Viral OTU vOTU-060864

vOTU: vOTU-060864

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-060864
Number of Genomes	3
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00009 → vSUBFAM-00597 → vGENUS-15839 → vSUBGEN-27973 → vOTU-060864
Host Lineage	Bacteria → Bacteroidota → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes shahii
Viral Lifestyle	temperate

Representative Genome
Genome ID	UHGV-0073409
Biosample ID	SAMEA2737809
Length	45,508 bps
CheckV Completeness	99.79% (High-quality)
CDS Count	73
CDS Density	88.98%
tRNA Count	2
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.79)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0073409_1	1033732.CAHI01000009_gene1582	486.0	0	COG NOG27188 non supervised orthologous group	N/A
KOfam	UHGV-0073409_2	K04763	66.9	3.7e-19	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0073409_2	phrog_1	72.9	6.7e-21	integrase	integration and excision
UniRef90	UHGV-0073409_2	UniRef90_UPI0018735313	775.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0073409_2	1433126.BN938_1066	460.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0073409_2	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-0073409_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0073409_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0073409_2	PF00589,MF_01808,NF002331,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0073409_6	PF10628	N/A	N/A	N/A	N/A
UniRef90	UHGV-0073409_11	UniRef90_A0A8D9UI10	79.3	3.55e-17	Chromosomal replication initiator protein	N/A
eggNOG-mapper	UHGV-0073409_11	445970.ALIPUT_01633	97.8	3.37e-25	Bacterial dnaA protein helix-turn-helix	N/A
structural_annotation	UHGV-0073409_11	PF08299,NF004688	N/A	N/A	N/A	N/A
PHROG	UHGV-0073409_12	phrog_15610	115.3	2.4e-34	protease	other
UniRef90	UHGV-0073409_12	UniRef90_A0A0J6CFE9	125.0	3.52e-35	Membrane protein	N/A
eggNOG-mapper	UHGV-0073409_12	1347393.HG726024_gene2889	127.0	5.07e-37	N/A	N/A
PHROG	UHGV-0073409_13	phrog_26448	50.8	0.0000000000000065	N/A	unknown function
eggNOG-mapper	UHGV-0073409_13	1122985.HMPREF1991_01566	53.5	0.0000014	N/A	N/A
Pfam	UHGV-0073409_13	PF20647	N/A	N/A	N/A	DUF6808
structural_annotation	UHGV-0073409_13	PF20647	N/A	N/A	N/A	N/A
PHROG	UHGV-0073409_14	phrog_873	124.8	6.9e-37	endolysin	head and packaging
UniRef90	UHGV-0073409_14	UniRef90_UPI0018ABA41D	270.0	0	structural protein P5	N/A
eggNOG-mapper	UHGV-0073409_14	411477.PARMER_01682	191.0	0	N/A	N/A
UniRef90	UHGV-0073409_15	UniRef90_UPI0018A97727	268.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0073409_15	445970.ALIPUT_01637	127.0	8.46e-35	Bacteriophage holin family	N/A
Pfam	UHGV-0073409_15	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
structural_annotation	UHGV-0073409_15	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0073409_19	phrog_21217	87.9	1.3e-25	N/A	unknown function
PHROG	UHGV-0073409_20	phrog_14295	123.7	7.6e-38	N/A	unknown function
eggNOG-mapper	UHGV-0073409_20	1235803.C825_02656	244.0	0	N/A	N/A
COG	UHGV-0073409_20	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0073409_21	phrog_33698	113.0	0	N/A	unknown function
UniRef90	UHGV-0073409_21	UniRef90_UPI001873A18B	580.0	0	BACON domain-containing protein	N/A
eggNOG-mapper	UHGV-0073409_21	742767.HMPREF9456_03372	187.0	0	N/A	N/A
structural_annotation	UHGV-0073409_21	PF15006,NF041425,COG1470,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0073409_22	PF19266,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0073409_24	PF05561	N/A	N/A	N/A	N/A
PHROG	UHGV-0073409_28	phrog_10	81.2	1.6e-23	major head protein	head and packaging
UniRef90	UHGV-0073409_28	UniRef90_A0A1V5ID18	202.0	0	Phage capsid family protein	N/A
structural_annotation	UHGV-0073409_28	PF05065,PF15188,MF_04133,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0073409_29	K06904	118.9	6.1e-35	N/A	N/A
PHROG	UHGV-0073409_29	phrog_80	115.6	6.1e-34	head maturation protease	head and packaging
UniRef90	UHGV-0073409_29	UniRef90_UPI000B385EC9	241.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0073409_29	449673.BACSTE_00581	143.0	3.04e-39	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0073409_29	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0073409_29	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0073409_29	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0073409_29	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0073409_30	phrog_12	55.8	4.8e-16	portal protein	head and packaging
