33e-34	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1146144_46	935836.JAEL01000086_gene44	105.0	1.05e-25	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1146144_46	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1146144_46	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1146144_47	phrog_9959	153.9	0	tail length tape measure protein	tail
UniRef90	UHGV-1146144_47	UniRef90_A0A2S0L695	211.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1146144_47	936375.HMPREF1152_1084	211.0	0	tape measure	N/A
Pfam	UHGV-1146144_47	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1146144_47	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1146144_47	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1146144_47	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1146144_48	666686.B1NLA3E_01265	105.0	6.27e-21	glycerophosphodiester phosphodiesterase activity	N/A
COG	UHGV-1146144_48	COG0584	N/A	N/A	Glycerophosphoryl diester phosphodiesterase	N/A
structural_annotation	UHGV-1146144_48	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1146144_49	phrog_18500	43.6	0.0000000000065	N/A	unknown function
eggNOG-mapper	UHGV-1146144_49	1094508.Tsac_2414	82.0	1.32e-17	N/A	N/A
Pfam	UHGV-1146144_49	PF12571	N/A	N/A	Phage tail-collar fibre protein	DUF3751
structural_annotation	UHGV-1146144_49	PF12571	N/A	N/A	N/A	N/A
COG	UHGV-1146144_50	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
COG	UHGV-1146144_51	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
KOfam	UHGV-1146144_52	K07273	183.5	0	acm; lysozyme	N/A
PHROG	UHGV-1146144_52	phrog_291	140.1	1.79997e-41	endolysin	lysis
UniRef90	UHGV-1146144_52	UniRef90_A0A316LE88	676.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-1146144_52	1235792.C808_05255	227.0	0	Lysin motif	N/A
Pfam	UHGV-1146144_52	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1146144_52	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-1146144_52	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-1146144_52	PF01183,PF11623,COG3757,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-1146144_54	phrog_1129	85.2	4.3e-25	holin	lysis
UniRef90	UHGV-1146144_54	UniRef90_A0A8F2F1B6	160.0	0	Phage holin family protein	N/A
eggNOG-mapper	UHGV-1146144_54	1292035.H476_0999	72.0	0.00000000000000151	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1146144_54	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1146144_54	PF16079	N/A	N/A	N/A	N/A
KOfam	UHGV-1146144_55	K19167	57.0	4.5e-16	abiQ; protein AbiQ	N/A
PHROG	UHGV-1146144_55	phrog_8049	61.0	2e-17	N/A	unknown function
eggNOG-mapper	UHGV-1146144_55	888821.HMPREF9394_0998	147.0	4.18988e-43	N/A	N/A
structural_annotation	UHGV-1146144_55	PF13958	N/A	N/A	N/A	N/A

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1146144	Yes	34,209	47	100	1
UHGV-1245206	No	16,956	47	50	1
UHGV-0895878	No	14,643	48	43	1
UHGV-0952207	No	12,398	46	36	1