Viral OTU vOTU-070116

vOTU: vOTU-070116

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-070116
Number of Genomes	1
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-05897 → vGENUS-13825 → vSUBGEN-22573 → vOTU-070116
Host Lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → CAG-353 → CAG-353 sp900066885
Viral Lifestyle	temperate

Representative Genome
Genome ID	UHGV-1378400
Biosample ID	N/A
Length	39,478 bps
CheckV Completeness	96.40% (High-quality)
CDS Count	64
CDS Density	94.80%
tRNA Count	1
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 96.4)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1378400_1	phrog_119	64.0	2e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1378400_1	UniRef90_UPI00164403F9	120.0	4.26e-33	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1378400_1	768710.DesyoDRAFT_1275	109.0	2.57e-29	HNH nucleases	N/A
Pfam	UHGV-1378400_1	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1378400_1	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1378400_2	phrog_36	64.3	2.2e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1378400_2	UniRef90_UPI0005D1DECF	65.9	0.0000000000522	N/A	N/A
eggNOG-mapper	UHGV-1378400_2	1278311.AUAL01000001_gene42	52.4	0.00000125	sigma factor activity	N/A
Pfam	UHGV-1378400_2	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
COG	UHGV-1378400_2	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1378400_2	PF04545,TIGR02984	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1378400_7	PF09038	N/A	N/A	N/A	N/A
Pfam	UHGV-1378400_8	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-1378400_10	PF05766	N/A	N/A	N/A	N/A
PHROG	UHGV-1378400_13	phrog_8684	63.5	2e-18	N/A	unknown function
UniRef90	UHGV-1378400_13	UniRef90_A0A412ULY6	136.0	1.79e-38	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1378400_13	742767.HMPREF9456_03352	60.1	0.00000000174	YopX protein	N/A
Pfam	UHGV-1378400_13	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-1378400_13	PF09643,TIGR01671	N/A	N/A	N/A	N/A
KOfam	UHGV-1378400_16	K17680	286.8	0	PEO1; twinkle protein [EC:5.6.2.3]	N/A
PHROG	UHGV-1378400_16	phrog_239	269.6	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1378400_16	UniRef90_A0A373XRB8	711.0	0	SF4 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-1378400_16	397290.C810_01519	534.0	0	N/A	N/A
Pfam	UHGV-1378400_16	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-1378400_16	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1378400_16	PF03796,PF19898,MF_04154,TIGR03877,TIGR01391,COG0467,COG0358	N/A	N/A	N/A	N/A
PHROG	UHGV-1378400_17	phrog_2514	80.7	1.5e-23	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1378400_17	1120998.AUFC01000013_gene2941	126.0	5.17e-34	N/A	N/A
structural_annotation	UHGV-1378400_17	PF10771,MF_01177,TIGR01714,COG5529	N/A	N/A	N/A	N/A
PHROG	UHGV-1378400_18	phrog_3490	160.5	0	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1378400_18	UniRef90_R6T0H0	157.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1378400_18	397291.C804_06336	132.0	7.9e-37	ERCC4 domain	N/A
Pfam	UHGV-1378400_18	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-1378400_18	PF02732,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-1378400_19	phrog_18107	85.7	6.4e-25	N/A	unknown function
UniRef90	UHGV-1378400_19	UniRef90_UPI00058F46CC	89.7	7.8e-19	N/A	N/A
eggNOG-mapper	UHGV-1378400_19	476272.RUMHYD_02831	175.0	0	N/A	N/A
structural_annotation	UHGV-1378400_19	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-1378400_20	phrog_2872	234.0	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1378400_20	UniRef90_A0A8J6P193	291.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1378400_20	1449050.JNLE01000005_gene3946	209.0	0	AAA domain	N/A
Pfam	UHGV-1378400_20	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1378400_20	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
Pfam	UHGV-1378400_21	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
KOfam	UHGV-1378400_25	K24451	117.9	7.4e-35	zim; modification methylase	N/A
PHROG	UHGV-1378400_25	phrog_67	114.5	5.6e-34	DNA methyltransferase	other
UniRef90	UHGV-1378400_25	UniRef90_A0A374BT14	519.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1378400_25	411473.RUMCAL_00273	504.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-1378400_25	MTase_II_00139	106.8	3.9e-31	Type II methyltransferase	RM
Pfam	UHGV-1378400_25	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1378400_25	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1378400_25	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-1378400_26	K14440	57.6	3.4e-22	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-1378400_26	phrog_16	210.0	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1378400_26	UniRef90_A0A415HVL0	646.0	0	Helicase	N/A
eggNOG-mapper	UHGV-1378400_26	411473.RUMCAL_00274	613.0	0	DEAD-like helicases superfamily	N/A
