Viral OTU vOTU-115166

vOTU: vOTU-115166

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-115166
Number of Genomes	1
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00010 → vSUBFAM-00106 → vOTU-115166
Host Lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter rectalis
Viral Lifestyle	temperate

Representative Genome
Genome ID	UHGV-1440341
Biosample ID	SAMN02333995
Length	28,871 bps
CheckV Completeness	69.67% (Medium-quality)
CDS Count	45
CDS Density	90.49%
tRNA Count	0
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 69.67)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1440341_2	phrog_4105	92.6	2.8e-27	N/A	unknown function
eggNOG-mapper	UHGV-1440341_2	411459.RUMOBE_00911	163.0	0	N/A	N/A
PHROG	UHGV-1440341_3	phrog_443	51.0	0.000000000000034	holin	lysis
UniRef90	UHGV-1440341_3	UniRef90_UPI001BA9F6DF	98.6	1.69e-25	holin	N/A
eggNOG-mapper	UHGV-1440341_3	1235802.C823_05612	92.8	5.62e-24	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1440341_3	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1440341_3	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-1440341_4	K01447	104.4	1.5e-30	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1440341_4	phrog_670	111.0	1.5e-32	endolysin	lysis
UniRef90	UHGV-1440341_4	UniRef90_N1ZQG2	297.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-1440341_4	1235802.C823_05611	297.0	0	Ami_2	N/A
Pfam	UHGV-1440341_4	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1440341_4	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-1440341_4	PF01510,PF08239,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
KOfam	UHGV-1440341_5	K14059	90.3	2.9e-26	int; integrase	N/A
PHROG	UHGV-1440341_5	phrog_1	118.1	1e-34	integrase	integration and excision
UniRef90	UHGV-1440341_5	UniRef90_R9J0C8	523.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1440341_5	397288.C806_00112	523.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1440341_5	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1440341_5	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1440341_5	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1440341_6	K14623	152.7	4.2039e-45	dinD; DNA-damage-inducible protein D	N/A
PHROG	UHGV-1440341_6	phrog_8036	184.2	0	N/A	unknown function
UniRef90	UHGV-1440341_6	UniRef90_R6BDI7	209.0	0	DNA-damage-inducible protein D family protein	N/A
eggNOG-mapper	UHGV-1440341_6	411461.DORFOR_00036	216.0	0	BRO family, N-terminal domain	N/A
PADLOC	UHGV-1440341_6	Specificity_I_00032	189.3	0	Type I specificity subunit	RM
COG	UHGV-1440341_6	COG3645	N/A	N/A	Phage antirepressor protein YoqD, KilAC domain	N/A
KOfam	UHGV-1440341_7	K14623	179.5	0	dinD; DNA-damage-inducible protein D	N/A
PHROG	UHGV-1440341_7	phrog_8036	170.2	0	N/A	unknown function
UniRef90	UHGV-1440341_7	UniRef90_A0A564VLU3	242.0	0	DNA-damage-inducible protein D	N/A
eggNOG-mapper	UHGV-1440341_7	665950.HMPREF1025_02565	195.0	0	N/A	N/A
PADLOC	UHGV-1440341_7	Specificity_I_00032	134.9	8.1e-40	Type I specificity subunit	RM
Pfam	UHGV-1440341_7	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-1440341_7	COG3645	N/A	N/A	Phage antirepressor protein YoqD, KilAC domain	N/A
KOfam	UHGV-1440341_8	K01356	151.0	1.26117e-44	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1440341_8	phrog_4	145.0	5.49309e-43	transcriptional repressor	transcription regulation
UniRef90	UHGV-1440341_8	UniRef90_A0A1Y4RDC3	271.0	0	Repressor LexA	N/A
eggNOG-mapper	UHGV-1440341_8	478749.BRYFOR_07570	213.0	0	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-1440341_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1440341_8	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1440341_8	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1440341_8	PF01381,PF00717,MF_00015,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1440341_9	UniRef90_A0A1Y4RCY6	107.0	3.65e-29	N/A	N/A
eggNOG-mapper	UHGV-1440341_9	1121335.Clst_0370	98.6	1.39e-26	N/A	N/A
structural_annotation	UHGV-1440341_9	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1440341_10	PF20385	N/A	N/A	N/A	N/A
PHROG	UHGV-1440341_12	phrog_3292	50.1	0.000000000000045	N/A	unknown function
