Viral OTU vOTU-068218

vOTU: vOTU-068218

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-068218
Number of Genomes	1
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00156 → vSUBFAM-03117 → vGENUS-06745 → vSUBGEN-04660 → vOTU-068218
Host Lineage	Bacteria → Spirochaetota → Spirochaetia → Treponematales → Treponemataceae → Treponema_D → Treponema_D succinifaciens
Viral Lifestyle	lytic

Representative Genome
Genome ID	UHGV-0017527
Biosample ID	SAMEA4765983
Length	53,362 bps
CheckV Completeness	99.46% (High-quality)
CDS Count	78
CDS Density	93.36%
tRNA Count	0
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.46)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0017527_20	K14440	63.6	2.6e-27	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0017527_20	phrog_62	313.3	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017527_20	UniRef90_A0A0F9V6I3	284.0	0	Helicase C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0017527_20	1151292.QEW_4405	159.0	5e-40	SNF2 family N-terminal domain	N/A
PADLOC	UHGV-0017527_20	DpdE_00003	41.1	6.2e-17	DpdE	DPD
Pfam	UHGV-0017527_20	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0017527_20	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0017527_20	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0017527_20	PF16203,PF04851,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-0017527_24	phrog_2378	67.4	2.1e-19	N/A	unknown function
KOfam	UHGV-0017527_26	K01737	103.1	2.9e-30	queD, ptpS, PTS; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase [EC:4.2.3.12 4.1.2.50]	N/A
PHROG	UHGV-0017527_26	phrog_2389	80.1	2.4e-23	QueD-like 6-pyruvoyl-tetrahydropterin synthase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0017527_26	UniRef90_A0A0R3K1T4	100.0	2.2e-24	6-carboxy-5,6,7,8-tetrahydropterin synthase	N/A
eggNOG-mapper	UHGV-0017527_26	857293.CAAU_2026	99.8	7.6e-25	synthase	N/A
Pfam	UHGV-0017527_26	PF01242	N/A	N/A	6-pyruvoyl tetrahydropterin synthase	PTPS
NCBIFam	UHGV-0017527_26	TIGR03367.1	N/A	N/A	6-carboxytetrahydropterin synthase QueD	N/A
COG	UHGV-0017527_26	COG0720	N/A	N/A	6-pyruvoyl-tetrahydropterin synthase	N/A
KOfam	UHGV-0017527_27	K10026	184.2	0	queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]	N/A
PHROG	UHGV-0017527_27	phrog_2076	126.1	2e-37	QueE-like radical SAM domain	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0017527_27	UniRef90_A0A140LAA7	140.0	8.07e-39	7-carboxy-7-deazaguanine synthase	N/A
eggNOG-mapper	UHGV-0017527_27	857293.CAAU_2025	125.0	1.87e-33	Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds	N/A
Pfam	UHGV-0017527_27	PF04055	N/A	N/A	Radical SAM superfamily	Radical_SAM
COG	UHGV-0017527_27	COG0602	N/A	N/A	Organic radical activating enzyme NrdG/QueE	N/A
HAMAP	UHGV-0017527_27	MF_00917	N/A	N/A	7-carboxy-7-deazaguanine synthase [queE]	N/A
structural_annotation	UHGV-0017527_27	PF04055,MF_00917,TIGR04508,COG0602	N/A	N/A	N/A	N/A
KOfam	UHGV-0017527_29	K01495	233.2	0	GCH1, folE; GTP cyclohydrolase IA [EC:3.5.4.16]	N/A
PHROG	UHGV-0017527_29	phrog_2197	212.0	0	GTP cyclohydrolase	other
