Viral OTU vOTU-064385

vOTU: vOTU-064385

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-064385
Number of Genomes	3
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-08106 → vGENUS-22620 → vSUBGEN-44799 → vOTU-064385
Host Lineage	Bacteria → Firmicutes_A → Clostridia
Viral Lifestyle	temperate

Representative Genome
Genome ID	UHGV-0003393
Biosample ID	SAMEA4766059
Length	38,852 bps
CheckV Completeness	97.23% (High-quality)
CDS Count	53
CDS Density	92.67%
tRNA Count	3
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 97.23)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0003393_5	phrog_538	54.2	1.5e-20	minor tail protein	tail
Pfam	UHGV-0003393_5	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0003393_5	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0003393_6	phrog_33	75.7	9.6e-22	distal tail protein Dit	tail
Pfam	UHGV-0003393_6	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
structural_annotation	UHGV-0003393_6	PF05709,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0003393_7	K20478	76.0	6.2e-23	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-0003393_7	phrog_1533	303.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0003393_7	UniRef90_A0A315Y370	258.0	0	TP901 family phage tail tape measure protein (Fragment)	N/A
eggNOG-mapper	UHGV-0003393_7	180332.JTGN01000004_gene2272	443.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0003393_7	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0003393_7	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0003393_7	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-0003393_9	phrog_2175	55.2	0.0000000000000013	protein with Ig domain	other
eggNOG-mapper	UHGV-0003393_9	86416.Clopa_0346	129.0	2.82e-35	N/A	N/A
structural_annotation	UHGV-0003393_9	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0003393_10	UniRef90_A0A0Z8KW16	57.0	0.0000000394	Prophage pi2 protein 38	N/A
eggNOG-mapper	UHGV-0003393_10	1382358.JHVN01000024_gene1712	77.0	1.06e-16	N/A	N/A
structural_annotation	UHGV-0003393_10	PF20765	N/A	N/A	N/A	N/A
UniRef90	UHGV-0003393_11	UniRef90_UPI001627B74B	58.2	0.0000000261	HK97 gp10 family phage protein	N/A
structural_annotation	UHGV-0003393_11	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0003393_12	phrog_1951	77.4	1.2e-22	head-tail adaptor	connector
UniRef90	UHGV-0003393_12	UniRef90_A0A352IJI7	64.3	0.0000000000521	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0003393_12	588581.Cpap_1270	94.0	2.39e-23	N/A	N/A
structural_annotation	UHGV-0003393_12	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0003393_13	phrog_2550	65.6	4.4e-19	N/A	unknown function
eggNOG-mapper	UHGV-0003393_13	588581.Cpap_1271	80.5	1.23e-18	N/A	N/A
structural_annotation	UHGV-0003393_13	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0003393_14	phrog_10	172.1	0	major head protein	head and packaging
UniRef90	UHGV-0003393_14	UniRef90_G2G0W2	369.0	0	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-0003393_14	913865.DOT_5633	369.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0003393_14	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0003393_14	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0003393_14	COG2273	N/A	N/A	Beta-glucanase, GH16 family	N/A
structural_annotation	UHGV-0003393_14	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0003393_15	K06904	137.2	1.7e-40	N/A	N/A
PHROG	UHGV-0003393_15	phrog_80	171.0	0	head maturation protease	head and packaging
UniRef90	UHGV-0003393_15	UniRef90_H2JJA3	210.0	0	Phage prohead protease, HK97 family	N/A
eggNOG-mapper	UHGV-0003393_15	755731.Clo1100_0546	210.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0003393_15	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0003393_15	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0003393_15	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0003393_15	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0003393_16	phrog_12	170.9	0	portal protein	head and packaging
UniRef90	UHGV-0003393_16	UniRef90_H2JJA2	445.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0003393_16	755731.Clo1100_0545	445.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0003393_16	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0003393_16	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0003393_16	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0003393_16	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0003393_17	phrog_9	306.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0003393_17	UniRef90_A0A353J4P9	855.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0003393_17	398512.JQKC01000009_gene448	797.0	0	Phage Terminase	N/A
Pfam	UHGV-0003393_17	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0003393_17	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0003393_17	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0003393_17	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0003393_18	phrog_361	79.4	3.9e-23	terminase small subunit	head and packaging
UniRef90	UHGV-0003393_18	UniRef90_UPI001178973C	113.0	4.37e-30	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0003393_18	1226322.HMPREF1545_00112	115.0	1.1e-31	Phage terminase, small subunit	N/A
Pfam	UHGV-0003393_18	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0003393_18	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0003393_18	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0003393_19	K07451	56.1	7.3e-16	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0003393_19	phrog_119	84.7	1e-24	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0003393_19	UniRef90_A0A2G3Q3K7	127.0	4.18e-36	Endonuclease	N/A
eggNOG-mapper	UHGV-0003393_19	755731.Clo1100_0542	128.0	2.45e-37	HNH nucleases	N/A
Pfam	UHGV-0003393_19	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0003393_19	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0003393_19	TIGR02646	N/A	N/A	N/A	N/A
PHROG	UHGV-0003393_20	phrog_36	58.6	1.4e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0003393_20	UniRef90_U7UBY9	62.8	0.000000000705	PF07374 family protein	N/A
eggNOG-mapper	UHGV-0003393_20	1111454.HMPREF1250_0009	62.8	0.000000000118	N/A	N/A
structural_annotation	UHGV-0003393_20	PF07374,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0003393_23	phrog_32432	55.8	2.6e-16	N/A	unknown function
eggNOG-mapper	UHGV-0003393_23	332101.JIBU02000048_gene3723	65.9	0.00000000000272	N/A	N/A
PHROG	UHGV-0003393_27	phrog_757	199.8	0	DNA methyltransferase	other
