Viral OTU vOTU-103851

vOTU: vOTU-103851

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-103851
Number of Genomes	1
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00011 → vSUBFAM-00867 → vOTU-103851
Host Lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Ligilactobacillus → Ligilactobacillus salivarius
Viral Lifestyle	temperate

Representative Genome
Genome ID	UHGV-0162553
Biosample ID	SAMN06233224
Length	26,705 bps
CheckV Completeness	71.18% (Medium-quality)
CDS Count	45
CDS Density	89.72%
tRNA Count	0
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 71.18)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0162553_1	K14059	249.9	0	int; integrase	N/A
PHROG	UHGV-0162553_1	phrog_1	228.5	0	integrase	integration and excision
UniRef90	UHGV-0162553_1	UniRef90_A0JQA1	715.0	0	Phage integrase	N/A
eggNOG-mapper	UHGV-0162553_1	1423724.BAMM01000020_gene1793	343.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0162553_1	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0162553_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0162553_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0162553_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0162553_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0162553_2	phrog_9605	383.8	0	N/A	unknown function
UniRef90	UHGV-0162553_2	UniRef90_A0A0F7PUS8	634.0	0	N/A	N/A
eggNOG-mapper	UHGV-0162553_2	1605.Lani381_0415	542.0	0	N/A	N/A
Pfam	UHGV-0162553_2	PF12358	N/A	N/A	N/A	DUF3644
Pfam	UHGV-0162553_2	PF18740	N/A	N/A	EC042_2821-like Restriction Endonuclease-like domain	EC042_2821
structural_annotation	UHGV-0162553_2	PF18740,PF12358,COG1895	N/A	N/A	N/A	N/A
KOfam	UHGV-0162553_4	K01356	94.7	1.8e-27	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0162553_4	phrog_4	128.8	4.3e-38	transcriptional repressor	transcription regulation
UniRef90	UHGV-0162553_4	UniRef90_A0A828C062	481.0	0	Peptidase S24-like protein	N/A
eggNOG-mapper	UHGV-0162553_4	764291.STRUR_0788	172.0	0	Peptidase S24-like	N/A
Pfam	UHGV-0162553_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0162553_4	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0162553_4	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0162553_4	PF00717,PF01381,MF_00015,NF007621,NF041951,COG2932	N/A	N/A	N/A	N/A
PHROG	UHGV-0162553_7	phrog_17280	111.6	3.7e-33	N/A	unknown function
eggNOG-mapper	UHGV-0162553_7	1140001.I571_01736	89.7	6.13e-23	N/A	N/A
PHROG	UHGV-0162553_9	phrog_8	45.7	0.0000000000016	transcriptional regulator	transcription regulation
UniRef90	UHGV-0162553_9	UniRef90_A0A6F9XV26	127.0	2.58e-37	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0162553_9	1605.Lani381_0846	97.8	4.47e-26	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0162553_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0162553_9	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0162553_9	PF13443,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0162553_10	K07729	50.0	0.00000000000007	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0162553_10	phrog_1373	51.9	0.000000000000015	transcriptional regulator	transcription regulation
UniRef90	UHGV-0162553_10	UniRef90_A0A828BZE4	125.0	1.99e-36	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0162553_10	1235801.C822_00106	79.0	7.41e-19	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0162553_10	retron_type_VI_hth_cluster2_1	46.6	0.0000000000011	N/A	Retron
Pfam	UHGV-0162553_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0162553_10	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0162553_10	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0162553_11	K07741	197.3	0	antB; anti-repressor protein	N/A
PHROG	UHGV-0162553_11	phrog_63	172.0	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0162553_11	UniRef90_A0JQB6	469.0	0	Phage antirepressor protein	N/A
eggNOG-mapper	UHGV-0162553_11	64186.Q38585_9CAUD	298.0	0	DNA binding	N/A
Pfam	UHGV-0162553_11	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0162553_11	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
structural_annotation	UHGV-0162553_11	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
PHROG	UHGV-0162553_12	phrog_66	40.2	0.000000000084	excisionase and transcriptional regulator	integration and excision
UniRef90	UHGV-0162553_12	UniRef90_UPI001369D30F	175.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0162553_12	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
UniRef90	UHGV-0162553_14	UniRef90_A0A7X2SSH0	114.0	2.69e-32	Zinc ribbon domain-containing protein	N/A
PHROG	UHGV-0162553_16	phrog_2205	140.0	9.99967e-42	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0162553_16	UniRef90_UPI001368BA70	334.0	0	host-nuclease inhibitor Gam family protein	N/A
eggNOG-mapper	UHGV-0162553_16	1031288.AXAA01000044_gene1974	116.0	2.44e-30	Bacteriophage Mu Gam like protein	N/A
