Viral OTU vOTU-099405

vOTU: vOTU-099405

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-099405
Number of Genomes	1
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00007 → vSUBFAM-00318 → vOTU-099405
Host Lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae
Viral Lifestyle	lytic

Representative Genome
Genome ID	UHGV-0016900
Biosample ID	SAMEA4765562
Length	49,500 bps
CheckV Completeness	85.22% (Medium-quality)
CDS Count	75
CDS Density	87.52%
tRNA Count	3
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 85.22)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0016900_1	K06168	557.7	0	miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]	N/A
UniRef90	UHGV-0016900_1	UniRef90_R6NZI9	781.0	0	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase	N/A
eggNOG-mapper	UHGV-0016900_1	471875.RUMLAC_02115	705.0	0	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	N/A
Pfam	UHGV-0016900_1	PF00919	N/A	N/A	N/A	UPF0004
Pfam	UHGV-0016900_1	PF04055	N/A	N/A	Radical SAM superfamily	Radical_SAM
NCBIFam	UHGV-0016900_1	TIGR01574.1	N/A	N/A	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	N/A
COG	UHGV-0016900_1	COG0621	N/A	N/A	tRNA A37 methylthiotransferase MiaB	N/A
HAMAP	UHGV-0016900_1	MF_01864	N/A	N/A	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]	N/A
structural_annotation	UHGV-0016900_1	PF00919,PF20903,MF_01864,TIGR01574,COG0621	N/A	N/A	N/A	N/A
KOfam	UHGV-0016900_2	K07273	182.0	0	acm; lysozyme	N/A
PHROG	UHGV-0016900_2	phrog_291	143.2	1.99965e-42	endolysin	lysis
UniRef90	UHGV-0016900_2	UniRef90_D4M5A7	662.0	0	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
eggNOG-mapper	UHGV-0016900_2	515620.EUBELI_01316	197.0	0	Glycoside Hydrolase Family 25-like lysozyme endolysin	N/A
Pfam	UHGV-0016900_2	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0016900_2	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0016900_2	PF01183,NF003627,COG3757,COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016900_3	PF13384,NF001074,COG3677	N/A	N/A	N/A	N/A
PHROG	UHGV-0016900_4	phrog_1129	83.1	1.7e-24	holin	lysis
UniRef90	UHGV-0016900_4	UniRef90_UPI00051B7422	145.0	1.77965e-43	phage holin family protein	N/A
eggNOG-mapper	UHGV-0016900_4	411460.RUMTOR_01325	144.0	1.20512e-43	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0016900_4	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0016900_4	PF16079	N/A	N/A	N/A	N/A
PHROG	UHGV-0016900_5	phrog_937	77.7	1.4e-22	hemolysin	other
eggNOG-mapper	UHGV-0016900_5	411459.RUMOBE_01081	105.0	7.51e-28	N/A	N/A
NCBIFam	UHGV-0016900_6	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0016900_6	NF040910	N/A	N/A	N/A	N/A
UniRef90	UHGV-0016900_8	UniRef90_UPI000E40D12B	500.0	0	InlB B-repeat-containing protein	N/A
eggNOG-mapper	UHGV-0016900_8	1410626.JHXB01000004_gene213	134.0	3.82e-30	N/A	N/A
Pfam	UHGV-0016900_8	PF09479	N/A	N/A	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
NCBIFam	UHGV-0016900_8	TIGR02543.1	N/A	N/A	TIGR02543 family repeat protein	N/A
COG	UHGV-0016900_8	COG1579	N/A	N/A	Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain	N/A
structural_annotation	UHGV-0016900_8	PF16893,NF033814	N/A	N/A	N/A	N/A
PHROG	UHGV-0016900_9	phrog_6616	584.0	0	tail protein	tail
UniRef90	UHGV-0016900_9	UniRef90_A0A1C5RZB4	479.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0016900_9	476272.RUMHYD_01992	357.0	0	N/A	N/A
structural_annotation	UHGV-0016900_9	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0016900_10	phrog_1194	107.4	7.4e-32	N/A	unknown function
eggNOG-mapper	UHGV-0016900_10	60520.HR47_13415	72.0	0.0000000000000142	N/A	N/A
