Viral OTU vOTU-123558

vOTU: vOTU-123558

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-123558
Number of Genomes	1
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00027 → vSUBFAM-04731 → vGENUS-08755 → vOTU-123558
Host Lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus
Viral Lifestyle	lytic

Representative Genome
Genome ID	UHGV-0038763
Biosample ID	SAMEA4969130
Length	31,963 bps
CheckV Completeness	63.41% (Medium-quality)
CDS Count	55
CDS Density	93.47%
tRNA Count	2
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 63.41)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0038763_2	phrog_2831	40.9	0.0000000000044	N/A	unknown function
UniRef90	UHGV-0038763_2	UniRef90_UPI00135AF4EE	74.3	0.00000000000000274	MazG-like family protein	N/A
eggNOG-mapper	UHGV-0038763_2	1089548.KI783301_gene2628	75.5	1.38e-16	N/A	N/A
KOfam	UHGV-0038763_4	K03553	193.0	0	recA; recombination protein RecA	N/A
PHROG	UHGV-0038763_4	phrog_97	172.9	0	UvsX-like recombinase	other
UniRef90	UHGV-0038763_4	UniRef90_A0A843GSV7	352.0	0	RECA_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0038763_4	469616.FMAG_02276	153.0	5.51999e-41	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	N/A
Pfam	UHGV-0038763_4	PF00154	N/A	N/A	recA bacterial DNA recombination protein	RecA
COG	UHGV-0038763_4	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-0038763_4	PF00154,MF_00268,TIGR02012,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0038763_5	K01493	104.4	1.6e-30	comEB; dCMP deaminase [EC:3.5.4.12]	N/A
PHROG	UHGV-0038763_5	phrog_174	119.2	1.6e-35	dCMP deaminase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0038763_5	UniRef90_A0A843FWA9	197.0	0	dCMP deaminase family protein	N/A
eggNOG-mapper	UHGV-0038763_5	634498.mru_1286	196.0	0	deaminase	N/A
PADLOC	UHGV-0038763_5	dCTPase	53.9	4.1e-24	N/A	N/A
Pfam	UHGV-0038763_5	PF00383	N/A	N/A	Cytidine and deoxycytidylate deaminase zinc-binding region	dCMP_cyt_deam_1
COG	UHGV-0038763_5	COG2131	N/A	N/A	Deoxycytidylate deaminase	N/A
PHROG	UHGV-0038763_6	phrog_1990	57.7	1.9e-16	Cas4-domain exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0038763_6	UniRef90_A0A2M7BYX0	64.7	0.0000000102	PDDEXK_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0038763_6	1499968.TCA2_4616	63.5	0.00000000769	DNA catabolic process, exonucleolytic	N/A
COG	UHGV-0038763_6	COG1468	N/A	N/A	CRISPR/Cas system-associated exonuclease Cas4, RecB family	N/A
structural_annotation	UHGV-0038763_6	PF01930,MF_03030,TIGR00372,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-0038763_10	K00600	575.4	0	glyA, SHMT; glycine hydroxymethyltransferase [EC:2.1.2.1]	N/A
PHROG	UHGV-0038763_10	phrog_9968	465.9	0	methyltransferase	other
UniRef90	UHGV-0038763_10	UniRef90_A0A1Q6QIL6	499.0	0	Serine hydroxymethyltransferase	N/A
eggNOG-mapper	UHGV-0038763_10	888727.HMPREF9092_1518	451.0	0	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism	N/A
Pfam	UHGV-0038763_10	PF00464	N/A	N/A	Serine hydroxymethyltransferase	SHMT
NCBIFam	UHGV-0038763_10	NF000586.1	N/A	N/A	serine hydroxymethyltransferase	N/A
COG	UHGV-0038763_10	COG0112	N/A	N/A	Glycine/serine hydroxymethyltransferase	N/A
HAMAP	UHGV-0038763_10	MF_00051	N/A	N/A	Serine hydroxymethyltransferase [glyA]	N/A
structural_annotation	UHGV-0038763_10	PF00464,MF_00051,NF000586,COG0112	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038763_11	COG3212	N/A	N/A	N/A	N/A
PHROG	UHGV-0038763_12	phrog_1315	40.4	0.000000000041	N/A	unknown function
PHROG	UHGV-0038763_13	phrog_6466	57.8	2e-16	DNA ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0038763_13	UniRef90_A0A843GQD5	82.4	3.55e-18	DNA_ligase_aden domain-containing protein	N/A
eggNOG-mapper	UHGV-0038763_13	720555.BATR1942_09670	53.9	0.0000000589	NAD-dependent DNA ligase adenylation domain	N/A