Pfam	UHGV-1378400_26	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1378400_26	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1378400_26	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1378400_26	PF18766,PF16203,MF_01821,TIGR04095,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-1378400_27	phrog_424	80.2	2.4e-23	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-1378400_27	693746.OBV_43240	483.0	0	N/A	N/A
COG	UHGV-1378400_27	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1378400_27	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
UniRef90	UHGV-1378400_32	UniRef90_A0A521J2P3	93.2	1.7e-23	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1378400_32	1121423.JONT01000002_gene2373	85.5	7.2e-21	N/A	N/A
Pfam	UHGV-1378400_32	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1378400_32	PF05339,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1378400_33	K01356	123.3	3e-36	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1378400_33	phrog_4	152.4	2.8026e-45	transcriptional repressor	transcription regulation
UniRef90	UHGV-1378400_33	UniRef90_A0A2V2FXZ1	219.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1378400_33	246199.CUS_5911	199.0	0	N/A	N/A
Pfam	UHGV-1378400_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1378400_33	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1378400_33	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1378400_33	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
KOfam	UHGV-1378400_34	K15051	308.3	0	endA; DNA-entry nuclease	N/A
PHROG	UHGV-1378400_34	phrog_36807	143.0	2.10055e-42	N/A	unknown function
UniRef90	UHGV-1378400_34	UniRef90_A0A1C6ELK8	372.0	0	Competence-specific nuclease	N/A
eggNOG-mapper	UHGV-1378400_34	552398.HMPREF0866_02158	321.0	0	NOG18738 non supervised orthologous group	N/A
Pfam	UHGV-1378400_34	PF13930	N/A	N/A	DNA/RNA non-specific endonuclease	Endonuclea_NS_2
Pfam	UHGV-1378400_34	PF00404	N/A	N/A	Dockerin type I domain	Dockerin_1
COG	UHGV-1378400_34	COG2169	N/A	N/A	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	N/A
structural_annotation	UHGV-1378400_34	PF13930,COG1864	N/A	N/A	N/A	N/A
KOfam	UHGV-1378400_35	K14059	232.8	0	int; integrase	N/A
PHROG	UHGV-1378400_35	phrog_1	206.6	0	integrase	integration and excision
UniRef90	UHGV-1378400_35	UniRef90_A0A7X9GK55	391.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1378400_35	1203606.HMPREF1526_02099	190.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1378400_35	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1378400_35	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1378400_35	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1378400_35	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1378400_36	UniRef90_R6DRH1	152.0	1.54143e-44	Putative TnpX site-specific recombinase	N/A
eggNOG-mapper	UHGV-1378400_36	742738.HMPREF9460_00886	98.6	2.04e-24	N/A	N/A
Pfam	UHGV-1378400_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
PHROG	UHGV-1378400_40	phrog_37604	165.7	0	N/A	unknown function
eggNOG-mapper	UHGV-1378400_40	457412.RSAG_01109	136.0	2.94e-39	N/A	N/A
KOfam	UHGV-1378400_41	K01447	99.0	6.5e-29	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1378400_41	phrog_1794	118.1	9.1e-35	amidase	lysis
UniRef90	UHGV-1378400_41	UniRef90_A0A1C6CHS3	451.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1378400_41	411473.RUMCAL_00096	215.0	0	Ami_2	N/A
Pfam	UHGV-1378400_41	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1378400_41	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-1378400_41	PF01510,PF18342,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
KOfam	UHGV-1378400_43	K23533	41.5	0.0000000000054	LINGO, LRRN6; leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein	N/A
PHROG	UHGV-1378400_43	phrog_18805	100.2	0	N/A	unknown function
Pfam	UHGV-1378400_43	PF13855	N/A	N/A	Leucine rich repeat	LRR_8
Pfam	UHGV-1378400_43	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
NCBIFam	UHGV-1378400_43	TIGR02167.1	N/A	N/A	bacterial surface protein 26-residue repeat	N/A
structural_annotation	UHGV-1378400_43	PF13306,NF041351	N/A	N/A	N/A	N/A
PHROG	UHGV-1378400_44	phrog_21765	47.1	0.00000000000026	N/A	unknown function
eggNOG-mapper	UHGV-1378400_44	1235793.C809_01950	68.6	0.0000000000018	Phage tail-collar fibre protein	N/A
COG	UHGV-1378400_44	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
COG	UHGV-1378400_45	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-1378400_49	phrog_8309	46.3	1.6e-16	N/A	unknown function
COG	UHGV-1378400_49	COG2911	N/A	N/A	Autotransporter translocation and assembly protein TamB	N/A
PHROG	UHGV-1378400_50	phrog_34633	62.3	9.3e-18	N/A	unknown function
eggNOG-mapper	UHGV-1378400_50	33035.JPJF01000033_gene2262	60.1	0.00000000305	N/A	N/A
PHROG	UHGV-1378400_51	phrog_1067	223.6	0	minor head protein	head and packaging