UniRef90	UHGV-0073409_30	UniRef90_A0A8E4ZCV9	86.7	0.0000000000000088	Portal protein	N/A
eggNOG-mapper	UHGV-0073409_30	449673.BACSTE_00582	89.0	2.38e-16	Phage portal protein	N/A
Pfam	UHGV-0073409_30	PF04860	N/A	N/A	Phage portal protein	Phage_portal
structural_annotation	UHGV-0073409_30	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0073409_31	K06909	176.3	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0073409_31	phrog_2	76.4	6.3e-22	terminase large subunit	head and packaging
UniRef90	UHGV-0073409_31	UniRef90_A0A497PCX3	238.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0073409_31	313596.RB2501_01375	196.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0073409_31	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0073409_31	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0073409_31	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0073409_32	phrog_606	80.0	3.2e-23	terminase small subunit	head and packaging
UniRef90	UHGV-0073409_32	UniRef90_A0A6J7X176	89.4	1.1e-19	DNA-packaging protein gp3	N/A
eggNOG-mapper	UHGV-0073409_32	266835.14021430	72.4	0.0000000000000891	DNA-packaging protein gp3	N/A
Pfam	UHGV-0073409_32	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0073409_32	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0073409_33	phrog_5783	88.8	1.54143e-44	N/A	unknown function
UniRef90	UHGV-0073409_33	UniRef90_A0A143XLU0	338.0	0	NYN domain protein	N/A
eggNOG-mapper	UHGV-0073409_33	1501391.LG35_06470	162.0	0	NYN domain	N/A
Pfam	UHGV-0073409_33	PF01936	N/A	N/A	NYN domain	NYN
COG	UHGV-0073409_33	COG1432	N/A	N/A	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	N/A
structural_annotation	UHGV-0073409_33	PF01936,TIGR00288,COG1432	N/A	N/A	N/A	N/A
UniRef90	UHGV-0073409_34	UniRef90_A0A396MBG1	147.0	7.00649e-45	N/A	N/A
eggNOG-mapper	UHGV-0073409_34	445970.ALIPUT_01584	147.0	2.8026e-45	N/A	N/A
Pfam	UHGV-0073409_34	PF16476	N/A	N/A	N/A	DUF5053
structural_annotation	UHGV-0073409_34	PF16476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0073409_35	UniRef90_F0R799	52.4	0.0000000656	Type III restriction protein res subunit	N/A
eggNOG-mapper	UHGV-0073409_35	667015.Bacsa_2379	52.4	0.000000011	SPTR ArsR-family transcription regulator	N/A
KOfam	UHGV-0073409_36	K07504	450.3	0	K07504; predicted type IV restriction endonuclease	N/A
PHROG	UHGV-0073409_36	phrog_4225	429.2	0	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0073409_36	UniRef90_UPI0018ABC42E	637.0	0	type I restriction endonuclease	N/A
eggNOG-mapper	UHGV-0073409_36	471854.Dfer_3124	407.0	0	Type I restriction enzyme R protein N terminus (HSDR_N)	N/A
Pfam	UHGV-0073409_36	PF04313	N/A	N/A	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
COG	UHGV-0073409_36	COG4748	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0073409_36	PF13588,TIGR04256,COG4748	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0073409_37	742767.HMPREF9456_03308	52.0	0.000000528	N/A	N/A
structural_annotation	UHGV-0073409_37	PF09629,MF_00749,TIGR00739,COG5475	N/A	N/A	N/A	N/A
Pfam	UHGV-0073409_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0073409_38	NF010465,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0073409_40	K22300	58.0	2.4e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0073409_40	phrog_8	58.4	1.9e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0073409_40	UniRef90_UPI001D0692D6	168.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0073409_40	1122985.HMPREF1991_02233	85.1	5.62e-19	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0073409_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0073409_40	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0073409_40	PF01381,NF007257,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0073409_42	K07684	50.8	0.000000000000037	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	N/A
UniRef90	UHGV-0073409_42	UniRef90_A0A5B5VJJ0	228.0	0	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0073409_42	1116472.MGMO_177c00100	51.6	0.00000421	helix_turn_helix, Lux Regulon	N/A
Pfam	UHGV-0073409_42	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-0073409_42	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
structural_annotation	UHGV-0073409_42	PF00196,MF_00674,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0073409_44	phrog_4973	43.3	0.0000000000057	N/A	unknown function
Pfam	UHGV-0073409_44	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0073409_44	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