Pfam	UHGV-0016900_10	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0016900_10	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0016900_11	phrog_167	356.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0016900_11	UniRef90_A0A396PS29	1725.0	0	SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-0016900_11	397290.C810_01419	331.0	0	Transglycosylase SLT domain	N/A
Pfam	UHGV-0016900_11	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
COG	UHGV-0016900_11	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0016900_14	phrog_158	52.8	0.0000000000000069	major tail protein	tail
UniRef90	UHGV-0016900_14	UniRef90_A0A415D4T9	220.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0016900_14	1232453.BAIF02000058_gene1634	142.0	1.43003e-41	N/A	N/A
Pfam	UHGV-0016900_14	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0016900_14	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016900_15	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0016900_16	phrog_5	42.5	0.000000000013	tail completion or Neck1 protein	connector
UniRef90	UHGV-0016900_16	UniRef90_UPI001BBD4500	206.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0016900_16	397290.C810_01411	121.0	1.67e-32	N/A	N/A
AcrCatalog	UHGV-0016900_16	cluster_24841	76.6	1.13e-19	NA	N/A
structural_annotation	UHGV-0016900_16	PF17395,TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0016900_17	1232453.BAIF02000058_gene1630	100.0	2.52e-25	N/A	N/A
eggNOG-mapper	UHGV-0016900_18	397290.C810_01402	96.3	2.16e-24	N/A	N/A
Pfam	UHGV-0016900_18	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
PHROG	UHGV-0016900_20	phrog_422	212.9	0	major head protein	head and packaging
UniRef90	UHGV-0016900_20	UniRef90_A0A396PR42	485.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0016900_20	764291.STRUR_2102	291.0	0	N/A	N/A
Pfam	UHGV-0016900_20	PF19821	N/A	N/A	Phage capsid protein	Phage_capsid_2
structural_annotation	UHGV-0016900_20	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016900_21	PF14265,NF038403	N/A	N/A	N/A	N/A
PHROG	UHGV-0016900_22	phrog_2468	59.2	4.7e-17	head morphogenesis	head and packaging
UniRef90	UHGV-0016900_22	UniRef90_A0A396PS39	376.0	0	Phage_Mu_F domain-containing protein	N/A
Pfam	UHGV-0016900_22	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0016900_22	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016900_22	PF04233,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0016900_23	phrog_64	155.3	0	portal protein	head and packaging
UniRef90	UHGV-0016900_23	UniRef90_A0A396PR41	921.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0016900_23	476272.RUMHYD_01943	328.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0016900_23	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0016900_23	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
UniRef90	UHGV-0016900_24	UniRef90_A0A893WAZ5	202.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0016900_24	1232453.BAIF02000058_gene1624	123.0	3.79e-34	N/A	N/A
structural_annotation	UHGV-0016900_24	PF04545,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0016900_25	phrog_38	153.4	1.4013e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0016900_25	UniRef90_A0A415D4U9	919.0	0	DOD-type homing endonuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-0016900_25	1298920.KI911353_gene2682	749.0	0	TIGRFAM Phage	N/A
COG	UHGV-0016900_25	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016900_25	PF17289,PF04466,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
UniRef90	UHGV-0016900_26	UniRef90_A0A3E3JYB1	96.3	3.06e-25	Conjugal transfer protein	N/A
Pfam	UHGV-0016900_26	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-0016900_26	PF14205	N/A	N/A	N/A	N/A
PHROG	UHGV-0016900_27	phrog_3886	269.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0016900_27	742740.HMPREF9474_02292	266.0	0	N/A	N/A
KOfam	UHGV-0016900_28	K03744	159.9	0	lemA; LemA protein	N/A
PHROG	UHGV-0016900_28	phrog_1383	164.7	0	virion structural protein	head and packaging
