Viral OTU vOTU-125076

vOTU: vOTU-125076

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster Properties
vOTU ID	vOTU-125076
Number of Genomes	1
Taxonomy (ICTV)	root → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00680 → vOTU-125076
Host Lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → UMGS363
Viral Lifestyle	lytic

Representative Genome
Genome ID	UHGV-0039530
Biosample ID	SAMEA4969124
Length	22,093 bps
CheckV Completeness	61.16% (Medium-quality)
CDS Count	38
CDS Density	95.57%
tRNA Count	0
Viral Confidence	Confident

Representative Genome Content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 61.16)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0039530_1	phrog_8	63.0	7.2e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0039530_1	UniRef90_A0A2N0ULR3	114.0	9.06e-29	HTH-type transcriptional regulator ImmR	N/A
eggNOG-mapper	UHGV-0039530_1	411459.RUMOBE_00961	85.9	1.96e-19	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-0039530_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0039530_1	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
KOfam	UHGV-0039530_2	K22300	47.2	0.00000000000041	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0039530_2	phrog_8	57.9	2.5e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0039530_2	UniRef90_A0A2N0KB25	93.2	8.81e-24	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0039530_2	1304866.K413DRAFT_0834	85.1	8.33e-21	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-0039530_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0039530_2	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0039530_2	PF01381,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0039530_9	phrog_1733	90.9	8.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-0039530_9	857293.CAAU_0767	101.0	2.51e-21	N/A	N/A
Pfam	UHGV-0039530_9	PF03118	N/A	N/A	Bacterial RNA polymerase, alpha chain C terminal domain	RNA_pol_A_CTD
structural_annotation	UHGV-0039530_9	PF03677	N/A	N/A	N/A	N/A
PHROG	UHGV-0039530_10	phrog_253	115.2	1.1e-34	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039530_10	UniRef90_UPI0019171ADA	149.0	6.51043e-42	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0039530_10	1236573.K4LRS9_9CAUD	69.7	0.00000000000216	Siphovirus Gp157	N/A
Pfam	UHGV-0039530_10	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0039530_10	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0039530_11	phrog_1366	236.3	0	N/A	unknown function
UniRef90	UHGV-0039530_11	UniRef90_UPI00048A73B0	397.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0039530_11	1410670.JHXF01000015_gene2269	390.0	0	AAA domain	N/A
Pfam	UHGV-0039530_11	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-0039530_11	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-0039530_11	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0039530_12	K19789	320.6	0	radD; DNA repair protein RadD	N/A
PHROG	UHGV-0039530_12	phrog_16	275.0	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039530_12	UniRef90_A0A356CZA9	612.0	0	Helicase	N/A
eggNOG-mapper	UHGV-0039530_12	1410670.JHXF01000015_gene2270	598.0	0	helicase	N/A
PADLOC	UHGV-0039530_12	mREase_IV_00005	113.4	3.8e-34	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0039530_12	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0039530_12	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0039530_12	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0039530_12	PF04851,PF00271,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0039530_13	phrog_5702	89.3	1.8e-26	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039530_13	UniRef90_A0A2C1C8J6	140.0	3.72998e-41	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0039530_13	1347392.CCEZ01000005_gene1219	127.0	1e-36	VRR_NUC	N/A
Pfam	UHGV-0039530_13	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0039530_13	PF01870,MF_00130,NF002581,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0039530_14	phrog_378	122.1	4.2e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039530_14	UniRef90_UPI0006852132	156.0	4.2039e-45	N/A	N/A
eggNOG-mapper	UHGV-0039530_14	1410670.JHXF01000015_gene2272	156.0	1.4013e-45	N/A	N/A
Pfam	UHGV-0039530_14	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-0039530_14	PF05037,NF004948	N/A	N/A	N/A	N/A
KOfam	UHGV-0039530_15	K06919	99.3	3.7e-29	K06919; putative DNA primase/helicase	N/A
PHROG	UHGV-0039530_15	phrog_1829	799.3	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039530_15	UniRef90_A0A6N4ALN1	879.0	0	SF3 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-0039530_15	1347392.CCEZ01000005_gene1217	750.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-0039530_15	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-0039530_15	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-0039530_15	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-0039530_15	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-0039530_15	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-0039530_15	PF08706,PF05272,PF02257,MF_04000,NF011296,COG3378,COG4983	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039530_17	PF09953	N/A	N/A	N/A	N/A
PHROG	UHGV-0039530_18	phrog_8684	51.2	0.000000000000014	N/A	unknown function
UniRef90	UHGV-0039530_18	UniRef90_A0A1C5PC30	110.0	3.87e-29	YopX protein	N/A
eggNOG-mapper	UHGV-0039530_18	742767.HMPREF9456_03352	60.8	0.000000000154	YopX protein	N/A