dbAPIS	UHGV-0073409_51	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
PHROG	UHGV-0073409_53	phrog_561	169.1	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0073409_53	UniRef90_UPI001C6361B5	205.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0073409_53	1129145.H2BD49_9CAUD	204.0	0	DNA metabolic process	N/A
structural_annotation	UHGV-0073409_53	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0073409_54	K01143	68.8	1.1e-19	exo; exodeoxyribonuclease (lambda-induced) [EC:3.1.11.3]	N/A
PHROG	UHGV-0073409_54	phrog_149	125.7	3.9e-37	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0073409_54	UniRef90_G5H8Z1	236.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0073409_54	742725.HMPREF9450_02077	236.0	0	YqaJ-like viral recombinase domain	N/A
Pfam	UHGV-0073409_54	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
structural_annotation	UHGV-0073409_54	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
UniRef90	UHGV-0073409_56	UniRef90_A0A840CR27	55.5	0.000000299	ElaB/YqjD/DUF883 family membrane-anchored ribosome-binding protein	N/A
eggNOG-mapper	UHGV-0073409_56	742725.HMPREF9450_02078	109.0	4.38e-29	N/A	N/A
PHROG	UHGV-0073409_57	phrog_16706	220.0	0	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0073409_57	UniRef90_A6L485	202.0	0	N/A	N/A
eggNOG-mapper	UHGV-0073409_57	435590.BVU_2853	202.0	0	N/A	N/A
Pfam	UHGV-0073409_57	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0073409_57	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0073409_57	PF14297	N/A	N/A	N/A	N/A
PHROG	UHGV-0073409_58	phrog_1770	99.7	3.3e-29	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0073409_58	202954.BBNK01000034_gene3798	149.0	1.26117e-44	N/A	N/A
structural_annotation	UHGV-0073409_58	PF02075,MF_00034,NF000711,COG2410	N/A	N/A	N/A	N/A
KOfam	UHGV-0073409_59	K21919	102.7	3.6e-30	KCTD9; BTB/POZ domain-containing protein KCTD9	N/A
PHROG	UHGV-0073409_59	phrog_31265	90.5	3.3e-26	N/A	unknown function
UniRef90	UHGV-0073409_59	UniRef90_A0A5B5VMT7	210.0	0	Pentapeptide repeat-containing protein	N/A
eggNOG-mapper	UHGV-0073409_59	1226322.HMPREF1545_00011	120.0	4.54e-31	Pentapeptide repeats (8 copies)	N/A
Pfam	UHGV-0073409_59	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
Pfam	UHGV-0073409_59	PF19062	N/A	N/A	N/A	DUF5758
COG	UHGV-0073409_59	COG1357	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0073409_59	PF19062,PF13599,NF011744,COG1357	N/A	N/A	N/A	N/A
KOfam	UHGV-0073409_60	K00390	66.8	2.4e-32	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0073409_60	phrog_424	175.9	0	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0073409_60	UniRef90_A0A143XJM5	540.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-0073409_60	1121098.HMPREF1534_01084	423.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
PADLOC	UHGV-0073409_60	SspD_00001	65.0	7.8e-21	SspD	SSP
Pfam	UHGV-0073409_60	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0073409_60	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0073409_60	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0073409_66	phrog_2776	45.7	0.00000000000076	N/A	unknown function
UniRef90	UHGV-0073409_66	UniRef90_UPI001297AEBA	283.0	0	MmcB family DNA repair protein	N/A
eggNOG-mapper	UHGV-0073409_66	742725.HMPREF9450_02087	91.7	6.72e-20	N/A	N/A
PHROG	UHGV-0073409_67	phrog_874	88.7	6.5e-26	N/A	unknown function
eggNOG-mapper	UHGV-0073409_67	762968.HMPREF9441_00541	211.0	0	N/A	N/A
structural_annotation	UHGV-0073409_67	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0073409_68	445970.ALIPUT_02677	84.3	5.66e-18	N/A	N/A
PHROG	UHGV-0073409_70	phrog_8684	112.2	3e-33	N/A	unknown function
UniRef90	UHGV-0073409_70	UniRef90_UPI0018AC4DA6	153.0	2.8026e-45	YopX family protein	N/A
eggNOG-mapper	UHGV-0073409_70	742767.HMPREF9456_02048	88.6	1.28e-20	YopX protein	N/A
Pfam	UHGV-0073409_70	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0073409_70	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0073409_70	PF09643,TIGR01671	N/A	N/A	N/A	N/A
UniRef90	UHGV-0073409_73	UniRef90_UPI001896BBDB	149.0	5.60519e-45	MerR family transcriptional regulator	N/A
Pfam	UHGV-0073409_73	PF13411	N/A	N/A	MerR HTH family regulatory protein	MerR_1
COG	UHGV-0073409_73	COG2452	N/A	N/A	Predicted site-specific integrase-resolvase	N/A
structural_annotation	UHGV-0073409_73	PF12728,MF_01155,NF033787,COG3311	N/A	N/A	N/A	N/A

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0073409	Yes	45,508	49	100	1
UHGV-1439726	No	38,466	49	84	1
UHGV-0189470	No	38,462	49	84	1