COG	UHGV-0038763_13	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-0038763_16	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038763_17	PF21138,NF009630,COG2375	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038763_21	PF10922	N/A	N/A	N/A	N/A
KOfam	UHGV-0038763_24	K03469	170.0	0	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0038763_24	phrog_531	154.3	0	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0038763_24	UniRef90_D5X7L7	153.0	4.2039e-45	Ribonuclease H	N/A
eggNOG-mapper	UHGV-0038763_24	635013.TherJR_1738	153.0	1.4013e-45	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0038763_24	PF00075	N/A	N/A	RNase H	RNase_H
NCBIFam	UHGV-0038763_24	NF001236.0	N/A	N/A	ribonuclease HI	N/A
COG	UHGV-0038763_24	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0038763_24	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038763_25	PF14084	N/A	N/A	N/A	N/A
KOfam	UHGV-0038763_29	K03465	200.0	0	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-0038763_29	phrog_85	135.5	2.2e-40	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0038763_29	UniRef90_A0A6I2QY16	284.0	0	FAD-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-0038763_29	1216932.CM240_2226	251.0	0	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	N/A
Pfam	UHGV-0038763_29	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
NCBIFam	UHGV-0038763_29	TIGR02170.1	N/A	N/A	FAD-dependent thymidylate synthase	N/A
COG	UHGV-0038763_29	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
structural_annotation	UHGV-0038763_29	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
UniRef90	UHGV-0038763_31	UniRef90_UPI001F4A8911	81.6	5.33e-17	pyrimidine dimer DNA glycosylase/endonuclease V	N/A
eggNOG-mapper	UHGV-0038763_31	1033740.CAEW01000025_gene831	70.9	0.000000000000122	Pyrimidine dimer DNA glycosylase	N/A
Pfam	UHGV-0038763_31	PF03013	N/A	N/A	Pyrimidine dimer DNA glycosylase	Pyr_excise
structural_annotation	UHGV-0038763_31	TIGR02328	N/A	N/A	N/A	N/A
PHROG	UHGV-0038763_32	phrog_309	110.0	1.5e-32	terminase small subunit	head and packaging
UniRef90	UHGV-0038763_32	UniRef90_A0A843GSL4	137.0	1.26e-37	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0038763_32	1408437.JNJN01000045_gene597	104.0	6.8e-26	HNH endonuclease	N/A
COG	UHGV-0038763_32	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0038763_32	PF07141	N/A	N/A	N/A	N/A
PHROG	UHGV-0038763_33	phrog_1238	58.1	1.5e-16	phosphoheptose isomerase	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0038763_33	1123288.SOV_1c01360	143.0	8.35174e-43	UMP catabolic process	N/A
COG	UHGV-0038763_33	COG0647	N/A	N/A	Ribonucleotide monophosphatase NagD, HAD superfamily	N/A
structural_annotation	UHGV-0038763_33	PF08645,TIGR01689,COG0241	N/A	N/A	N/A	N/A
PHROG	UHGV-0038763_35	phrog_419	95.4	7.9e-28	N/A	unknown function
eggNOG-mapper	UHGV-0038763_35	1282664.H354_06646	93.2	8.2e-24	N/A	N/A
structural_annotation	UHGV-0038763_35	PF14083	N/A	N/A	N/A	N/A
KOfam	UHGV-0038763_36	K06909	303.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0038763_36	phrog_2	121.4	1.2e-35	terminase large subunit	head and packaging
UniRef90	UHGV-0038763_36	UniRef90_A0A349YI29	584.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0038763_36	536232.CLM_2529	475.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0038763_36	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0038763_36	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0038763_36	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0038763_36	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0038763_36	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0038763_37	290402.Cbei_1718	51.2	0.00000222	N/A	N/A
COG	UHGV-0038763_37	COG3600	N/A	N/A	N/A	N/A
PHROG	UHGV-0038763_38	phrog_64	114.5	7.3e-34	portal protein	head and packaging
