Viral OTU vOTU-105981

vOTU: vOTU-105981

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-105981
Number of Genomes	1
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00316 → vGENUS-09188 → vOTU-105981
Host Lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis
Viral Lifestyle	lytic

Representative Genome
Genome ID	UHGV-0180841
Biosample ID	SAMN09781780
Length	21,825 bps
CheckV Completeness	58.74% (Medium-quality)
CDS Count	32
CDS Density	89.90%
tRNA Count	0
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 58.74)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0180841_1	K19370	42.6	0.0000000000063	DNAJC22; DnaJ homolog subfamily C member 22	N/A
PHROG	UHGV-0180841_1	phrog_10292	58.3	8.5e-18	N/A	unknown function
UniRef90	UHGV-0180841_1	UniRef90_A0A2Z4QAL0	122.0	1.29e-32	TM2 domain protein	N/A
eggNOG-mapper	UHGV-0180841_1	665956.HMPREF1032_00562	107.0	5.35e-28	TM2 domain	N/A
Pfam	UHGV-0180841_1	PF13248	N/A	N/A	zinc-ribbon domain	zf-ribbon_3
Pfam	UHGV-0180841_1	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-0180841_1	COG2314	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0180841_1	PF05154,PF12773,MF_00788,NF003161	N/A	N/A	N/A	N/A
KOfam	UHGV-0180841_2	K07448	126.1	8.1e-38	mrr; restriction system protein	N/A
PHROG	UHGV-0180841_2	phrog_19856	50.8	0.000000000000015	N/A	unknown function
eggNOG-mapper	UHGV-0180841_2	397287.C807_03320	149.0	1.19e-39	Restriction endonuclease	N/A
PADLOC	UHGV-0180841_2	ZorD1_00005	72.0	8.7e-21	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0180841_2	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-0180841_2	COG1787	N/A	N/A	Endonuclease, HJR/Mrr/RecB family	N/A
PHROG	UHGV-0180841_3	phrog_87	43.5	0.0000000000042	metallo-protease	other
UniRef90	UHGV-0180841_3	UniRef90_A0A329UQ57	207.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0180841_3	1507.HMPREF0262_00423	87.4	4.46e-20	IrrE N-terminal-like domain	N/A
COG	UHGV-0180841_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0180841_3	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0180841_4	phrog_8	62.3	1.1e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0180841_4	UniRef90_A0A372V3Y4	97.8	3.83e-24	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0180841_4	411483.FAEPRAA2165_00756	97.4	1.07e-23	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0180841_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0180841_4	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0180841_4	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0180841_5	UniRef90_A0A372V3V8	87.4	2e-21	XRE family transcriptional regulator	N/A
Pfam	UHGV-0180841_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0180841_5	PF10078,NF040507,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0180841_6	phrog_2232	196.4	0	N/A	unknown function
UniRef90	UHGV-0180841_6	UniRef90_UPI00156E138F	166.0	0	N/A	N/A
eggNOG-mapper	UHGV-0180841_6	748224.HMPREF9436_01448	259.0	0	N/A	N/A
Pfam	UHGV-0180841_6	PF14337	N/A	N/A	Abortive infection alpha	Abi_alpha
structural_annotation	UHGV-0180841_6	PF14337,TIGR03899	N/A	N/A	N/A	N/A
PHROG	UHGV-0180841_10	phrog_4583	44.1	0.0000000000031	transcriptional repressor	transcription regulation
UniRef90	UHGV-0180841_10	UniRef90_UPI000A0213FB	87.0	5.89e-21	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0180841_10	1680.BADO_1596	47.0	0.00000486	BetR domain	N/A
Pfam	UHGV-0180841_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0180841_10	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0180841_11	UniRef90_A0A367GHD7	159.0	0	HTH_17 domain-containing protein	N/A
Pfam	UHGV-0180841_11	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-0180841_13	PF12957	N/A	N/A	N/A	N/A
PHROG	UHGV-0180841_15	phrog_1733	60.4	1.8e-17	N/A	unknown function
UniRef90	UHGV-0180841_15	UniRef90_UPI00196846D9	172.0	6.55808e-43	cell envelope integrity protein TolA	N/A
eggNOG-mapper	UHGV-0180841_15	665956.HMPREF1032_03597	203.0	0	DNA binding	N/A
COG	UHGV-0180841_15	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0180841_15	PF03677	N/A	N/A	N/A	N/A
KOfam	UHGV-0180841_16	K03546	50.3	0.000000000000026	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0180841_16	phrog_1499	458.8	0	N/A	unknown function
UniRef90	UHGV-0180841_16	UniRef90_A0A367GHQ5	813.0	0	Chromosome segregation protein SMC	N/A
eggNOG-mapper	UHGV-0180841_16	1235798.C817_04766	510.0	0	AAA ATPase domain	N/A
Pfam	UHGV-0180841_16	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0180841_16	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0180841_16	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-0180841_17	phrog_124	228.8	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180841_17	UniRef90_UPI00122C2B12	522.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0180841_17	1232449.BAHV02000008_gene618	362.0	0	AAA domain	N/A
