Viral OTU vOTU-065707

vOTU: vOTU-065707

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-065707
Number of Genomes	1
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-06119 → vGENUS-14809 → vSUBGEN-25226 → vOTU-065707
Host Lineage
Viral Lifestyle	temperate

Representative Genome
Genome ID	UHGV-1489669
Biosample ID	N/A
Length	39,215 bps
CheckV Completeness	94.04% (High-quality)
CDS Count	50
CDS Density	96.61%
tRNA Count	0
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 94.04)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1489669_2	K06909	155.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1489669_2	phrog_979	138.1	1.80067e-42	terminase large subunit	head and packaging
UniRef90	UHGV-1489669_2	UniRef90_UPI0006875436	622.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1489669_2	1410650.JHWL01000003_gene2834	622.0	0	N/A	N/A
Pfam	UHGV-1489669_2	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1489669_2	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1489669_2	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
COG	UHGV-1489669_3	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
Pfam	UHGV-1489669_11	PF04448	N/A	N/A	N/A	DUF551
COG	UHGV-1489669_15	COG2452	N/A	N/A	Predicted site-specific integrase-resolvase	N/A
PHROG	UHGV-1489669_16	phrog_190	110.1	1.9e-32	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1489669_16	UniRef90_UPI0005D17CFF	106.0	1.08e-27	N/A	N/A
eggNOG-mapper	UHGV-1489669_16	742767.HMPREF9456_03412	99.8	6.75e-26	N/A	N/A
Pfam	UHGV-1489669_16	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1489669_16	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-1489669_18	phrog_9804	64.1	2.1e-18	N/A	unknown function
UniRef90	UHGV-1489669_18	UniRef90_UPI00189C0C42	58.2	0.000000176	replicative helicase loader/inhibitor	N/A
eggNOG-mapper	UHGV-1489669_18	903814.ELI_3550	52.4	0.00000396	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-1489669_18	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
PHROG	UHGV-1489669_19	phrog_8489	218.5	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1489669_19	UniRef90_A0A6A4UXR4	222.0	0	Phage replication initiation	N/A
eggNOG-mapper	UHGV-1489669_19	1139219.I569_00860	169.0	0	DnaD domain protein	N/A
COG	UHGV-1489669_19	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1489669_19	PF09681,TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-1489669_20	phrog_4292	56.1	4.4e-16	N/A	unknown function
eggNOG-mapper	UHGV-1489669_20	411473.RUMCAL_01910	54.3	0.00000000266	N/A	N/A
KOfam	UHGV-1489669_21	K01520	126.3	2.6e-37	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-1489669_21	phrog_135	115.0	5.1e-34	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1489669_21	UniRef90_A0A3D3Y5Q7	134.0	9.35e-38	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-1489669_21	1282887.AUJG01000016_gene1113	108.0	2.28e-27	N/A	N/A
Pfam	UHGV-1489669_21	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-1489669_21	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-1489669_21	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-1489669_21	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
KOfam	UHGV-1489669_22	K03111	115.5	7.2e-34	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1489669_22	phrog_44	132.2	2.5e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1489669_22	UniRef90_A7VPP2	121.0	3.27e-32	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1489669_22	428125.CLOLEP_00518	121.0	5.49e-33	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1489669_22	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1489669_22	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1489669_22	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1489669_22	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1489669_22	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1489669_23	phrog_4973	64.1	1.9e-18	N/A	unknown function
UniRef90	UHGV-1489669_23	UniRef90_A0A1W1YSW9	73.6	0.00000000000000179	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1489669_23	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1489669_23	PF14090,TIGR00373,COG4738	N/A	N/A	N/A	N/A
PHROG	UHGV-1489669_24	phrog_7370	45.4	0.0000000000011	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1489669_24	UniRef90_UPI001D05CADB	125.0	2.36e-35	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1489669_24	1235800.C819_02254	70.1	0.0000000000000665	HNH nucleases	N/A
Pfam	UHGV-1489669_24	PF13391	N/A	N/A	HNH endonuclease	HNH_2
PHROG	UHGV-1489669_25	phrog_72	47.1	0.00000000000013	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1489669_25	UniRef90_A0A8D9PDS2	128.0	2.69e-34	NinB protein	N/A
eggNOG-mapper	UHGV-1489669_25	445972.ANACOL_01825	153.0	5.60519e-45	N/A	N/A