Pfam	UHGV-0162553_16	PF07352	N/A	N/A	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
structural_annotation	UHGV-0162553_16	PF07352	N/A	N/A	N/A	N/A
PHROG	UHGV-0162553_17	phrog_124	115.6	5.4e-34	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0162553_17	UniRef90_UPI0013715596	420.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0162553_17	349123.Lreu23DRAFT_4022	280.0	0	AAA domain	N/A
Pfam	UHGV-0162553_17	PF13479	N/A	N/A	AAA domain	AAA_24
NCBIFam	UHGV-0162553_17	TIGR01618.1	N/A	N/A	phage nucleotide-binding protein	N/A
structural_annotation	UHGV-0162553_17	PF13479,MF_00350,TIGR01618,COG1066	N/A	N/A	N/A	N/A
PHROG	UHGV-0162553_18	phrog_378	123.8	9.7e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0162553_18	UniRef90_UPI00136F7FAF	236.0	0	N/A	N/A
eggNOG-mapper	UHGV-0162553_18	1158604.I591_01790	144.0	5.57002e-41	N/A	N/A
Pfam	UHGV-0162553_18	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-0162553_18	PF05037,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0162553_19	phrog_398	243.4	0	N/A	unknown function
UniRef90	UHGV-0162553_19	UniRef90_UPI000BB0124B	336.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-0162553_19	1423724.BAMM01000020_gene1807	343.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-0162553_19	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-0162553_19	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-0162553_20	phrog_428	126.4	3.1e-37	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0162553_20	UniRef90_UPI0015BBC14D	548.0	0	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0162553_20	1220551.SCHR_00760	160.0	4.2039e-45	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-0162553_20	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
Pfam	UHGV-0162553_20	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0162553_20	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0162553_20	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
KOfam	UHGV-0162553_21	K02314	255.9	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0162553_21	phrog_19	239.6	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0162553_21	UniRef90_A0A1V9TNF7	753.0	0	SF4 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-0162553_21	1423724.BAMM01000020_gene1809	457.0	0	DnaB-like helicase C terminal domain	N/A
Pfam	UHGV-0162553_21	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0162553_21	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0162553_21	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0162553_22	1423724.BAMM01000020_gene1810	98.6	1.64e-24	N/A	N/A
PHROG	UHGV-0162553_23	phrog_997	138.5	2.79993e-41	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0162553_23	UniRef90_A0A8F5I1F8	261.0	0	Replication terminator protein	N/A
eggNOG-mapper	UHGV-0162553_23	1231336.L248_2133	111.0	1.38e-29	N/A	N/A
PHROG	UHGV-0162553_24	phrog_1029	321.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0162553_24	1158614.I592_02291	319.0	0	N/A	N/A
structural_annotation	UHGV-0162553_24	PF10065,COG5532	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0162553_29	PF06107,NF041485	N/A	N/A	N/A	N/A
PHROG	UHGV-0162553_30	phrog_248	120.6	1.1e-35	transcriptional activator	transcription regulation
UniRef90	UHGV-0162553_30	UniRef90_F7QUN1	304.0	0	Phage transcriptional regulator, ArpU family	N/A
eggNOG-mapper	UHGV-0162553_30	220668.lp_2426	65.5	0.0000000000282	Phage transcriptional regulator, ArpU family	N/A
NCBIFam	UHGV-0162553_30	TIGR01637.1	N/A	N/A	ArpU family phage packaging/lysis transcriptional regulator	N/A
structural_annotation	UHGV-0162553_30	PF07374,TIGR01637	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0162553_31	203120.LEUM_1661	81.6	1.69e-16	N/A	N/A
structural_annotation	UHGV-0162553_31	PF10799,NF008959	N/A	N/A	N/A	N/A
PHROG	UHGV-0162553_33	phrog_20177	86.1	2.8e-25	N/A	unknown function
KOfam	UHGV-0162553_34	K03427	234.2	0	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0162553_34	phrog_6380	428.4	0	DNA methyltransferase	other
UniRef90	UHGV-0162553_34	UniRef90_A0A2U2M9F5	751.0	0	N-6 DNA methylase	N/A
eggNOG-mapper	UHGV-0162553_34	1201292.DR75_1654	489.0	0	type I restriction-modification system	N/A
PADLOC	UHGV-0162553_34	MTase_I_00005	266.6	0	Type I methyltransferase	RM
Pfam	UHGV-0162553_34	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0162553_34	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0162553_34	PF02384,MF_01872,TIGR00497,COG0286	N/A	N/A	N/A	N/A
PHROG	UHGV-0162553_35	phrog_2668	56.2	4.9e-16	N/A	unknown function
UniRef90	UHGV-0162553_35	UniRef90_UPI00136B11AE	212.0	0	restriction endonuclease subunit S	N/A
eggNOG-mapper	UHGV-0162553_35	1201292.DR75_1653	160.0	0	Type I restriction modification DNA specificity domain	N/A
structural_annotation	UHGV-0162553_35	PF01420,COG0732	N/A	N/A	N/A	N/A