UniRef90	UHGV-0017527_29	UniRef90_A0A6N7XMK8	178.0	0	GTP cyclohydrolase 1	N/A
eggNOG-mapper	UHGV-0017527_29	1035196.HMPREF9998_01467	172.0	0	GTP cyclohydrolase I	N/A
Pfam	UHGV-0017527_29	PF01227	N/A	N/A	GTP cyclohydrolase I	GTP_cyclohydroI
NCBIFam	UHGV-0017527_29	NF006826.0	N/A	N/A	GTP cyclohydrolase I FolE	N/A
COG	UHGV-0017527_29	COG0302	N/A	N/A	GTP cyclohydrolase I	N/A
structural_annotation	UHGV-0017527_29	PF01227,MF_00223,NF006825,COG0302	N/A	N/A	N/A	N/A
KOfam	UHGV-0017527_30	K06920	227.6	0	queC; 7-cyano-7-deazaguanine synthase [EC:6.3.4.20]	N/A
PHROG	UHGV-0017527_30	phrog_1550	152.2	2.8026e-45	QueC-like queuosine biosynthesis	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0017527_30	UniRef90_A0A7X8MNR1	330.0	0	7-cyano-7-deazaguanine synthase QueC	N/A
eggNOG-mapper	UHGV-0017527_30	857293.CAAU_2027	261.0	0	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))	N/A
PADLOC	UHGV-0017527_30	QueC_00001	62.1	1.4e-24	QueC	CBASS
Pfam	UHGV-0017527_30	PF06508	N/A	N/A	Queuosine biosynthesis protein QueC	QueC
NCBIFam	UHGV-0017527_30	TIGR00364.1	N/A	N/A	7-cyano-7-deazaguanine synthase QueC	N/A
COG	UHGV-0017527_30	COG0603	N/A	N/A	7-cyano-7-deazaguanine synthase (queuosine biosynthesis)	N/A
structural_annotation	UHGV-0017527_30	PF06508,MF_01633,TIGR00364,COG0603	N/A	N/A	N/A	N/A
PHROG	UHGV-0017527_31	phrog_2402	111.2	1e-32	N/A	unknown function
eggNOG-mapper	UHGV-0017527_31	462590.A9J4Z6_BPPYU	72.8	0.00000000000321	N/A	N/A
structural_annotation	UHGV-0017527_31	PF18897	N/A	N/A	N/A	N/A
PHROG	UHGV-0017527_32	phrog_21866	202.3	0	primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017527_32	UniRef90_A0A2D9CBF3	167.0	2.96935e-42	PriCT_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0017527_32	856793.MICA_280	89.0	9.67e-16	Phage plasmid primase P4 family	N/A
PADLOC	UHGV-0017527_32	COG4951	49.2	0.000000000000094	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0017527_32	PF08708	N/A	N/A	Primase C terminal 1 (PriCT-1)	PriCT_1
COG	UHGV-0017527_32	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-0017527_32	PF18662,NF040561,COG4951	N/A	N/A	N/A	N/A
KOfam	UHGV-0017527_33	K03657	117.2	0	uvrD, pcrA; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]	N/A
PHROG	UHGV-0017527_33	phrog_1967	138.9	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017527_33	UniRef90_A0A0F9V6I8	218.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0017527_33	268739.Nmlp_1807	85.5	0.00000000000000661	COG0210 Superfamily I DNA and RNA helicases	N/A
PADLOC	UHGV-0017527_33	drt-cluster22	60.2	7.9e-25	DRT	DRT
Pfam	UHGV-0017527_33	PF00580	N/A	N/A	UvrD/REP helicase N-terminal domain	UvrD-helicase
Pfam	UHGV-0017527_33	PF13361	N/A	N/A	UvrD-like helicase C-terminal domain	UvrD_C
COG	UHGV-0017527_33	COG0210	N/A	N/A	Superfamily I DNA or RNA helicase	N/A
structural_annotation	UHGV-0017527_33	PF00580,PF13087,MF_01920,NF008743,COG0210	N/A	N/A	N/A	N/A
KOfam	UHGV-0017527_34	K02335	275.8	0	polA; DNA polymerase I [EC:2.7.7.7]	N/A
PHROG	UHGV-0017527_34	phrog_17	279.3	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017527_34	UniRef90_A0A6V8EZ13	352.0	0	DNA-directed DNA polymerase (Fragment)	N/A