structural_annotation	UHGV-1489669_25	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1489669_26	phrog_434	48.1	0.00000000000015	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1489669_26	1238184.CM001792_gene2549	71.6	0.000000000000556	N/A	N/A
Pfam	UHGV-1489669_26	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
structural_annotation	UHGV-1489669_26	PF12684,MF_03030,TIGR04328,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-1489669_27	phrog_8492	49.5	0.000000000000034	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1489669_27	UniRef90_A0A858BRQ4	202.0	0	N/A	N/A
eggNOG-mapper	UHGV-1489669_27	33035.JPJF01000135_gene5082	138.0	3.43e-38	N/A	N/A
Pfam	UHGV-1489669_27	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-1489669_27	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1489669_31	1235835.C814_03153	53.9	0.00000000995	N/A	N/A
structural_annotation	UHGV-1489669_31	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-1489669_33	UniRef90_R5J287	76.3	7.37e-17	Conserved domain protein	N/A
eggNOG-mapper	UHGV-1489669_33	596329.HMPREF0631_1345	64.7	0.000000000000458	N/A	N/A
Pfam	UHGV-1489669_33	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
structural_annotation	UHGV-1489669_33	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1489669_34	K22299	52.1	0.000000000000015	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1489669_34	phrog_8	51.4	0.000000000000022	transcriptional regulator	transcription regulation
UniRef90	UHGV-1489669_34	UniRef90_UPI0013796B8E	84.3	7.45e-19	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1489669_34	457421.CBFG_03225	73.9	0.00000000000000289	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-1489669_34	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1489669_34	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1489669_34	PF13560,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1489669_38	K14059	125.1	9e-37	int; integrase	N/A
PHROG	UHGV-1489669_38	phrog_1	160.3	0	integrase	integration and excision
UniRef90	UHGV-1489669_38	UniRef90_UPI000F051A1D	286.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1489669_38	693746.OBV_43340	241.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1489669_38	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1489669_38	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1489669_38	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1489669_39	phrog_881	88.6	3.3e-26	holin	lysis
UniRef90	UHGV-1489669_39	UniRef90_UPI001D0692FC	111.0	9.13e-31	phage holin	N/A
eggNOG-mapper	UHGV-1489669_39	742740.HMPREF9474_02251	110.0	2.85e-31	Putative phage holin Dp-1	N/A
Pfam	UHGV-1489669_39	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-1489669_39	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-1489669_40	phrog_9829	45.3	0.0000000000012	N/A	unknown function
KOfam	UHGV-1489669_41	K01448	96.0	4.2e-28	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1489669_41	phrog_435	135.4	4.6e-40	endolysin	lysis
UniRef90	UHGV-1489669_41	UniRef90_UPI0019CF7CF8	191.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1489669_41	665950.HMPREF1025_02673	198.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-1489669_41	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-1489669_41	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1489669_41	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1489669_41	PF01520,PF01471,MF_00562,TIGR02883,NF038080,COG0860,COG3409	N/A	N/A	N/A	N/A
Pfam	UHGV-1489669_42	PF18902	N/A	N/A	N/A	DUF5658
PHROG	UHGV-1489669_46	phrog_22978	891.3	0	N/A	unknown function
eggNOG-mapper	UHGV-1489669_46	1321782.HMPREF1986_00356	213.0	0	N/A	N/A
PHROG	UHGV-1489669_47	phrog_2649	66.5	5.9e-19	endolysin	lysis
UniRef90	UHGV-1489669_47	UniRef90_A0A358ARU4	231.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1489669_47	1410650.JHWL01000003_gene2815	149.0	5.73e-37	N/A	N/A
Pfam	UHGV-1489669_47	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
PHROG	UHGV-1489669_48	phrog_372	141.6	5.4006e-42	tail protein	tail
UniRef90	UHGV-1489669_48	UniRef90_A0A4S2AE74	91.7	0.00000000000000112	Pilus assembly protein	N/A
eggNOG-mapper	UHGV-1489669_48	552396.HMPREF0863_01449	97.8	2.23e-18	N/A	N/A
structural_annotation	UHGV-1489669_48	PF05895,MF_04116,TIGR04216,COG2373	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1489669_49	NF038340	N/A	N/A	N/A	N/A
PHROG	UHGV-1489669_50	phrog_511	242.1	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1489669_50	1410650.JHWL01000003_gene2827	297.0	0	N/A	N/A
structural_annotation	UHGV-1489669_50	PF11134,MF_00923,NF010730,COG4257,COG5156	N/A	N/A	N/A	N/A

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1489669	Yes	39,215	51	94	1