UniRef90	UHGV-1440341_12	UniRef90_UPI0012F79817	100.0	1.04e-26	KTSC domain-containing protein	N/A
eggNOG-mapper	UHGV-1440341_12	1408823.AXUS01000024_gene2707	83.2	1.76e-20	KTSC domain	N/A
Pfam	UHGV-1440341_12	PF13619	N/A	N/A	KTSC domain	KTSC
COG	UHGV-1440341_12	COG4249	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1440341_12	PF13619	N/A	N/A	N/A	N/A
PHROG	UHGV-1440341_17	phrog_674	181.5	0	N/A	unknown function
UniRef90	UHGV-1440341_17	UniRef90_A0A3R6B153	228.0	0	N/A	N/A
eggNOG-mapper	UHGV-1440341_17	411460.RUMTOR_02065	196.0	0	N/A	N/A
Pfam	UHGV-1440341_17	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1440341_17	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-1440341_18	phrog_155	116.9	1.8e-34	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1440341_18	UniRef90_UPI001C031D02	351.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-1440341_18	357809.Cphy_2988	212.0	0	ERF superfamily	N/A
Pfam	UHGV-1440341_18	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-1440341_18	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1440341_18	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1440341_19	phrog_72	47.8	0.00000000000022	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1440341_19	UniRef90_A0A285PU94	149.0	2.73954e-42	Recombinase NinB	N/A
eggNOG-mapper	UHGV-1440341_19	1410650.JHWL01000003_gene2850	143.0	9.52995e-41	N/A	N/A
structural_annotation	UHGV-1440341_19	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-1440341_20	phrog_7566	92.1	3.7e-27	N/A	unknown function
UniRef90	UHGV-1440341_20	UniRef90_A0A412KF94	165.0	0	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-1440341_20	411459.RUMOBE_00948	53.9	0.0000000634	N/A	N/A
KOfam	UHGV-1440341_22	K01160	40.0	0.000000000099	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1440341_22	phrog_1682	74.9	1.2e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1440341_22	UniRef90_A0A412FH46	179.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1440341_22	1235790.C805_00029	169.0	0	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-1440341_22	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1440341_22	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1440341_23	phrog_15768	114.2	1.1e-33	N/A	unknown function
UniRef90	UHGV-1440341_23	UniRef90_A0A0J9CGG0	200.0	0	N/A	N/A
eggNOG-mapper	UHGV-1440341_23	1121344.JHZO01000003_gene982	120.0	2.18e-30	N/A	N/A
AcrCatalog	UHGV-1440341_23	cluster_14472	164.0	0	NA	N/A
Pfam	UHGV-1440341_23	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1440341_23	PF19808	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1440341_24	COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-1440341_25	phrog_2600	138.3	6.50006e-41	N/A	unknown function
eggNOG-mapper	UHGV-1440341_25	1178540.BA70_18565	176.0	0	N/A	N/A
PHROG	UHGV-1440341_27	phrog_25176	132.6	1.6e-39	N/A	unknown function
eggNOG-mapper	UHGV-1440341_27	397290.C810_01476	168.0	0	N/A	N/A
KOfam	UHGV-1440341_28	K07319	93.7	1.6e-27	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-1440341_28	phrog_16	220.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1440341_28	UniRef90_A0A173S745	1576.0	0	Putative methyltransferase	N/A
eggNOG-mapper	UHGV-1440341_28	1298920.KI911353_gene2709	1370.0	0	DEAD-like helicases superfamily	N/A
Pfam	UHGV-1440341_28	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-1440341_28	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1440341_28	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1440341_28	PF01555,PF16203,PF04851,MF_01821,MF_00472,NF041790,NF008572,COG0553,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1440341_29	phrog_30343	218.3	0	N/A	unknown function
UniRef90	UHGV-1440341_29	UniRef90_A0A7X5CEC9	258.0	0	N-acetyltransferase	N/A
eggNOG-mapper	UHGV-1440341_29	411473.RUMCAL_00285	90.9	9.32e-20	N/A	N/A
structural_annotation	UHGV-1440341_29	PF11039,MF_02210,TIGR03585,COG1670	N/A	N/A	N/A	N/A
PHROG	UHGV-1440341_30	phrog_8684	105.9	1.4e-31	N/A	unknown function
UniRef90	UHGV-1440341_30	UniRef90_A0A173RDP8	151.0	2.52234e-44	YopX protein	N/A
eggNOG-mapper	UHGV-1440341_30	742733.HMPREF9469_00912	90.5	3e-21	YopX protein	N/A