UniRef90	UHGV-0003393_27	UniRef90_A0A355KVL2	343.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0003393_27	748224.HMPREF9436_03069	301.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0003393_27	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0003393_27	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0003393_28	K01160	51.0	0.000000000000039	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0003393_28	phrog_140	103.5	1.9e-30	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0003393_28	UniRef90_A0A3E0R2V2	157.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0003393_28	394503.Ccel_3302	155.0	0	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0003393_28	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0003393_28	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
KOfam	UHGV-0003393_29	K07505	409.4	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0003393_29	phrog_2597	1175.8	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0003393_29	UniRef90_A0A1C6CSE0	1014.0	0	Regulatory protein repA	N/A
eggNOG-mapper	UHGV-0003393_29	394503.Ccel_3304	991.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0003393_29	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0003393_29	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0003393_29	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0003393_29	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0003393_30	K17677	350.6	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0003393_30	phrog_16	280.0	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0003393_30	UniRef90_UPI001E556C58	843.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0003393_30	1235798.C817_03499	833.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0003393_30	mREase_IV_00005	129.2	3.8e-38	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0003393_30	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0003393_30	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0003393_30	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0003393_30	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0003393_31	phrog_2698	195.1	0	N/A	unknown function
UniRef90	UHGV-0003393_31	UniRef90_A0A1Y4RLK8	176.0	0	N/A	N/A
eggNOG-mapper	UHGV-0003393_31	1423734.JCM14202_3075	162.0	0	N/A	N/A
structural_annotation	UHGV-0003393_31	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0003393_32	phrog_124	220.9	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0003393_32	UniRef90_A0A3A8U6N7	376.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0003393_32	645991.Sgly_0321	370.0	0	AAA domain	N/A
Pfam	UHGV-0003393_32	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0003393_32	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0003393_34	K03546	70.7	1.7e-20	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0003393_34	phrog_1499	462.6	0	N/A	unknown function
UniRef90	UHGV-0003393_34	UniRef90_UPI000A812500	510.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0003393_34	1232449.BAHV02000010_gene2696	509.0	0	AAA domain	N/A
Pfam	UHGV-0003393_34	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0003393_34	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0003393_34	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0003393_37	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
PHROG	UHGV-0003393_39	phrog_4292	77.3	1.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-0003393_39	743719.PaelaDRAFT_5640	53.9	0.00000000312	N/A	N/A
COG	UHGV-0003393_41	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0003393_43	PF21441,TIGR04176,COG1846	N/A	N/A	N/A	N/A
UniRef90	UHGV-0003393_45	UniRef90_A0A3D4T7E0	68.6	0.0000000000000913	XRE family transcriptional regulator	N/A
structural_annotation	UHGV-0003393_45	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0003393_46	K22299	66.7	4.9e-19	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0003393_46	phrog_8	56.3	7.1e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0003393_46	UniRef90_A0A1M6S4A7	77.0	0.00000000000000232	Transcriptional regulator, contains XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-0003393_46	645991.Sgly_0310	83.2	4e-18	PFAM Peptidase S24 S26A S26B, conserved region	N/A
Pfam	UHGV-0003393_46	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0003393_46	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0003393_46	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0003393_47	phrog_1914	125.1	5.7e-37	N/A	unknown function
UniRef90	UHGV-0003393_47	UniRef90_A0A6I3PUM5	175.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0003393_47	1160721.RBI_I01604	126.0	7.7e-34	N/A	N/A
Pfam	UHGV-0003393_47	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0003393_47	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0003393_47	PF06114,COG2856	N/A	N/A	N/A	N/A
COG	UHGV-0003393_48	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-0003393_48	PF18899,NF007603,COG3586	N/A	N/A	N/A	N/A
KOfam	UHGV-0003393_49	K02342	183.3	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0003393_49	phrog_192	166.1	0	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0003393_49	UniRef90_A0A1C5N213	332.0	0	DNA polymerase III polC-type	N/A
eggNOG-mapper	UHGV-0003393_49	545694.TREPR_3623	239.0	0	EXOIII	N/A
PADLOC	UHGV-0003393_49	cd06127	142.8	1.80067e-42	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0003393_49	PF00929	N/A	N/A	Exonuclease	RNase_T
Pfam	UHGV-0003393_49	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
NCBIFam	UHGV-0003393_49	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-0003393_49	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-0003393_49	PF00929,PF00533,MF_00157,NF005289,COG0847,COG5275	N/A	N/A	N/A	N/A
KOfam	UHGV-0003393_50	K14059	219.9	0	int; integrase	N/A
PHROG	UHGV-0003393_50	phrog_1	189.4	0	integrase	integration and excision
UniRef90	UHGV-0003393_50	UniRef90_R6MY37	301.0	0	Putative integrase	N/A
eggNOG-mapper	UHGV-0003393_50	1507.HMPREF0262_00307	169.0	0	Phage integrase family	N/A
Pfam	UHGV-0003393_50	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0003393_50	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0003393_50	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0003393_50	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
Pfam	UHGV-0003393_51	PF04145	N/A	N/A	Ctr copper transporter family	Ctr
UniRef90	UHGV-0003393_52	UniRef90_A0A8J7VJM1	387.0	0	N/A	N/A
eggNOG-mapper	UHGV-0003393_52	1120746.CCNL01000015_gene2290	384.0	0	N/A	N/A
Pfam	UHGV-0003393_52	PF14199	N/A	N/A	N/A	DUF4317
structural_annotation	UHGV-0003393_52	PF14199,MF_00730,NF001557,COG3081	N/A	N/A	N/A	N/A

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0003393	Yes	38,852	45	97	1
UHGV-0015856	No	17,938	47	52	1
UHGV-2148280	No	13,524	47	37	1