UniRef90	UHGV-1378400_51	UniRef90_UPI0011C788B1	267.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1378400_51	1567011.A0A0A7RUI9_9VIRU	156.0	1.68e-38	N-acetylmuramoyl-L-alanine amidase activity	N/A
Pfam	UHGV-1378400_51	PF18994	N/A	N/A	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
Pfam	UHGV-1378400_51	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1378400_51	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-1378400_51	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1378400_52	phrog_33	66.3	5.5e-19	distal tail protein Dit	tail
UniRef90	UHGV-1378400_52	UniRef90_A0A096DPC2	75.5	0.00000000000169	Tail protein	N/A
eggNOG-mapper	UHGV-1378400_52	994573.T472_0211980	71.2	0.00000000000835	tail component	N/A
COG	UHGV-1378400_52	COG4722	N/A	N/A	Phage-related protein YomH	N/A
KOfam	UHGV-1378400_53	K05636	50.1	0.000000000000012	LAMB1; laminin, beta 1	N/A
PHROG	UHGV-1378400_53	phrog_19074	486.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1378400_53	1203606.HMPREF1526_01348	358.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-1378400_53	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1378400_53	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1378400_53	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1378400_54	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1378400_55	phrog_88	85.5	4.8e-25	major tail protein	tail
UniRef90	UHGV-1378400_55	UniRef90_A4J7Q7	162.0	2.8026e-45	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1378400_55	349161.Dred_2600	162.0	0	N/A	N/A
UniRef90	UHGV-1378400_56	UniRef90_A4J7Q8	90.5	1.38e-20	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-1378400_56	349161.Dred_2601	90.5	2.32e-21	Phage protein, HK97 gp10 family	N/A
structural_annotation	UHGV-1378400_56	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1378400_57	999413.HMPREF1094_02005	70.1	0.0000000000000309	N/A	N/A
structural_annotation	UHGV-1378400_57	PF05657,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-1378400_58	phrog_19734	107.8	7e-32	N/A	unknown function
UniRef90	UHGV-1378400_58	UniRef90_A0A3E5GR03	79.7	5.48e-17	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-1378400_58	349161.Dred_2602	104.0	2.16e-27	N/A	N/A
structural_annotation	UHGV-1378400_58	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1378400_59	phrog_749	67.6	1.5e-19	N/A	unknown function
UniRef90	UHGV-1378400_59	UniRef90_W7B6R4	77.4	1.61e-16	Gp6 protein	N/A
eggNOG-mapper	UHGV-1378400_59	1027396.LMOSA_21430	70.1	0.000000000000017	N/A	N/A
PHROG	UHGV-1378400_60	phrog_10	124.3	1e-36	major head protein	head and packaging
UniRef90	UHGV-1378400_60	UniRef90_A0A498CNG4	380.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1378400_60	1211817.CCAT010000053_gene2132	360.0	0	Phage capsid family	N/A
Pfam	UHGV-1378400_60	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1378400_60	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1378400_60	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1378400_60	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1378400_61	K01358	130.0	2.4e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1378400_61	phrog_94	245.6	0	head maturation protease	head and packaging
UniRef90	UHGV-1378400_61	UniRef90_A0A645D6Q9	236.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1378400_61	349161.Dred_2605	226.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1378400_61	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1378400_61	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1378400_61	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1378400_62	phrog_12	129.0	2.9e-38	portal protein	head and packaging
UniRef90	UHGV-1378400_62	UniRef90_A0A4U7J9G4	337.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1378400_62	86416.Clopa_0339	317.0	0	Phage portal protein	N/A
Pfam	UHGV-1378400_62	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1378400_62	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1378400_62	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1378400_62	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1378400_63	phrog_9	257.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-1378400_63	UniRef90_A0A318XNK0	686.0	0	Phage terminase large subunit-like protein	N/A
eggNOG-mapper	UHGV-1378400_63	1211817.CCAT010000053_gene2129	641.0	0	Phage Terminase	N/A
Pfam	UHGV-1378400_63	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1378400_63	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1378400_63	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1378400_64	phrog_5110	115.8	1.4e-34	terminase small subunit	head and packaging
UniRef90	UHGV-1378400_64	UniRef90_UPI000A26C9C4	110.0	5.85e-29	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-1378400_64	665956.HMPREF1032_00124	58.2	0.00000000188	N/A	N/A
structural_annotation	UHGV-1378400_64	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1378400	Yes	39,478	42	96	1