Pfam	UHGV-1440341_30	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1440341_30	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1440341_30	PF09643,TIGR01671	N/A	N/A	N/A	N/A
UniRef90	UHGV-1440341_33	UniRef90_UPI001F13E043	83.6	2.02e-19	ABC transporter ATP-binding protein	N/A
KOfam	UHGV-1440341_34	K07474	101.0	2.1e-29	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1440341_34	phrog_2606	301.3	0	terminase small subunit	head and packaging
UniRef90	UHGV-1440341_34	UniRef90_UPI0015702ED4	362.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-1440341_34	1304866.K413DRAFT_3033	206.0	0	terminase, small subunit	N/A
Pfam	UHGV-1440341_34	PF10668	N/A	N/A	Phage terminase small subunit	Phage_terminase
Pfam	UHGV-1440341_34	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1440341_34	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1440341_34	PF03592,PF10668,NF040601,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-1440341_35	K06909	108.7	6.2e-32	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1440341_35	phrog_2	159.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-1440341_35	UniRef90_A0A6L5YJQ3	739.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1440341_35	903814.ELI_3215	556.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-1440341_35	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-1440341_35	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1440341_35	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1440341_35	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1440341_36	phrog_533	307.5	0	portal protein	head and packaging
UniRef90	UHGV-1440341_36	UniRef90_A0A1C6CDM8	461.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-1440341_36	33035.JPJF01000106_gene3135	447.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-1440341_36	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1440341_37	phrog_556	88.8	3.9e-26	minor head protein	head and packaging
UniRef90	UHGV-1440341_37	UniRef90_UPI000E4A8F9F	144.0	4.87932e-42	minor capsid protein	N/A
eggNOG-mapper	UHGV-1440341_37	476272.RUMHYD_01780	72.0	0.0000000000000407	N/A	N/A
Pfam	UHGV-1440341_37	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1440341_37	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1440341_38	phrog_581	227.6	0	minor head protein	head and packaging
UniRef90	UHGV-1440341_38	UniRef90_A0A6L5YIK0	782.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1440341_38	642492.Clole_0816	192.0	0	N/A	N/A
Pfam	UHGV-1440341_38	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1440341_38	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1440341_38	PF06152	N/A	N/A	N/A	N/A
UniRef90	UHGV-1440341_39	UniRef90_R6BU26	53.9	0.00000018	Peptidyl-dipeptidase Dcp	N/A
PHROG	UHGV-1440341_40	phrog_194	65.4	1.1e-18	head scaffolding protein	head and packaging
UniRef90	UHGV-1440341_40	UniRef90_UPI000E538A87	166.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1440341_40	476272.RUMHYD_01775	134.0	1.95e-36	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1440341_40	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-1440341_41	phrog_544	158.0	0	major head protein	head and packaging
UniRef90	UHGV-1440341_41	UniRef90_A0A810PZM2	380.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1440341_41	1347392.CCEZ01000005_gene1236	253.0	0	N/A	N/A
structural_annotation	UHGV-1440341_41	PF06673,PF13629,MF_04119,TIGR04387,NF005261,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1440341_42	phrog_541	104.1	9e-31	head-tail adaptor	connector
eggNOG-mapper	UHGV-1440341_42	476272.RUMHYD_01778	76.6	8.75e-16	N/A	N/A
PHROG	UHGV-1440341_43	phrog_3366	118.8	3.4e-35	N/A	unknown function
eggNOG-mapper	UHGV-1440341_43	476272.RUMHYD_01779	84.7	8.45e-19	N/A	N/A
structural_annotation	UHGV-1440341_43	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1440341_44	phrog_3266	46.0	0.00000000000067	tail completion	connector
eggNOG-mapper	UHGV-1440341_44	397290.C810_05232	57.4	0.0000000271	N/A	N/A
structural_annotation	UHGV-1440341_44	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1440341_45	phrog_3099	60.6	3.2e-17	N/A	unknown function

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1440341	Yes	28,871	43	70	1