Viral OTU vOTU-088013

vOTU: vOTU-088013

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-088013
Number of Genomes	1
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00026 → vSUBFAM-02578 → vOTU-088013
Host Lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → CAG-272 → Flemingibacterium
Viral Lifestyle	temperate

Representative Genome
Genome ID	UHGV-0024197
Biosample ID	SAMEA4766394
Length	19,105 bps
CheckV Completeness	54.15% (Medium-quality)
CDS Count	29
CDS Density	91.50%
tRNA Count	0
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 54.15)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0024197_3	K07729	46.4	0.00000000000083	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0024197_3	phrog_3	43.8	0.0000000000097	transcriptional repressor	transcription regulation
UniRef90	UHGV-0024197_3	UniRef90_A0A480BDV6	65.1	0.00000000000191	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0024197_3	1121033.AUCF01000003_gene3213	51.2	0.00000134	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0024197_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0024197_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0024197_3	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0024197_4	K22299	69.8	5e-20	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0024197_4	phrog_8	64.1	2.5e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0024197_4	UniRef90_UPI0015F5A3AD	132.0	1.47e-36	transcriptional regulator	N/A
eggNOG-mapper	UHGV-0024197_4	1405.DJ92_884	120.0	1.4e-32	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0024197_4	retron_type_VI_hth_cluster2_1	47.9	0.00000000000021	N/A	Retron
Pfam	UHGV-0024197_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0024197_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0024197_4	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0024197_5	phrog_87	87.9	7.8e-26	metallo-protease	other
UniRef90	UHGV-0024197_5	UniRef90_UPI00195F0689	131.0	1.65e-36	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0024197_5	420246.GTNG_2861	117.0	6.61e-32	N/A	N/A
Pfam	UHGV-0024197_5	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0024197_5	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0024197_5	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0024197_6	K02342	170.8	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0024197_6	phrog_192	147.2	5.46506e-44	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0024197_6	UniRef90_A0A3R6I8H2	177.0	0	Exonuclease	N/A
eggNOG-mapper	UHGV-0024197_6	435830.HMPREF0045_01627	141.0	4.34e-35	EXOIII	N/A
PADLOC	UHGV-0024197_6	cd06127	127.9	7.2e-38	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0024197_6	PF00929	N/A	N/A	Exonuclease	RNase_T
Pfam	UHGV-0024197_6	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
NCBIFam	UHGV-0024197_6	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-0024197_6	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
PHROG	UHGV-0024197_7	phrog_2695	455.1	0	N/A	unknown function
UniRef90	UHGV-0024197_7	UniRef90_A0A1Q6PX50	549.0	0	SIR2_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0024197_7	457398.HMPREF0326_03187	499.0	0	SIR2-like domain	N/A
PADLOC	UHGV-0024197_7	Sirtuin_Blast2	337.4	0	N/A	N/A
Pfam	UHGV-0024197_7	PF13289	N/A	N/A	SIR2-like domain	SIR2_2
COG	UHGV-0024197_7	COG0846	N/A	N/A	NAD-dependent protein deacetylase, SIR2 family	N/A
KOfam	UHGV-0024197_8	K14059	225.0	0	int; integrase	N/A
PHROG	UHGV-0024197_8	phrog_1	202.7	0	integrase	integration and excision
UniRef90	UHGV-0024197_8	UniRef90_UPI0008345DF0	380.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0024197_8	1507.HMPREF0262_00307	215.0	0	Phage integrase family	N/A
Pfam	UHGV-0024197_8	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0024197_8	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0024197_8	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0024197_8	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0024197_11	phrog_15303	53.8	0.0000000000000029	N/A	unknown function
KOfam	UHGV-0024197_12	K07273	158.8	0	acm; lysozyme	N/A
PHROG	UHGV-0024197_12	phrog_291	125.7	4.4e-37	endolysin	lysis