Pfam	UHGV-0039530_18	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-0039530_19	PF13248	N/A	N/A	N/A	N/A
PHROG	UHGV-0039530_20	phrog_36	53.7	0.0000000000000045	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0039530_20	1321786.HMPREF1992_00788	55.5	0.0000000979	sigma factor activity	N/A
COG	UHGV-0039530_20	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0039530_20	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0039530_21	phrog_606	76.4	4.3e-22	terminase small subunit	head and packaging
UniRef90	UHGV-0039530_21	UniRef90_UPI0004BAB6EB	167.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0039530_21	445972.ANACOL_01838	140.0	8.88003e-41	DNA-packaging protein gp3	N/A
Pfam	UHGV-0039530_21	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0039530_21	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0039530_22	K06909	407.0	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0039530_22	phrog_3717	158.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0039530_22	UniRef90_A0A1Y3SII8	536.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0039530_22	411461.DORFOR_01162	470.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0039530_22	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0039530_22	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0039530_22	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0039530_22	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0039530_22	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0039530_23	phrog_533	351.4	0	portal protein	head and packaging
UniRef90	UHGV-0039530_23	UniRef90_A0A1C6GG74	449.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0039530_23	545697.HMPREF0216_02845	368.0	0	N/A	N/A
Pfam	UHGV-0039530_23	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0039530_23	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0039530_24	phrog_581	335.3	0	minor head protein	head and packaging
UniRef90	UHGV-0039530_24	UniRef90_A0A1C6GGW2	474.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0039530_24	903814.ELI_3213	342.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0039530_24	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0039530_24	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039530_24	PF06152,PF21814	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039530_25	NF041921	N/A	N/A	N/A	N/A
PHROG	UHGV-0039530_26	phrog_419	97.6	1.5e-28	N/A	unknown function
UniRef90	UHGV-0039530_26	UniRef90_A0A4U9RIR3	138.0	1.17e-40	N/A	N/A
eggNOG-mapper	UHGV-0039530_26	476272.RUMHYD_03324	120.0	2.46e-34	N/A	N/A
structural_annotation	UHGV-0039530_26	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-0039530_27	phrog_194	127.5	9.9e-38	head scaffolding protein	head and packaging
UniRef90	UHGV-0039530_27	UniRef90_A0A1C6GGD5	166.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0039530_27	693746.OBV_18080	134.0	3.73e-37	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0039530_27	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0039530_27	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0039530_28	phrog_422	248.0	0	major head protein	head and packaging
UniRef90	UHGV-0039530_28	UniRef90_A0A345MKD0	385.0	0	Main capsid protein	N/A
eggNOG-mapper	UHGV-0039530_28	1160721.RBI_II00538	367.0	0	N/A	N/A
structural_annotation	UHGV-0039530_28	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0039530_30	phrog_541	101.3	6.5e-30	head-tail adaptor	connector
eggNOG-mapper	UHGV-0039530_30	665956.HMPREF1032_03064	70.9	0.0000000000000632	N/A	N/A
PHROG	UHGV-0039530_31	phrog_3366	84.8	1e-24	N/A	unknown function
eggNOG-mapper	UHGV-0039530_31	642492.Clole_0823	56.2	0.0000000258	N/A	N/A
Pfam	UHGV-0039530_31	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0039530_31	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0039530_32	phrog_556	107.3	8.9e-32	minor head protein	head and packaging
UniRef90	UHGV-0039530_32	UniRef90_UPI000F51D749	149.0	2.8026e-44	minor capsid protein	N/A
eggNOG-mapper	UHGV-0039530_32	883114.HMPREF9709_01190	136.0	5.64999e-40	Minor capsid protein	N/A
Pfam	UHGV-0039530_32	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0039530_32	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0039530_33	phrog_3266	101.0	8.4e-30	tail completion	connector
eggNOG-mapper	UHGV-0039530_33	1321782.HMPREF1986_02272	58.5	0.00000000618	N/A	N/A
structural_annotation	UHGV-0039530_33	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0039530_34	phrog_3099	158.8	0	N/A	unknown function
UniRef90	UHGV-0039530_34	UniRef90_A0A3P6KYP0	88.6	3.77e-18	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-0039530_34	1151292.QEW_4530	87.4	1.46e-18	N/A	N/A
structural_annotation	UHGV-0039530_34	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0039530_36	phrog_706	166.0	0	N/A	unknown function
UniRef90	UHGV-0039530_36	UniRef90_UPI001D0FC547	143.0	1.49e-39	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0039530_36	1151292.QEW_4528	142.0	3.52001e-40	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0039530_36	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0039530_36	PF06854	N/A	N/A	N/A	N/A
Pfam	UHGV-0039530_38	PF08531	N/A	N/A	Alpha-L-rhamnosidase N-terminal domain	Bac_rhamnosid_N
COG	UHGV-0039530_38	COG3408	N/A	N/A	Glycogen debranching enzyme (alpha-1,6-glucosidase)	N/A

All Viral Genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0039530	Yes	22,093	47	61	1