eggNOG-mapper	UHGV-0017527_34	1538804.A0A088F6T3_9CAUD	291.0	0	DNA polymerase family A	N/A
PADLOC	UHGV-0017527_34	drt-cluster58	72.7	7.2e-21	DRT	DRT
Pfam	UHGV-0017527_34	PF01612	N/A	N/A	3'-5' exonuclease	DNA_pol_A_exo1
Pfam	UHGV-0017527_34	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
structural_annotation	UHGV-0017527_34	PF00476,PF01612,MF_04101,NF004397,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-0017527_35	phrog_229	88.5	8.4e-26	MazG-like pyrophosphatase	other
UniRef90	UHGV-0017527_35	UniRef90_A0A349PIU2	111.0	1.63e-29	MazG domain-containing protein	N/A
eggNOG-mapper	UHGV-0017527_35	1140.Synpcc7942_0099	103.0	4.23e-27	MazG nucleotide pyrophosphohydrolase domain	N/A
Pfam	UHGV-0017527_35	PF03819	N/A	N/A	MazG nucleotide pyrophosphohydrolase domain	MazG
COG	UHGV-0017527_35	COG1694	N/A	N/A	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	N/A
structural_annotation	UHGV-0017527_35	PF12643,MF_01020,NF002747,COG1694	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017527_36	411473.RUMCAL_02525	103.0	1.82e-27	N/A	N/A
KOfam	UHGV-0017527_37	K03111	69.7	7.1e-20	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0017527_37	phrog_44	80.3	3.4e-23	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017527_37	UniRef90_UPI0015D49941	77.0	0.00000000000000251	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0017527_37	362418.IW19_02600	71.2	0.0000000000000405	single-stranded DNA-binding protein	N/A
Pfam	UHGV-0017527_37	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0017527_37	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0017527_37	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0017527_37	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0017527_39	K08728	40.5	0.000000000037	E2.4.2.6; nucleoside deoxyribosyltransferase [EC:2.4.2.6]	N/A
PHROG	UHGV-0017527_39	phrog_7995	51.3	0.000000000000018	nucleoside deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017527_39	UniRef90_A0A7C4D9U5	55.8	0.000000449	TIR domain-containing protein	N/A
eggNOG-mapper	UHGV-0017527_39	1210908.HSB1_14120	59.7	0.00000000265	Nucleoside 2-deoxyribosyltransferase like	N/A
Pfam	UHGV-0017527_39	PF05014	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	Nuc_deoxyrib_tr
COG	UHGV-0017527_39	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0017527_39	PF05014,MF_03036,TIGR03646,COG3613	N/A	N/A	N/A	N/A
KOfam	UHGV-0017527_41	K09700	46.7	0.00000000000063	N/A	N/A
UniRef90	UHGV-0017527_41	UniRef90_F8AEI0	56.2	0.000000011	Rubrerythrin domain-containing protein	N/A
eggNOG-mapper	UHGV-0017527_41	529709.PYCH_09740	56.2	0.00000000185	Rubrerythrin	N/A
COG	UHGV-0017527_41	COG1633	N/A	N/A	Rubrerythrin, includes spore coat protein YhjR	N/A
Pfam	UHGV-0017527_43	PF18998	N/A	N/A	Divergent InlB B-repeat domain	Flg_new_2
PHROG	UHGV-0017527_45	phrog_6	82.2	6.8e-24	baseplate protein	tail
Pfam	UHGV-0017527_45	PF04865	N/A	N/A	Baseplate J-like protein	Baseplate_J
Pfam	UHGV-0017527_51	PF21821	N/A	N/A	Dit-like phage tail protein	Dit_like