UniRef90	UHGV-0016900_28	UniRef90_A0A893W810	335.0	0	LemA family protein	N/A
eggNOG-mapper	UHGV-0016900_28	742735.HMPREF9467_00879	281.0	0	LemA family	N/A
Pfam	UHGV-0016900_28	PF04011	N/A	N/A	LemA family	LemA
COG	UHGV-0016900_28	COG1704	N/A	N/A	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	N/A
structural_annotation	UHGV-0016900_28	PF04011,NF040966,COG1704	N/A	N/A	N/A	N/A
PHROG	UHGV-0016900_29	phrog_2428	95.5	3.5e-28	N/A	unknown function
UniRef90	UHGV-0016900_29	UniRef90_A0A396QA65	248.0	0	ABC transporter ATPase	N/A
eggNOG-mapper	UHGV-0016900_29	632245.CLP_1645	191.0	0	N/A	N/A
dbAPIS	UHGV-0016900_29	APIS024	N/A	N/A	Tad1 proteins are not an enzymes, but are 'sponges' that bind and sequester the immune signaling molecule (cyclic ADP-ribose or gcADPR) produced by TIR-domain proteins, thus decoupling phage sensing from immune effector activation and rendering Thoeris inactive.	N/A
PHROG	UHGV-0016900_30	phrog_1048	163.2	0	N/A	unknown function
UniRef90	UHGV-0016900_30	UniRef90_A0A395V4Z5	277.0	0	N/A	N/A
eggNOG-mapper	UHGV-0016900_30	457412.RSAG_01107	264.0	0	N/A	N/A
Pfam	UHGV-0016900_30	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0016900_30	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0016900_30	PF11195	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016900_34	PF06004,NF033216,COG4568	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0016900_36	PF13069	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0016900_37	476272.RUMHYD_01907	99.4	3.4e-23	N/A	N/A
eggNOG-mapper	UHGV-0016900_38	1235799.C818_04245	66.2	0.0000000000000274	N/A	N/A
UniRef90	UHGV-0016900_39	UniRef90_A0A396PTM6	129.0	5.11e-38	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0016900_39	411490.ANACAC_00697	95.5	1.67e-24	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0016900_39	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0016900_39	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0016900_43	397290.C810_01347	48.1	0.00000112	N/A	N/A
structural_annotation	UHGV-0016900_43	PF18267	N/A	N/A	N/A	N/A
KOfam	UHGV-0016900_47	K07496	327.3	0	K07496; putative transposase	N/A
PHROG	UHGV-0016900_47	phrog_506	338.5	0	transposase	integration and excision
UniRef90	UHGV-0016900_47	UniRef90_UPI0011075589	462.0	0	RNA-guided endonuclease TnpB family protein	N/A
eggNOG-mapper	UHGV-0016900_47	768710.DesyoDRAFT_3266	311.0	0	TIGRFAM transposase, IS605 OrfB family	N/A
PADLOC	UHGV-0016900_47	V_U4	189.6	0	CAS-V-F; effector__SPE	CRISPR-CAS
Pfam	UHGV-0016900_47	PF12323	N/A	N/A	Helix-turn-helix domain	HTH_OrfB_IS605
Pfam	UHGV-0016900_47	PF01385	N/A	N/A	Probable transposase	OrfB_IS605
Pfam	UHGV-0016900_47	PF07282	N/A	N/A	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
NCBIFam	UHGV-0016900_47	NF040570.1	N/A	N/A	RNA-guided endonuclease TnpB family protein	N/A
COG	UHGV-0016900_47	COG0675	N/A	N/A	Transposase	N/A
structural_annotation	UHGV-0016900_47	PF07282,PF01385,NF038281,COG0675	N/A	N/A	N/A	N/A
KOfam	UHGV-0016900_48	K01520	64.8	1.3e-18	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0016900_48	phrog_135	77.5	1.7e-22	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016900_48	UniRef90_A0A2P8EJ97	178.0	0	dUTP pyrophosphatase	N/A
eggNOG-mapper	UHGV-0016900_48	1121296.JONJ01000003_gene774	175.0	0	dUTPase	N/A
Pfam	UHGV-0016900_48	PF00692	N/A	N/A	dUTPase	dUTPase
COG	UHGV-0016900_48	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0016900_48	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-0016900_51	phrog_8684	83.6	2.6e-25	N/A	unknown function
UniRef90	UHGV-0016900_51	UniRef90_A0A373MXN9	314.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0016900_51	457412.RSAG_01162	166.0	0	YopX protein	N/A