UniRef90	UHGV-0038763_38	UniRef90_A0A843JBG3	419.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0038763_38	1121342.AUCO01000012_gene1700	132.0	1.02e-30	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0038763_38	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0038763_38	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0038763_39	phrog_1657	192.4	0	head morphogenesis	head and packaging
UniRef90	UHGV-0038763_39	UniRef90_UPI001D0FF452	210.0	0	ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-0038763_39	1582149.A0A0A8WEF5_9CAUD	210.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-0038763_39	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
PHROG	UHGV-0038763_41	phrog_2303	70.4	3e-20	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0038763_41	1460640.JCM19046_3518	67.8	0.0000000000589	N/A	N/A
structural_annotation	UHGV-0038763_41	PF10788,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0038763_42	phrog_909	60.2	3.2e-17	major head protein	head and packaging
UniRef90	UHGV-0038763_42	UniRef90_A0A098MDH2	56.6	0.000000122	N/A	N/A
eggNOG-mapper	UHGV-0038763_42	268407.PWYN_15680	56.6	0.0000000204	N/A	N/A
structural_annotation	UHGV-0038763_42	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-0038763_43	phrog_29	254.9	0	major head protein	head and packaging
UniRef90	UHGV-0038763_43	UniRef90_UPI00082C04A5	461.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0038763_43	1158612.I580_01912	331.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0038763_43	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0038763_43	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0038763_44	PF08593	N/A	N/A	N/A	N/A
PHROG	UHGV-0038763_45	phrog_4020	58.0	1.5e-16	N/A	unknown function
eggNOG-mapper	UHGV-0038763_45	748727.CLJU_c31290	64.3	0.00000000000199	N/A	N/A
structural_annotation	UHGV-0038763_46	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0038763_47	UniRef90_UPI00164BA869	80.9	2.04e-17	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0038763_47	1567015.A0A0A7RUL9_9VIRU	82.8	6e-19	N/A	N/A
structural_annotation	UHGV-0038763_47	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0038763_48	phrog_7585	71.5	1.5e-20	N/A	unknown function
eggNOG-mapper	UHGV-0038763_48	1121342.AUCO01000012_gene1689	66.2	0.00000000000435	N/A	N/A
structural_annotation	UHGV-0038763_48	PF05657,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0038763_49	phrog_6686	99.8	1.6e-29	tail tube protein	tail
UniRef90	UHGV-0038763_49	UniRef90_A0A1C6KI12	147.0	2.29e-40	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0038763_49	871584.D9ZNE2_9CAUD	72.4	0.00000000000049	N/A	N/A
structural_annotation	UHGV-0038763_49	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0038763_50	phrog_6280	110.2	1.4e-32	N/A	unknown function
UniRef90	UHGV-0038763_50	UniRef90_A0A8J6PH67	107.0	3.76e-27	Esterase	N/A
eggNOG-mapper	UHGV-0038763_50	1443125.Z962_12410	85.9	2.24e-19	N/A	N/A
PHROG	UHGV-0038763_51	phrog_6541	58.2	1e-16	N/A	unknown function
eggNOG-mapper	UHGV-0038763_51	332101.JIBU02000023_gene4727	47.4	0.00000219	N/A	N/A
PHROG	UHGV-0038763_52	phrog_13339	394.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0038763_52	UniRef90_Q5XBT1	351.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0038763_52	764299.STRIC_0111	353.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0038763_52	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0038763_52	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0038763_52	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0038763_52	PF10145,MF_04138,TIGR01760	N/A	N/A	N/A	N/A
PHROG	UHGV-0038763_53	phrog_1194	44.8	0.000000000002	N/A	unknown function
structural_annotation	UHGV-0038763_53	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0038763_54	phrog_32744	214.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0038763_54	1226322.HMPREF1545_00061	67.0	0.0000000113	N/A	N/A
structural_annotation	UHGV-0038763_54	PF14594,PF21722,NF033848,COG4379	N/A	N/A	N/A	N/A

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0038763	Yes	31,963	35	63	1