structural_annotation	UHGV-0017527_56	PF05619,COG3497	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017527_57	PF20765	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017527_59	PF13262	N/A	N/A	N/A	N/A
UniRef90	UHGV-0017527_61	UniRef90_UPI001651C3B1	310.0	0	N/A	N/A
structural_annotation	UHGV-0017527_61	PF09950,MF_04113,NF041155,COG4834	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017527_62	743719.PaelaDRAFT_3774	87.0	1.87e-16	beta-lactamase	N/A
Pfam	UHGV-0017527_62	PF13290	N/A	N/A	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
COG	UHGV-0017527_62	COG3292	N/A	N/A	Periplasmic ligand-binding sensor domain	N/A
KOfam	UHGV-0017527_63	K09960	115.7	5.4e-34	N/A	N/A
PHROG	UHGV-0017527_63	phrog_12864	92.5	3.1e-27	head maturation protease	head and packaging
eggNOG-mapper	UHGV-0017527_63	1321815.HMPREF9193_01141	62.8	0.0000000706	N/A	N/A
Pfam	UHGV-0017527_63	PF09979	N/A	N/A	N/A	DUF2213
COG	UHGV-0017527_63	COG3566	N/A	N/A	N/A	N/A
KOfam	UHGV-0017527_66	K09961	78.8	5.9e-23	N/A	N/A
PHROG	UHGV-0017527_66	phrog_146	130.3	1.1e-38	portal protein	head and packaging
UniRef90	UHGV-0017527_66	UniRef90_UPI0016524B99	290.0	0	N/A	N/A
Pfam	UHGV-0017527_66	PF06381	N/A	N/A	Anti-CBASS protein Acb1-like	Abc1-like
structural_annotation	UHGV-0017527_66	PF06381,MF_04135,TIGR01555,COG3567	N/A	N/A	N/A	N/A
Pfam	UHGV-0017527_68	PF13529	N/A	N/A	Peptidase_C39 like family	Peptidase_C39_2
COG	UHGV-0017527_68	COG4990	N/A	N/A	Predicted cysteine peptidase, C39 family	N/A
Pfam	UHGV-0017527_69	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
KOfam	UHGV-0017527_70	K06909	62.2	7.8e-18	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0017527_70	phrog_2	101.9	1e-29	terminase large subunit	head and packaging
UniRef90	UHGV-0017527_70	UniRef90_G4W952	276.0	0	Large terminase	N/A
eggNOG-mapper	UHGV-0017527_70	981335.G4W952_9CAUD	276.0	0	Terminase-like family	N/A
Pfam	UHGV-0017527_70	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
structural_annotation	UHGV-0017527_70	PF03237,PF17289,MF_04148,TIGR01547,COG5323	N/A	N/A	N/A	N/A
KOfam	UHGV-0017527_72	K17250	60.1	2.9e-17	pglI; GalNAc5-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase [EC:2.4.1.293]	N/A
PHROG	UHGV-0017527_72	phrog_1802	42.2	0.0000000000053	radical SAM domain-containing protein	other
UniRef90	UHGV-0017527_72	UniRef90_A0A5Q2S2S6	62.4	0.00000122	Glycosyltransferase family 2 protein	N/A
eggNOG-mapper	UHGV-0017527_72	585203.SMSK564_1801	63.9	0.0000001	Glycosyltransferase like family 2	N/A
Pfam	UHGV-0017527_72	PF00535	N/A	N/A	Glycosyl transferase family 2	Glycos_transf_2
COG	UHGV-0017527_72	COG1216	N/A	N/A	Glycosyltransferase, GT2 family	N/A
PHROG	UHGV-0017527_75	phrog_2643	42.1	0.0000000000046	5'-3' deoxyribonucleotidase	moron, auxiliary metabolic gene and host takeover
structural_annotation	UHGV-0017527_75	PF11019,MF_01022,NF003937,COG4502	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017527_76	318464.IO99_07375	55.8	0.0000000195	N/A	N/A

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0017527	Yes	53,362	36	99	1