Pfam	UHGV-0180841_17	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0180841_17	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0180841_18	phrog_2698	189.0	0	N/A	unknown function
UniRef90	UHGV-0180841_18	UniRef90_A0A367GFE7	344.0	0	N/A	N/A
eggNOG-mapper	UHGV-0180841_18	294382.Q5YA95_9CAUD	139.0	2.1e-39	N/A	N/A
structural_annotation	UHGV-0180841_18	PF05037	N/A	N/A	N/A	N/A
KOfam	UHGV-0180841_19	K17677	348.2	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0180841_19	phrog_16	271.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180841_19	UniRef90_A0A367GH68	1073.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0180841_19	610130.Closa_1369	761.0	0	DEAD-like helicases superfamily	N/A
PADLOC	UHGV-0180841_19	mREase_IV_00005	135.3	4.9e-40	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0180841_19	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0180841_19	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0180841_19	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0180841_19	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-0180841_20	K07505	370.0	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0180841_20	phrog_2597	1087.9	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180841_20	UniRef90_A0A367GFF7	1524.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0180841_20	999413.HMPREF1094_00232	872.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0180841_20	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0180841_20	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0180841_20	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0180841_20	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
PHROG	UHGV-0180841_21	phrog_140	87.0	2.6e-25	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0180841_21	UniRef90_A0A367GHC7	285.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0180841_21	394503.Ccel_3302	155.0	0	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0180841_21	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0180841_21	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0180841_21	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0180841_26	phrog_36	81.6	1.2e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0180841_26	UniRef90_A0A353BRJ1	102.0	3.95e-25	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0180841_26	411471.SUBVAR_05843	141.0	2.4e-41	N/A	N/A
structural_annotation	UHGV-0180841_26	PF04545,MF_00674,NF005248,COG1595	N/A	N/A	N/A	N/A
KOfam	UHGV-0180841_29	K03071	62.1	1.2e-17	secB; preprotein translocase subunit SecB	N/A
PHROG	UHGV-0180841_29	phrog_21664	46.1	0.00000000000098	N/A	unknown function
UniRef90	UHGV-0180841_29	UniRef90_A0A3E2TBE1	122.0	5.47e-33	Preprotein translocase subunit SecB	N/A
eggNOG-mapper	UHGV-0180841_29	478749.BRYFOR_09873	80.5	1.77e-17	Preprotein translocase subunit SecB	N/A
Pfam	UHGV-0180841_29	PF02556	N/A	N/A	Preprotein translocase subunit SecB	SecB
COG	UHGV-0180841_29	COG1952	N/A	N/A	Preprotein translocase subunit SecB	N/A
structural_annotation	UHGV-0180841_29	PF02556,MF_00821,NF004391,COG1952	N/A	N/A	N/A	N/A
PHROG	UHGV-0180841_30	phrog_606	86.9	2.3e-25	terminase small subunit	head and packaging
UniRef90	UHGV-0180841_30	UniRef90_UPI00195648BB	178.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0180841_30	397290.C810_05185	157.0	0	DNA-packaging protein gp3	N/A
Pfam	UHGV-0180841_30	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0180841_30	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0180841_31	K06909	136.2	3.4e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0180841_31	phrog_2	159.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0180841_31	UniRef90_A0A367GH60	870.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0180841_31	1120746.CCNL01000014_gene2093	543.0	0	DNA packaging	N/A
Pfam	UHGV-0180841_31	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0180841_31	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0180841_31	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0180841_31	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0180841_31	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0180841_32	phrog_533	330.2	0	portal protein	head and packaging
UniRef90	UHGV-0180841_32	UniRef90_A0A367GFE3	872.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0180841_32	663278.Ethha_0090	554.0	0	N/A	N/A
structural_annotation	UHGV-0180841_32	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0180841	Yes	21,825	56	59	1