Pfam	UHGV-0016900_51	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-0016900_51	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0016900_52	phrog_22292	101.6	2.8e-30	N/A	unknown function
PHROG	UHGV-0016900_53	phrog_924	45.3	0.0000000000015	N/A	unknown function
UniRef90	UHGV-0016900_53	UniRef90_A0A373MXP0	232.0	0	N/A	N/A
eggNOG-mapper	UHGV-0016900_53	411462.DORLON_00804	49.7	0.00000407	N/A	N/A
Pfam	UHGV-0016900_53	PF04448	N/A	N/A	N/A	DUF551
eggNOG-mapper	UHGV-0016900_54	887325.HMPREF0381_0090	94.7	3.47e-24	N/A	N/A
PHROG	UHGV-0016900_55	phrog_26445	98.0	5.7e-29	N/A	unknown function
UniRef90	UHGV-0016900_55	UniRef90_UPI001EDD5E1E	148.0	2.94273e-44	Trp family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0016900_55	742765.HMPREF9457_02112	89.4	1.21e-21	N/A	N/A
structural_annotation	UHGV-0016900_55	PF00196	N/A	N/A	N/A	N/A
PHROG	UHGV-0016900_56	phrog_25456	65.5	7.4e-20	N/A	unknown function
PHROG	UHGV-0016900_59	phrog_9822	151.8	1.4013e-45	N/A	unknown function
PHROG	UHGV-0016900_60	phrog_2600	116.9	1.9e-34	N/A	unknown function
UniRef90	UHGV-0016900_60	UniRef90_A0A401UUL1	152.0	8.94028e-42	N/A	N/A
eggNOG-mapper	UHGV-0016900_60	1298920.KI911353_gene2720	174.0	0	N/A	N/A
PHROG	UHGV-0016900_65	phrog_31560	325.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0016900_65	585501.HMPREF6123_0413	62.4	0.00000000104	N/A	N/A
structural_annotation	UHGV-0016900_66	PF17354	N/A	N/A	N/A	N/A
UniRef90	UHGV-0016900_67	UniRef90_UPI00129E4C6A	56.2	0.000000164	N/A	N/A
PHROG	UHGV-0016900_69	phrog_7488	47.5	0.00000000000014	N/A	unknown function
KOfam	UHGV-0016900_71	K17680	117.2	5.49996e-41	PEO1; twinkle protein [EC:5.6.2.3]	N/A
PHROG	UHGV-0016900_71	phrog_19	196.8	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016900_71	UniRef90_UPI0018977FCD	1193.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0016900_71	1232453.BAIF02000057_gene1145	972.0	0	DNA replication initiation	N/A
Pfam	UHGV-0016900_71	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0016900_71	COG1241	N/A	N/A	DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family	N/A
structural_annotation	UHGV-0016900_71	PF03796,PF16793,MF_01498,MF_00700,NF004109,NF040562,COG0305,COG1467	N/A	N/A	N/A	N/A
KOfam	UHGV-0016900_72	K00986	138.4	6.29996e-41	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0016900_72	phrog_1423	270.5	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016900_72	UniRef90_UPI001899D21F	674.0	0	RNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-0016900_72	658655.HMPREF0988_00871	452.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0016900_72	icity0040	95.9	5.3e-28	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0016900_72	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0016900_72	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0016900_72	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0016900_73	phrog_3206	77.4	1.3e-22	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0016900_73	UniRef90_UPI00189799E8	241.0	0	four helix bundle protein	N/A
eggNOG-mapper	UHGV-0016900_73	658655.HMPREF0988_00872	192.0	0	N/A	N/A
Pfam	UHGV-0016900_73	PF05635	N/A	N/A	23S rRNA-intervening sequence protein	23S_rRNA_IVP
structural_annotation	UHGV-0016900_73	PF05635,NF033474,COG3308	N/A	N/A	N/A	N/A
PHROG	UHGV-0016900_74	phrog_9958	170.4	0	N/A	unknown function
UniRef90	UHGV-0016900_74	UniRef90_A0A1C5S103	219.0	0	N/A	N/A
eggNOG-mapper	UHGV-0016900_74	658655.HMPREF0988_00873	212.0	0	N/A	N/A
Pfam	UHGV-0016900_74	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0016900_74	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0016900_75	phrog_9958	53.4	0.0000000000000035	N/A	unknown function
eggNOG-mapper	UHGV-0016900_75	658655.HMPREF0988_00874	78.2	7.56e-17	N/A	N/A

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0016900	Yes	49,500	40	85	1