UniRef90	UHGV-0024197_12	UniRef90_UPI00145A9D9C	123.0	5.32e-30	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0024197_12	537007.BLAHAN_06873	101.0	8.79e-22	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0024197_12	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0024197_12	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0024197_12	PF01183,TIGR00612,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0024197_15	phrog_18593	40.9	0.000000000028	N/A	unknown function
UniRef90	UHGV-0024197_15	UniRef90_R6I1X1	110.0	1.48e-28	COPII coat assembly protein SEC16 (Protein transport protein SEC16)	N/A
eggNOG-mapper	UHGV-0024197_15	1232449.BAHV02000010_gene2734	72.4	0.0000000000000427	N/A	N/A
PHROG	UHGV-0024197_17	phrog_863	50.6	0.000000000000044	tail fiber assembly	tail
structural_annotation	UHGV-0024197_17	PF21722	N/A	N/A	N/A	N/A
PHROG	UHGV-0024197_19	phrog_521	104.1	1.2e-30	tail protein	tail
UniRef90	UHGV-0024197_19	UniRef90_UPI00067EC1AF	123.0	2.68e-32	N/A	N/A
eggNOG-mapper	UHGV-0024197_19	1007096.BAGW01000036_gene2669	115.0	5.93e-30	N/A	N/A
Pfam	UHGV-0024197_19	PF10076	N/A	N/A	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
COG	UHGV-0024197_19	COG3778	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024197_19	PF10076,TIGR02242,COG3778	N/A	N/A	N/A	N/A
PHROG	UHGV-0024197_20	phrog_6	241.9	0	baseplate protein	tail
UniRef90	UHGV-0024197_20	UniRef90_A0A1V5X8C8	267.0	0	Baseplate J-like protein	N/A
eggNOG-mapper	UHGV-0024197_20	1449126.JQKL01000051_gene3155	251.0	0	Baseplate J-like protein	N/A
Pfam	UHGV-0024197_20	PF04865	N/A	N/A	Baseplate J-like protein	Baseplate_J
COG	UHGV-0024197_20	COG3299	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0024197_20	PF04865,PF21379,MF_04102,TIGR02243,COG3299	N/A	N/A	N/A	N/A
Pfam	UHGV-0024197_21	PF10934	N/A	N/A	N/A	DUF2634
Pfam	UHGV-0024197_22	PF10844	N/A	N/A	N/A	DUF2577
structural_annotation	UHGV-0024197_22	PF10844,MF_00075,TIGR00008,COG0361	N/A	N/A	N/A	N/A
KOfam	UHGV-0024197_23	K19304	123.8	1.6e-36	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0024197_23	phrog_400	142.5	3.39955e-42	tail protein	tail
UniRef90	UHGV-0024197_23	UniRef90_UPI00135753D0	99.0	4.15e-19	M23 family metallopeptidase	N/A
eggNOG-mapper	UHGV-0024197_23	1122918.KB907247_gene4918	109.0	1.03e-23	Membrane proteins related to metalloendopeptidases	N/A
Pfam	UHGV-0024197_23	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0024197_23	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
PHROG	UHGV-0024197_24	phrog_380	72.2	7.7e-21	endolysin	lysis
UniRef90	UHGV-0024197_24	UniRef90_G9WTM3	58.5	0.0000000922	LysM domain-containing protein	N/A
eggNOG-mapper	UHGV-0024197_24	12402.Q708L6_9CAUD	73.2	0.0000000000000637	lytic transglycosylase activity	N/A
structural_annotation	UHGV-0024197_24	PF19266,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0024197_25	phrog_973	54.8	0.0000000000000012	tail length tape measure protein	tail
UniRef90	UHGV-0024197_25	UniRef90_UPI00096FCEA0	138.0	2.57e-31	tape measure protein	N/A
eggNOG-mapper	UHGV-0024197_25	632245.CLP_2908	241.0	0	phage tail tape measure protein	N/A
COG	UHGV-0024197_25	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0024197_25	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0024197_27	phrog_4976	59.0	9.2e-17	tail assembly chaperone	tail
eggNOG-mapper	UHGV-0024197_27	318464.IO99_13715	65.9	0.00000000000492	N/A	N/A
structural_annotation	UHGV-0024197_27	PF08890,TIGR01674	N/A	N/A	N/A	N/A
PHROG	UHGV-0024197_28	phrog_365	97.3	1.2e-28	tail protein	tail
UniRef90	UHGV-0024197_28	UniRef90_UPI0008299DE3	133.0	2.06e-37	phage tail tube protein	N/A
eggNOG-mapper	UHGV-0024197_28	290402.Cbei_0915	136.0	2.11e-39	Phage tail tube protein	N/A
Pfam	UHGV-0024197_28	PF09393	N/A	N/A	Phage tail tube protein	DUF2001
PHROG	UHGV-0024197_29	phrog_1480	248.6	0	tail sheath	tail
UniRef90	UHGV-0024197_29	UniRef90_UPI001C020588	322.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0024197_29	290402.Cbei_0914	312.0	0	Phage tail sheath C-terminal domain	N/A
Pfam	UHGV-0024197_29	PF17482	N/A	N/A	Phage tail sheath C-terminal domain	Phage_sheath_1C
structural_annotation	UHGV-0024197_29	PF10758,COG3497	N/A	N/A	N/A	N/A

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0024197	Yes	19,105	52	54	1