KOfam	UHGV-0162553_36	K07451	48.0	0.00000000000023	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0162553_36	phrog_144	122.2	2.7e-36	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0162553_36	UniRef90_A0JQE3	310.0	0	Phage endonuclease	N/A
eggNOG-mapper	UHGV-0162553_36	1423755.BAML01000004_gene389	326.0	0	HNH nucleases	N/A
Pfam	UHGV-0162553_36	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0162553_36	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0162553_36	PF05766,TIGR02646	N/A	N/A	N/A	N/A
PHROG	UHGV-0162553_37	phrog_83	112.1	4.6e-33	terminase small subunit	head and packaging
UniRef90	UHGV-0162553_37	UniRef90_A0JQE4	298.0	0	Phage Terminase Small Subunit	N/A
eggNOG-mapper	UHGV-0162553_37	1423755.BAML01000004_gene388	290.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-0162553_37	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-0162553_37	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
COG	UHGV-0162553_37	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0162553_37	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0162553_38	phrog_9	333.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0162553_38	UniRef90_A0JQE5	1254.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0162553_38	1423755.BAML01000004_gene387	1255.0	0	Phage Terminase	N/A
Pfam	UHGV-0162553_38	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0162553_38	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0162553_38	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0162553_38	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0162553_39	phrog_1142	58.5	7.9e-17	N/A	unknown function
UniRef90	UHGV-0162553_39	UniRef90_A0JQE6	125.0	2.13e-36	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-0162553_39	278197.PEPE_1004	48.1	0.00000112	N/A	N/A
Pfam	UHGV-0162553_39	PF06341	N/A	N/A	N/A	DUF1056
structural_annotation	UHGV-0162553_39	PF06341	N/A	N/A	N/A	N/A
PHROG	UHGV-0162553_40	phrog_12	180.7	0	portal protein	head and packaging
UniRef90	UHGV-0162553_40	UniRef90_A0JQE7	751.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0162553_40	1423755.BAML01000004_gene385	686.0	0	Phage portal protein	N/A
Pfam	UHGV-0162553_40	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0162553_40	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0162553_40	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0162553_40	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0162553_41	K01358	128.2	9.7e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0162553_41	phrog_94	230.1	0	head maturation protease	head and packaging
UniRef90	UHGV-0162553_41	UniRef90_A0JQE8	448.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0162553_41	1423755.BAML01000004_gene384	410.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0162553_41	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0162553_41	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0162553_41	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0162553_42	phrog_10	198.9	0	major head protein	head and packaging
UniRef90	UHGV-0162553_42	UniRef90_A0JQE9	747.0	0	Major head protein	N/A
eggNOG-mapper	UHGV-0162553_42	1423755.BAML01000004_gene383	680.0	0	Phage capsid family	N/A
Pfam	UHGV-0162553_42	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0162553_42	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0162553_42	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0162553_42	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0162553_43	phrog_40	68.4	8.1e-20	head-tail adaptor Ad1	connector
UniRef90	UHGV-0162553_43	UniRef90_A0JQF0	205.0	0	DNA packaging, phage associated	N/A
eggNOG-mapper	UHGV-0162553_43	764291.STRUR_0831	107.0	4.56e-29	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0162553_43	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0162553_43	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0162553_43	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0162553_44	phrog_25	52.6	0.0000000000000079	head closure Hc1	connector
UniRef90	UHGV-0162553_44	UniRef90_A0JQF1	243.0	0	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-0162553_44	1423755.BAML01000004_gene381	222.0	0	Phage head-tail joining protein	N/A
Pfam	UHGV-0162553_44	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0162553_44	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0162553_44	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0162553_45	phrog_5	52.3	0.000000000000016	tail completion or Neck1 protein	connector
UniRef90	UHGV-0162553_45	UniRef90_A0JQF2	244.0	0	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-0162553_45	1423755.BAML01000004_gene380	201.0	0	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0162553_45	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0162553_45	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0162553_45	PF05069,TIGR01725	N/A	N/A	N/A	N/A

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0162553	Yes	26,705	32	71	1